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Author SHA1 Message Date
Tom Payerle
7c12ca1d83
m4: Fix issue compiling with new intel compilers (#18894) (#19273) 
Original version added --no-gcc to CFLAGS when compiling with intel
compilers.  This does not appear to be needed and indeed causes problems
(see #18894) with newer intel compilers; I have modified so it is not
added for intel@19: (I confirmed it is needed/works for intel@20, based
on comments in #18854 looks like holds for intel@19 as well).

(Also fix old formatting issue flake8 was complaining about)
 2020-10-12 14:13:11 -05:00
Mark Olesen
7a562d4045
openfoam: update for version 20.06 patch 2020-10-12 (#19275) 
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
 2020-10-12 14:09:32 -05:00
Joe Koning
7a8974c2d8
Update py-redis (#19063) 
* Update of py-redis for merlin-1.7.5

* Add hiredis variant and python versions for 3.5.x versions.

* Update var/spack/repos/builtin/packages/py-redis/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-10-12 14:05:09 -05:00
Evan Bollig
7b0e628016
Added slurm version 20-02-4-1 and support to build slurmrestd (#19249) 
* Added slurm version 20-02-4-1 and support to build slurmrestd

* cleanup formatting

* cleanup libjwt to pass unittests

* missed one boilerplate

* hacking a pass in unittests

* defer to default install routine in libjwt
 2020-10-12 13:52:23 -05:00
Dr. Christian Tacke
7a28b91bb8
singularity: added v3.6.3 (#19272) 2020-10-12 19:28:28 +02:00
darmac
b50fe3cb6b
evemu: added new package at v2.7.0 (#19013) 2020-10-12 18:14:55 +02:00
darmac
7083a542b6
libnetfilter-conntrack: new package at v1.0.4 (#19012) 2020-10-12 18:13:29 +02:00
Thomas Madlener
bead81fab5
[whizard] Disable parallel builds to avoid race condition (#19270) 2020-10-12 17:07:21 +02:00
Massimiliano Culpo
2399c2e78d
autotools: refactor search paths for aclocal in its own method (#19258) 
This commit refactors the computation of the search path
for aclocal in its own method, so that it's easier to reuse
for packages that need to have a custom autoreconf phase.

Co-authored-by: Toyohisa Kameyama <kameyama@riken.jp>
 2020-10-12 16:35:52 +02:00
Harmen Stoppels
2d9f692d6c
libamd_comgr.so.1 is linked to by libamdhip64.so.3, so it should be a link dep (#19025) 2020-10-12 16:28:48 +02:00
darmac
99278d9863
rng-tools: added new package at v6.10 (#19011) 2020-10-12 16:23:35 +02:00
darmac
c2517a31bf
openwsman: added new package at v2.7.0 (#19009) 2020-10-12 16:20:35 +02:00
darmac
89cd3cfdb7
glib-networking: added new package at v2.66.0 (#19008) 2020-10-12 16:19:57 +02:00
darmac
39ded3fa0f
ecdsautils: new package at v0.3.2 (#19007) 2020-10-12 16:18:32 +02:00
darmac
c49e66a06e
conserver: added new package at v8.2.5 (#18988) 2020-10-12 15:17:32 +02:00
darmac
e929cb4d51
cc65: added new package at v2.18 (#18989) 2020-10-12 15:03:46 +02:00
darmac
93f8b14de5
console-bridge: added new package at v1.0.1 (#18986) 2020-10-12 14:39:41 +02:00
Dr. Christian Tacke
fe984b994d
root: added more 6.20.* versions, switch preferred (#19265) 2020-10-12 14:12:19 +02:00
darmac
3a914f83c3
cmark: added new package at v0.29.0 (#18985) 2020-10-12 14:07:10 +02:00
Glenn Johnson
9915ce0315
Change how CUDA variants are handled for libbeagle (#18984) 
- Override the cuda_arch variant setup, with multi=False to ensure one
  value is selected
- Use a conflicts statement rather than InstallError
 2020-10-12 14:06:26 +02:00
Glenn Johnson
bd8c73ef18
Change how CUDA variants are handled (#18983) 
- Override the cuda_arch variant setup, with multi=False to ensure one
  value is selected
- Use a conflicts statement rather than InstallError
 2020-10-12 14:00:56 +02:00
Frédéric Simonis
3107f0367b
precice: added v2.1.1 (#19264) 2020-10-12 13:25:51 +02:00
darmac
023db4696e
asciidoc-py3: new patckage at v9.0.2 (#18920) 2020-10-12 13:23:48 +02:00
Glenn Johnson
eb03e648ec
Fix r-devtools package (#18981) 
The r-devtools package was not installable due to a few issues.

