Commit graph

32064 commits

Author SHA1 Message Date
Manuela Kuhn
5e7f989019
py-jinja2: add conflict for py-markupsafe@2.0.2 (#38913)
* py-jinja2: add conflict for py-markupsafe@2.0.2

* Update var/spack/repos/builtin/packages/py-jinja2/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-15 18:05:15 -05:00
Manuela Kuhn
319ef0f459
py-shiboken: fix build by restricting dependencies (#38900)
* py-shiboken: fix build by restricting dependencies

* Update var/spack/repos/builtin/packages/py-shiboken/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Remove conflict

* Remove py-markupsafe conflict

* Update var/spack/repos/builtin/packages/py-shiboken/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-15 18:57:35 -04:00
Manuela Kuhn
a9d5f24791
py-furo: add new package (#38904) 2023-07-15 17:16:34 -05:00
Manuela Kuhn
74d5da43a8
py-sphinx-rtd-theme: add 1.2.2 and py-sphinxcontrib-jquery: add 4.1 (#38896) 2023-07-15 16:25:58 -05:00
Elliott Slaughter
829b4fe8fe
py-cupy: Add 11.3.0, 11.4.0, 11.5.0, 11.6.0, 12.0.0, 12.1.0 (#38911)
* py-cupy: Add 11.3.0, 11.4.0, 11.5.0, 11.6.0, 12.0.0, 12.1.0.

* Clean up version bounds.
2023-07-14 21:12:31 -07:00
Jonas Thies
5672c64356
add a phist patch to avoid trying to compile SSE code if that is not … (#38806)
* add a phist patch to avoid trying to compile SSE code if that is not available.

* phist: make the avoid-sse patch more robust because compiler on ARM system still tried to compile SSE code
2023-07-14 21:10:57 -07:00
Richard Berger
1f58ac5ed3
spiner: update dependencies (#37367)
* spiner: update dependencies
* spiner: add v1.6.1 and updated dependency
2023-07-14 20:07:17 -04:00
Massimiliano Culpo
206a0a1658
legion package: use conditional variants for gasnet (#38902) 2023-07-14 14:44:15 -07:00
Michael Kuhn
b72d0e850d
lmdb: add 0.9.31 (#38892) 2023-07-14 11:04:16 -07:00
Thomas Madlener
29835ac343
podio: add 0.16.6 tag and mark older releases as deprecated (#38891)
* podio: Add latest tag
* podio: Deprecate older versions
2023-07-14 11:03:08 -07:00
G-Ragghianti
e276131b2a
new release and bug fix on check() (#38901) 2023-07-14 10:57:11 -07:00
Adam J. Stewart
c5f9ae864a
GDAL: add v3.7.1 (#38884) 2023-07-14 13:23:01 -04:00
Harmen Stoppels
ac5976d17d
Remove unused context manager (#38897) 2023-07-14 18:41:30 +02:00
Vicente Bolea
de719e9a4b
adios2: add catalyst variant (#38852) 2023-07-14 08:51:28 -07:00
Harmen Stoppels
f30ede1ab8
ci: remove aws-ahug (#38777) 2023-07-14 10:49:57 -05:00
dependabot[bot]
9e0f1f8998
build(deps): bump actions/setup-python from 4.6.1 to 4.7.0 (#38887)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.6.1 to 4.7.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](bd6b4b6205...61a6322f88)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-07-14 15:48:29 +00:00
Manuela Kuhn
ee335c0d53
py-protobuf: add 4.23.3 (#38614)
* py-protobuf: add 4.23.3

* protobuf: add 3.23.3

* py-protobuf: disable cpp variant for @4.22:
2023-07-14 10:38:23 -05:00
Manuela Kuhn
0c986da030
py-simplejson: add 3.19.1 (#38898) 2023-07-14 10:34:33 -05:00
Adam J. Stewart
0d5d9524f2
py-lightly: add v1.4.12 (#38883) 2023-07-14 10:49:18 -04:00
Taillefumier Mathieu
c94137f6ea
Use sirius namespacing for cmake (#38707)
* Use sirius namespacing for cmake

