Commit graph

26272 commits

Author SHA1 Message Date
Hartmut Kaiser
61d3d60414
Update HPX recipe for HPX V1.8.0 (#30896) 2022-06-01 11:06:03 -06:00
rashawnLK
174258c09a
Updated intel-gtpin package.py for most recent version, GTPin 3.0. (#30877)
* Updated intel-gtpin package.py for  most recent version, GTPin 3.0.

* Fixed style issues in package.py -- removed trailing whitespace on two
lines.
2022-06-01 11:05:41 -06:00
Erik
73c6a8f73d
Version updates for SUNDIALS and CUDA (#30874) 2022-06-01 11:01:32 -06:00
Olivier Cessenat
86dc904080
ngspice: adding version 37 (#30925) 2022-06-01 10:50:02 -06:00
Weiqun Zhang
9e1c87409d
amrex: add v22.06 (#30951) 2022-06-01 10:49:46 -06:00
Sergey Kosukhin
2b30dc2e30
nag: add new version (#30927)
* nag: add new version

* nag: update maintainers
2022-06-01 10:49:32 -06:00
Ben Darwin
b1ce756d69
minc-toolkit: add version 1.9.18.2 (#30926) 2022-06-01 10:45:34 -06:00
Ida Mjelde
1194ac6985
Adding a libunwind variant to libzmq (#30932)
* Adding a libunwind variant to libzmq

* Remove whitespace line 46
2022-06-01 10:29:56 -06:00
Asher Mancinelli
954f961208
tmux: support building from master and utf8 opts (#30928)
* tmux: support building from master and utf8 opts

* Fix style errors
2022-06-01 10:29:35 -06:00
Zack Galbreath
47ac710796
CPU & memory requests for jobs that generate GitLab CI pipelines (#30940)
gitlab ci: make sure pipeline generation isn't resource starved
2022-06-01 09:43:23 -06:00
Derek Ryan Strong
d7fb5a6db4
rclone: add 1.58 (#30887)
* Add rclone 1.58

* Update rclone git repo path
2022-05-31 19:35:12 -07:00
Maciej Wójcik
e0624b9278
gromacs: Add recent releases (#30892)
* gromacs: Add recent releases

* gromacs: Update branch name

* gromacs: Update links
2022-05-31 19:27:23 -07:00
Olivier Cessenat
e86614f7b8
gmsh: adding version 4.10.3 (#30923) 2022-05-31 18:53:03 -07:00
Garth N. Wells
d166b948ce
fenics-dolfinx: dependency updates (#30919)
* Add pugixml dependency

* Dependency updates

* Fix Spack Numpy verion

* Test more generous NumPy constraint

* Fix NumPy requirment
2022-05-31 18:49:49 -07:00
lorddavidiii
9cc3a2942d
cfitsio: add 4.1.0 (#30920) 2022-05-31 18:46:07 -07:00
Marie Houillon
5d685f9ff6
New version for openCARP packages (#30931)
Co-authored-by: openCARP consortium <info@opencarp.org>
2022-05-31 18:21:55 -07:00
Paul Kuberry
9ddf45964d
xyce: add sha for version 7.5.0 (#30941) 2022-05-31 17:59:13 -07:00
iarspider
b88cc77f16
xpmem package: add patches for building on FC 35 with kernel 5.16.18-200 (#29945) 2022-05-31 15:55:51 -07:00
Robert Cohn
f3af38ba9b
Fix module support for oneapi compilers (#28901)
Updates to improve Spack-generated modules for Intel oneAPI compilers:

* intel-oneapi-compilers set CC etc.
* Add a new package intel-oneapi-compilers-classic which can be used to
  generate a module which sets CC etc. to older compilers (e.g. icc)
* lmod module logic now updated to treat the intel-oneapi-compilers*
  packages as compilers
2022-05-31 15:02:25 -07:00
Wouter Deconinck
adc9f887ea
acts-dd4hep: new package; acts: new version (#30850)
* acts-dd4hep: new package, separated from new acts@19.1.0