- The rstudioapi spec was for 0.11.0 but the rstudioapi version is
  actually 0.11. This caused an error during concretization.
- Set r-usethis to depend on rlang@0.4.3: rather than r-lang@0.4.3.
- Set r-usethis to depend on r-gh@1.1.0: rather than r-gh@1.1.0.
- Added version r-gh-1.1.0 as it is not currently present in spack.
 2020-10-12 13:22:41 +02:00
David M. Rogers
d431fcd904
Added CUDAHOSTCXX variable needed to compile with cuda and mpi. (#19254) 
* Added CUDAHOSTCXX variable needed to compile with cuda and mpi.

* Added guard for setting CUDAHOSTCXX with MPI.

* Acceptable working version of dealii+cuda+mpi.
 2020-10-12 02:28:06 -07:00
h-denpo
88794f56ed
itstool: modify depends_on('libxml2+python', type=('build', 'run')) (#19020) 2020-10-12 10:29:30 +02:00
Adam J. Stewart
1b9dce6b26
Python: add v3.9.0 (#19260) 2020-10-11 21:16:51 -07:00
Adam J. Stewart
759e8ee4c2
CUDA: update maintainers (#19262) 2020-10-11 21:11:17 -07:00
Toyohisa Kameyama
683ecb3f6e
mpifileutils: Add patch for aarch64. (#18724) 
* mpifileutils: Add patch for aarch64.

* Update patch and limit version for apply patch.
 2020-10-11 18:49:38 -05:00
Jean-Paul Pelteret
fe239c83fc
deal.II: Further modernisation and improvements (#19253) 2020-10-11 15:48:09 -04:00
Daniel Arndt
46cae921b9
Update datatransferkit (#19239) 
Conflicts:
	var/spack/repos/builtin/packages/datatransferkit/package.py
	var/spack/repos/builtin/packages/xsdk/package.py
 2020-10-11 13:27:54 -05:00
Roberto Di Remigio
7f46c11fda
Update XCFun with stable releases (#18784) 
* Update XCFun with stable releases

* Fix lint
 2020-10-10 21:14:15 -05:00
darmac
0ed8bbe765
Add new package: libgssglue (#18774) 2020-10-10 21:11:31 -05:00
darmac
be530949bb
Add new package: pinfo (#18806) 2020-10-10 21:11:03 -05:00
darmac
794f2c7510
Add new package: xdelta (#18827) 2020-10-10 21:09:55 -05:00
tcojean
a691e75af3
Ginkgo: new version and HIP support (#18842) 
* Bump the Ginkgo version and add HIP support.

* Add the HIP variant to Ginkgo.

* Make HIP support work, check C++ compatibility.
 2020-10-10 21:08:58 -05:00
Tom Payerle
793ffd8d9c
cpio: Fix issue compiling with newer intel compilers (#18854) (#18855) 
* cpio: Fix issue compiling with newer intel compilers (#18854)

Do not add --no-gcc for recent intel compilers (e.g. 20.x)

* cpio: Remove --no-gcc flag for intel@19 as well as intel@20

Based on comments from @nrichart, removing --no-gcc option for intel@19
as well as intel@20
 2020-10-10 21:07:04 -05:00
Toyohisa Kameyama
a408400619
audacious: add link type build to glib. (#18884) 2020-10-10 21:05:18 -05:00
Kelly (KT) Thompson
933aacf7b6
Provide draco-7_8_0. (#18947) 
* Provide draco-7_8_0.