* Formating

* Fix lapack variables
2023-07-14 10:43:49 -04:00
Wouter Deconinck
9259a6aae4
xrootd: new versions 5.6.0, 5.6.1 (#38844) 2023-07-14 08:50:52 -05:00
Rocco Meli
244dfb3a35
Fix issue on cray with super call (#38895) 2023-07-14 10:00:02 +00:00
Harmen Stoppels
e16397b5d8
disable superlu test (#38894) 2023-07-14 10:53:16 +02:00
Tamara Dahlgren
2e9e7ce7c4
Bugfix/spack spec: read and use the environment concretizer:unification option (#38248)
* Bugfix: spack.yaml concretizer:unify needs to be read and used
* Optional: add environment test to ensure configuration scheme is used
* Activate environment in unit tests
  A more proper solution would be to keep
  an environment instance configuration as
  an attribute, but that is a bigger refactor
* Delay evaluation of Environment.unify
* Slightly simplify unit tests

---------

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-13 23:43:20 +02:00
Adam J. Stewart
f802b64e7a
Update TensorFlow ecosystem (#38747)
* Update TensorFlow ecosystem

* Re-add +cpp

* Do not use system protobuf

* Let bazel auto-detect macOS SDK version

* Unnecessary duplicated dep

* Remove unused import
2023-07-13 14:42:07 -05:00
Sergey Kosukhin
afe6f7ed79
eccodes: fix a few issues in the recipe (#38873)
* explicitly disable the Python 2 interface

* drop obsolete cmake argument HDF5_ROOT for newer versions

* set PYTHON_EXECUTABLE only when needed
2023-07-13 13:53:19 -04:00
Richard Berger
82d41a7be4
FleCSI updates (#38870)
* flecsi: update maintainers
* flecsi: allow newer HPX to be used
* flecsi: propagate ROCm variants when using legion
* flecsi: add v2.2.1
2023-07-13 10:19:11 -07:00
Mikael Simberg
412a09e78b
Add keep_werror = "specific" to mpich (#38861) 2023-07-13 09:27:03 -07:00
Harmen Stoppels
fbc0956d19
ccache: 4.8.2 (#38874) 2023-07-13 09:14:06 -07:00
Harmen Stoppels
dcb4bc3c54
ca-certificates-mozilla: add 2023-05-30 (#38875) 2023-07-13 09:12:46 -07:00
Manuela Kuhn
1ac2f34333
foonathan-memory: add 0.7-3 (#38879) 2023-07-13 08:59:14 -07:00
Harmen Stoppels
033eb77aa9
spack buildcache push: improve argparse (#38876) 2023-07-13 16:01:09 +02:00
Harmen Stoppels
522d9e260b
mirrors: distinguish between source/binary mirror; simplify schema (#34523)
Allow the following formats:

```yaml
mirrors:
  name: <url>
```

```yaml
mirrors:
  name:
    url: s3://xyz
    access_pair: [x, y]
```

```yaml
mirrors:
  name:
    fetch: http://xyz
    push:
      url: s3://xyz
      access_pair: [x, y]
```

And reserve two new properties to indicate the mirror type (e.g.
mirror.spack.io is a source mirror, not a binary cache)

```yaml
mirrors:
  spack-public:
    source: true
    binary: false
    url: https://mirror.spack.io
```
2023-07-13 11:29:17 +00:00
Massimiliano Culpo
3261889e3a
spack audit: allow skipping version checks from package.py (#28372)
A few packages have version directives evaluated
within if statements, conditional on the value of
`platform.platform()`.

Sometimes there are no cases for e.g. platform=darwin and that
causes a lot of spurious failures with version existence
audits.

This PR allows expressing conditions to skip version
existence checks in audits and avoid these spurious reports.
2023-07-13 06:47:47 -04:00
Harmen Stoppels
161b30a32f
Add type hints to spack.installer (#38872) 2023-07-13 10:41:19 +00:00
Adam J. Stewart
b67f1f395b
Add missing space in error msg (#38863) 2023-07-13 10:24:02 +02:00
dependabot[bot]
33c2fd7228
build(deps): bump docker/setup-buildx-action from 2.9.0 to 2.9.1 (#38868)
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.9.0 to 2.9.1.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](2a1a44ac4a...4c0219f9ac)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-07-13 10:23:22 +02:00
Manuela Kuhn
7d5007b5e4
Restrict py-pip version for packages using --install-option (#38837) 2023-07-13 10:00:40 +02:00
Adam J. Stewart
bb7f437bf5
Standardize subcommand help strings (#38804)
### Rationale

While working on #29549, I noticed a lot of inconsistencies in our argparse help messages. This is important for fish where these help messages end up as descriptions in the tab completion menu. See https://github.com/spack/spack/pull/29549#issuecomment-1627596477 for some examples of longer or more stylized help messages.