* acts-dd4hep: improved versioning

* acts-dd4hep: don't use curl | sha256sum

* acts: new variant `odd` for Open Data Detector

* acts-dd4hep: style changes
2022-05-31 11:30:36 -07:00
Wouter Deconinck
9461f482d9
assimp: new version 5.2.4 (#30929) 2022-05-31 12:25:24 -06:00
Paul Kuberry
e014b889c6
xyce: remove python packages as +pymi dependencies and hdf5 from trilinos dependency (#30938) 2022-05-31 14:04:57 -04:00
snehring
181ac574bb
sentieon-genomics: adding version 202112.04 (#30876) 2022-05-31 10:05:27 -06:00
Adam J. Stewart
055c9d125d
CUDA: make cuda_arch sticky (#30910) 2022-05-30 12:53:15 -07:00
Evan Bollig
a94438b1f5
Added AWS-AHUG alinux2 pipeline (#24601)
Add spack stacks targeted at Spack + AWS + ARM HPC User Group hackathon.  Includes
a list of miniapps and full-apps that are ready to run on both x86_64 and aarch64.

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2022-05-30 10:26:39 -06:00
Joseph Wang
f583e471b8
pass CC variable to make (#30912)
Set CC to cc
2022-05-30 08:44:31 +02:00
Brian Van Essen
f67f3b1796
Add new versions of protobuf and py-protobuf (#30503)
* Add new versions

* Updated the hashes to match the published pypi.org hashes.  Added version constraints for Python.
2022-05-30 01:23:26 -05:00
Jean Luca Bez
77c86c759c
HDF5 VOL-ASYNC update versions (#30900) 2022-05-29 17:49:52 -04:00
Adam J. Stewart
8084259bd3
protobuf: fix spack versions (#30879) 2022-05-28 14:53:24 -06:00
Evan Bollig
98860c6a5f
Alinux isc buildcache (#30462)
Add two new stacks targeted at x86_64 and arm, representing an initial list of packages 
used by current and planned AWS Workshops, and built in conjunction with the ISC22
announcement of the spack public binary cache.

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2022-05-28 11:32:53 -06:00
Todd Gamblin
e6929b9ff9
0.18.0.dev0 -> 0.19.0.dev0 (#30907) 2022-05-28 17:23:01 +00:00
Tom Scogland
18c2f1a57a
refactor: packages import spack.package explicitly (#30404)
Explicitly import package utilities in all packages, and corresponding fallout.

This includes:

* rename `spack.package` to `spack.package_base`
* rename `spack.pkgkit` to `spack.package`
* update all packages in builtin, builtin_mock and tutorials to include `from spack.package import *`
* update spack style
  * ensure packages include the import
  * automatically add the new import and remove any/all imports of `spack` and `spack.pkgkit`
    from packages when using `--fix`
  * add support for type-checking packages with mypy when SPACK_MYPY_CHECK_PACKAGES
    is set in the environment
* fix all type checking errors in packages in spack upstream
* update spack create to include the new imports
* update spack repo to inject the new import, injection persists to allow for a deprecation period

Original message below:
 
As requested @adamjstewart, update all packages to use pkgkit.  I ended up using isort to do this,
so repro is easy:

```console
$ isort -a 'from spack.pkgkit import *' --rm 'spack' ./var/spack/repos/builtin/packages/*/package.py
$ spack style --fix
```

There were several line spacing fixups caused either by space manipulation in isort or by packages
that haven't been touched since we added requirements, but there are no functional changes in here.

* [x] add config to isort to make sure this is maintained going forward
2022-05-28 12:55:44 -04:00
Todd Gamblin
3054cd0eff
update changelog for v0.18.0 (#30905) 2022-05-28 17:33:20 +02:00
JDBetteridge
9016b79270
Additional BLAS/LAPACK library configuration for Numpy (#30817)
* Add amdblis and amdlibflame as BLAS/LAPACK options

* Add Cray-libsci as BLAS/LAPACK option

* Use Netlib config for Cray-libsci
2022-05-28 03:33:31 -06:00
Erik Schnetter
9f5c6fb398
hpx: New version 1.8.0 (#30848) 2022-05-28 09:40:20 +02:00
Greg Becker
19087c9d35
target optimization: re-norm optimization scale so that 0 is best. (#29926)
referred targets are currently the only minimization criteria for Spack for which we allow
negative values. That means Spack may be incentivized to add nodes to the DAG if they
match the preferred target.

This PR re-norms the minimization criteria so that preferred targets are weighted from 0,
and default target weights are offset by the number of preferred targets per-package to
calculate node_target_weight.