+ Also provide a patchfile for draco-7_6_0 to support CrayPE builds.
+ Version 7.8.0 has a new variant `+caliper`.
+ Sort dependencies alphabetically after grouping by required and optional.

* Remove patchfile that is no longer needed.

+ Newer versions of draco do not require this patch.
+ Older versions of draco are not supported for spectrum-mpi.

* Change new variant +caliper to default to False.
 2020-10-10 21:02:00 -05:00
darmac
e8306e8f22
Add new package: less (#18952) 2020-10-10 21:00:54 -05:00
darmac
ec6f13aefa
Add new package: lsscsi (#18953) 2020-10-10 20:59:21 -05:00
darmac
6e4cf08984
Add new package: libnftnl (#18954) 2020-10-10 20:58:53 -05:00
darmac
edfac1a04f
Add new package: authd (#18955) 2020-10-10 20:58:29 -05:00
darmac
ff5d95da95
Add new package: backupninja (#18957) 2020-10-10 20:55:58 -05:00
darmac
3a59057f74
Add new package: universal-ctags (#18962) 2020-10-10 20:55:33 -05:00
darmac
28564620f6
Add new package: vtable-dumper (#18964) 2020-10-10 20:54:43 -05:00
Derek Ryan Strong
c9bee59bc3
pandoc: add variant for texlive (#18967) 
* pandoc: add variant for texlive

Modifies the pandoc package by adding a variant for texlive, which is only needed for PDF output. Enables this variant by default.

* Fix whitespace
 2020-10-10 20:53:51 -05:00
Toyohisa Kameyama
6383ef808d
poplpler: fix patch for 0.90.1. (#18969) 2020-10-10 20:53:05 -05:00
Sergey Kosukhin
5a49c2bcaf
parallel-netcdf: patch for PGI on Cray (#18972) 2020-10-10 20:50:25 -05:00
t-nojiri
b7ed6b4fe0
jellyfish@1.1.11: Change the type of the array dna_codes to the signed type. (#19019) 
* jellyfish@1.1.11: Change the type of the array dna_codes to the signed type.

* jellyfish@1.1.11: Add patch file
 2020-10-10 20:33:08 -05:00
Michael Kuhn
588cf7e03c
julea: Fix dependency typo and add new optional rocksdb dependency (#19045) 2020-10-10 20:28:56 -05:00
vvolkl
e37e66abd1
[dd4hep] update version v1.14.1 (#19056) 
up
 2020-10-10 20:26:44 -05:00
t-nojiri
1bd825674a
fl: Fix for aarch64 (#19089) 
* fl: Fix for aarch64

* fl: Revise the points indicated by the review.
 2020-10-10 20:25:36 -05:00
Tom Payerle
b3eb07cae0
superlu-mt: Add openmp flag to link command when using OpenMP (#19096) 
Fix for #19095

When given +openmp, add the correct compiler openmp flag to the link
stage.  This seems to be required for %intel compilers.
I do this for all compilers, not just %intel, because it does not seem
to harm anything and might be beneficial for others (and just seems
'correct').
 2020-10-10 20:24:08 -05:00
Pariksheet Nanda
9c5f0cab1d
meme: newer tarballs use a hyphen (#19222) 
* meme: newer tarballs use a hyphen

* meme: remove trailing whitespace for flake8
 2020-10-10 20:12:39 -05:00
Keita Iwabuchi
ea101daf81
Update Metall package to v0.4 and v0.5 (#19223) 
* Metall: add version 0.2

* Add Metall v0.3

* Update Metall package to v0.4 and v0.5.
 2020-10-10 20:11:40 -05:00
Dingwen Tao
03b9f0452c
Add cuSZ (#19228) 
Co-authored-by: Dingwen Tao <tao@cs.ua.edu>
 2020-10-10 20:10:55 -05:00
Melven Roehrig-Zoellner
ac91328c69
eigen: add a patch for 3.3.8 (#19229) 
* eigen: add a patch for 3.3.8