### Implementation

This PR makes the following changes:

- [x] help messages start with a lowercase letter.
- [x] Help messages do not end with a period
- [x] the first line of a help message is short and simple

    longer text is separated by an empty line
- [x] "help messages do not use triple quotes" 

    """(except docstrings)"""
- [x] Parentheses not needed for string concatenation inside function call
- [x] Remove "..." "..." string concatenation leftover from black reformatting
- [x] Remove Sphinx argument docs from help messages

The first 2 choices aren't very controversial, and are designed to match the syntax of the `--help` flag automatically added by argparse. The 3rd choice is more up for debate, and is designed to match our package/module docstrings. The 4th choice is designed to avoid excessive newline characters and indentation. We may actually want to go even further and disallow docstrings altogether.

### Alternatives

Choice 3 in particular has a lot of alternatives. My goal is solely to ensure that fish tab completion looks reasonable. Alternatives include:

1. Get rid of long help messages, only allow short simple messages
2. Move longer help messages to epilog
3. Separate by 2 newline characters instead of 1
4. Separate by period instead of newline. First sentence goes into tab completion description

The number of commands with long help text is actually rather small, and is mostly relegated to `spack ci` and `spack buildcache`. So 1 isn't actually as ridiculous as it sounds.

Let me know if there are any other standardizations or alternatives you would like to suggest.
2023-07-13 00:18:23 -07:00
Vicente Bolea
6312ae8464
vtk-m: modernize vtk-m recipe (#38726) 2023-07-13 08:21:38 +02:00
Harmen Stoppels
3828ae2a52
ci: populate caches in before script (#38762)
* ci: run spack list in power ci

Let's see if Spack itself is the bottleneck in CI...

* rebuild curl in CI

* more of the same please!

* drop the profiler

* undo rebuildme test in ci variant

* add comment for posterity

* enable profiling

* trigger CI

* See how it goes now that perf regressions are fixed on develop

* try shorter poll intervals

* Revert "try shorter poll intervals"

This reverts commit d60c34ad3eceead0c13a5277cf8e783fd42b7458.

* Remove spec.format call in Database._get_matching_spec_key

* once more in ci please

* undo irrelevant changes

* run spack list in before script

* test in ci

* -:

* Undo CI testing
2023-07-12 18:12:22 -05:00
dependabot[bot]
c2bdb4600a
build(deps): bump docker/setup-buildx-action from 2.8.0 to 2.9.0 (#38783)
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.8.0 to 2.9.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](16c0bc4a6e...2a1a44ac4a)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-07-12 17:18:05 -04:00
Jonathon Anderson
90208da8a5
containers: retain shallow git data (#37734) 2023-07-12 21:03:10 +00:00
Michael Fink
c8026c3c87
Add path to MPI executables to ^mpi dependents (#35758) 2023-07-12 13:58:43 -05:00
G-Ragghianti
f895f80bc2
Package papi: update for smoke tests (#38711)
* Adding papi smoke tests
* smoke tests
* update to new test framework
2023-07-12 11:38:57 -07:00
Stephan Grein
0ca11d7033
Fix fmt and spdlog versions for micromamba. (#38739)
The spdlog project precisely states/depends which fmt version should
be used for compatibility. Latest version 1.11.0 depends explictly on
fmt 9.1.0. Without fixed version micromamba build fails when using spack
install micromamba on e.g. Rockylinux 8.5.
2023-07-12 11:24:26 -07:00
Dax Lynch
4fa7dc03ae
py-callmonitor: added new package (#38764)
* py-callmonitor: added new package

* depends_on numpy

* Update var/spack/repos/builtin/packages/py-callmonitor/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-07-12 11:19:57 -07:00
Vicente Bolea
5ba99b8eb2
adios2: add aws variant (#38857) 2023-07-12 11:14:47 -07:00
Samuel Browne
78b24b45f6
Add gettext as a dependency of bison (#35979)
The 'bison' executable requires libtextstyle to run.  I think this was
usually satisfied because gettext is often installed with the OS, or
brought in accidentally via perl/m4.

Looks like the libtextstyle library dependency started in Bison 3.4
2023-07-12 14:01:12 -04:00
kjrstory
c2bafd7b7f
openfoam-org: add precision option (#38746) 2023-07-12 14:49:45 +02:00