Also fixes a bug in the test for preferred targets that was making the test easier to pass
than it should be.
2022-05-27 22:49:41 -07:00
Greg Becker
4116b04368
update tutorial command for v0.18.0 and new gpg key (#30904) 2022-05-28 02:36:20 +00:00
JDBetteridge
1485931695
Ensure same BLAS/LAPACK config from Numpy used in Scipy (#30818)
* Call Numpy package's set_blas_lapack() and setup_build_environment() in Scipy package

* Remove broken link from comment

* Use .package attribute of spec to avoid import
2022-05-27 10:46:21 -07:00
Derek Ryan Strong
78cac4d840
Add R 4.2.0 (#30859) 2022-05-27 08:24:28 -05:00
Michael Kuhn
2f628c3a97
gcc: add 9.5.0 (#30893) 2022-05-27 12:18:57 +02:00
Adam J. Stewart
a3a8710cbe
Python: fix clingo bootstrapping on Apple M1 (#30834)
This PR fixes several issues I noticed while trying to get Spack working on Apple M1.

- [x] `build_environment.py` attempts to add `spec['foo'].libs` and `spec['foo'].headers` to our compiler wrappers for all dependencies using a try-except that ignores `NoLibrariesError` and `NoHeadersError` respectively. However, The `libs` and `headers` attributes of the Python package were erroneously using `RuntimeError` instead.
- [x] `spack external find python` (used during bootstrapping) currently has no way to determine whether or not an installation is `+shared`, so previously we would only search for static Python libs. However, most distributions including XCode/Conda/Intel ship shared Python libs. I updated `libs` to search for both shared and static (order based on variant) as a fallback.
- [x] The `headers` attribute was recursively searching in `prefix.include` for `pyconfig.h`, but this could lead to non-deterministic behavior if multiple versions of Python are installed and `pyconfig.h` files exist in multiple `<prefix>/include/pythonX.Y` locations. It's safer to search in `sysconfig.get_path('include')` instead.
- [x] The Python installation that comes with XCode is broken, and `sysconfig.get_paths` is hard-coded to return specific directories. This meant that our logic for `platlib`/`purelib`/`include` where we replace `platbase`/`base`/`installed_base` with `prefix` wasn't working and the `mkdirp` in `setup_dependent_package` was trying to create a directory in root, giving permissions issues. Even if you commented out those `mkdirp` calls, Spack would add the wrong directories to `PYTHONPATH`. Added a fallback hard-coded to `lib/pythonX.Y/site-packages` if sysconfig is broken (this is what distutils always did).
2022-05-27 03:18:20 -07:00
Paul R. C. Kent
0bf3a9c2af
llvm: 14.0.3 and 14.0.4 (#30888) 2022-05-27 09:51:54 +02:00
Severin Strobl
cff955f7bd
otf2/scorep: add versions 3.0/7.1 (#28631) 2022-05-27 00:43:58 +02:00
Scott Wittenburg
3d43ebec72
Revert "strip -Werror: all specific or none (#30284)" (#30878)
This reverts commit 330832c22c.
2022-05-26 14:17:01 -07:00
Robert Pavel
6fd07479e3
Updated mfem constraints in laghos spackage (#30851)
Updated mfme constraints in laghos spackage to better match comments and
support legacy builds of `laghos@1.0:2.0`
2022-05-26 10:20:42 -07:00
Simon Pintarelli
03bc36f8b0
q-e-sirius: remove ~apps constraint (#30857) 2022-05-26 10:18:37 -07:00
Brian Van Essen
93e1b283b7
Added hash for new versions (#30860) 2022-05-26 10:15:59 -07:00
Derek Ryan Strong
df2c0fbfbd
Add new versions of GNU parallel (#30862) 2022-05-26 10:09:43 -07:00
Derek Ryan Strong
54a69587c3
Add newer nano versions (#30865) 2022-05-26 10:04:50 -07:00
Hans Johansen
294312f02b
Adding new package bricks for x86, cuda (#30863)
* Adding new package bricks for x86, cuda

* Fixed complaints from "spack style" that CI found

* add license comment at top

Co-authored-by: drhansj <drhansj@berkeley.edu>
Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
2022-05-26 07:40:11 -07:00