* eigen: try to fix indenting
 2020-10-10 20:09:21 -05:00
Hadrien G
528f86ddc4
[acts] Add version 1.1 (#19230) 2020-10-10 20:08:19 -05:00
Thomas Madlener
31772844d8
[whizard] Add compiler constraints and minimal ocaml version (#19231) 2020-10-10 20:07:43 -05:00
MichaelLaufer
ba04e8b890
parallel-netcdf: added burst buffer variant (#19237) 
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
 2020-10-10 19:56:51 -05:00
Andrew Gaspar
08a61006a5
Rust 1.47.0 (#19240) 2020-10-10 17:01:38 -05:00
h-denpo
cd800c20d3
asdcplib: Added PATH of openssl installed by spack to configure_args. (#19243) 2020-10-10 16:59:19 -05:00
Stan Tomov
160c00e3f7
Add MAGMA v2.5.4 release (#19245) 
This release does not have conflict with CUDA 11.
 2020-10-10 16:58:37 -05:00
darmac
3dd41548f6
Add new package: powertop (#18904) 2020-10-10 16:52:44 -05:00
Sajid Ali
9c56495503
py-scikit-image: bump version (#19153) 
* py-scikit-image: bump version

* address reviewer comments

* address reviewer comments

* address reviewer comments

* py-scikit-image : update dependencies : part 2

* cloudpicke is a docs only dependency, enable it with a variant if necessary

* address reviewer comments

* cleanup build vs run deps

* address reviewer comments
 2020-10-10 16:52:00 -05:00
Jean-Paul Pelteret
69eb51dbfe
dealii: Reorganize package and add some new settings (#19137) 
New variants:
- cxxstd
- examples
 2020-10-10 09:20:53 -04:00
Geoff Womeldorff
35a9626ae9
Add package for FLCL (#19252) 
* Initial cut at FLCL spackage. Works with GCC so far.

* Update spackage to list release which supports spack. Add @agaspar as a maintainer. Default unit tests to disabled when building with spack.

* Change url to 0.2.

* Nope, 0.3.
 2020-10-09 17:37:17 -06:00
Danny Taller
012b4279b6
camp: new package (#19235) 2020-10-09 15:25:06 -07:00
Brian Van Essen
9a46ee0085
Fixed the dependency of newer OpenMPI on current hwloc. Pathch (#17917) 
contributed by Thorsten Kurth.
 2020-10-09 15:29:58 -05:00
Andreas Baumbach
47e253f7fe
Add new package: bitsery (#19090) 2020-10-09 11:17:33 -05:00
Andreas Baumbach
830b30b8d5
Patch cereal (#19091) 
Change-Id: I9fe2a1490c8c31a4174aca4ed2e270aa1efa1a50

Co-authored-by: Eric Müller <mueller@kip.uni-heidelberg.de>
 2020-10-09 11:17:11 -05:00
Shahzeb Siddiqui
796561ed82
add package py-lmodule version 0.1.0 (#18856) 
* add package py-lmodule version 0.1.0

Lmodule is tested with lmod >= 7.x. Lmod 6 has different json
structure in spider which is not supported by lmodule
 2020-10-08 17:52:42 -05:00
Tom Payerle
47a7cd6a93
py-charm4py: new package (#18666) 
* py-charm4py: new package

Charm++ for python

Installation notes:

1) charm4py ships with its own charm++ tarball.  It really wants
to use the version it ships with. It also builds charm++ in a special way to
produce libcharm.so (but not charmc, etc), so it does not seem
worthwhile to try to hack to build using a spack installed charmpp.

2) Originally, the installation was failing due to unresolved cuda
symbols when setup.py was doing a ctypes.CDLL of libcharm.so (in order
to verify version?).  This appears to be due to the fact that
libcharm.so had undefined cuda symbols, but did not show libcudart.so as
a dependency (in e.g. ldd output).  To fix this, I had to add
libcudart.so explicitly when linking libcharm.so, but since setup.py
untars a tarball to build libcharm, the solution was a tad convoluted:
2a) Add a patch in spack to py-charm4py which creates a patchfile
"spack-charm4py-setup.py.patch" which will modify a Makefile file (after it
is untarred) to add the flags in env var SPACK_CHARM4PY_EXTRALIBS to
the link command for libcharm.so
2b) The spack patch file also patches setup.py to run patch using the
aforementioned patchfile to patch the Makefile after it is untarred, and
sets the SPACK_CHARM4PY_EXTRALIBS variable appropriately in the setup
environment.

* Update var/spack/repos/builtin/packages/py-charm4py/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-charm4py/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-charm4py: flake8 fixes

remove useless import

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-10-08 16:29:47 -05:00
perrymil
adf0ac1902
Pymol 2.4 package update (#18618) 
* Update Package, Pymol 2.4

* Fixed flake8 stuff

* more style fixes

* missing ( at EOF

* added py-pymol 2.3 back this

* extra line removal

* white space in empty line removal

* added libpng and py-pyqt5 to prefix_path
 2020-10-08 15:13:03 -05:00
darmac
f0e6d6619b
Add new package: py-bmap-tools (#18810) 2020-10-08 15:11:01 -05:00
darmac
7de890fe22
Add new package: py-azote (#18960) 2020-10-08 15:09:30 -05:00
darmac
9366fe261b
Add new package: py-walinuxagent (#18961) 2020-10-08 15:08:38 -05:00
Joe Koning
a7de469f58
Update of py-merlin for merlin-1.7.5 (#19069) 2020-10-08 14:56:10 -05:00
Andrew Gaspar
ee8d225757
Update py-fortran-language-server (#19156) 
* Update py-fortran-language-server

* Restore v1.11.1
 2020-10-08 14:44:32 -05:00
takanori-ihara
cbaa78cb4a
fujitsu-ssl2: Add new package (#18498) 
fujisu-ssl2: Add new package with thread-parallel, SVE and scalapack support
 2020-10-08 09:36:00 -07:00
rvinaybharadwaj
cb11a58fdd
Add mlperf-deepcam (#19206) 
* Add mlperf-deepcam

* Change mlperf-deepcam to reflect updated name of dependency
 2020-10-08 08:24:50 -06:00
rvinaybharadwaj
8b0a9f482f
Add py-wandb (#19168) 2020-10-08 07:46:07 -06:00
rvinaybharadwaj
865e483abc
Add py-sentry-sdk (#19173) 2020-10-08 07:04:01 -06:00
rvinaybharadwaj
bd8e307e82
Add py-sanic (#19174) 
* Add py-sanic

* Update package.py

Co-authored-by: Christoph Junghans <christoph.junghans@gmail.com>
 2020-10-08 05:59:06 -06:00
t-nojiri
d0bb991838
openimageio: added v2.2.7.0 (#19227) 2020-10-08 13:02:12 +02:00
rvinaybharadwaj
dc6132ff70
Add py-apache-beam (#19204) 2020-10-07 22:07:39 -06:00
rvinaybharadwaj
e70d9e3971
Add py-avro-python3 (#19202) 
* Add py-avro-python3

* Adding deprecation warning

* Updating python versions

* Fixing docstring indentation

* Update package.py

Co-authored-by: Christoph Junghans <christoph.junghans@gmail.com>
 2020-10-07 21:28:13 -06:00
rvinaybharadwaj
a83f6bdb46
Add py-httpx (#19185) 2020-10-07 20:59:51 -06:00
rvinaybharadwaj
2c387a3674
Add py-fastavro (#19196) 2020-10-07 20:17:05 -06:00
rvinaybharadwaj
26c1eb57db
Add py-h2 (#19191) 2020-10-07 20:13:58 -06:00
rvinaybharadwaj
804b5f33f4
Add py-httpcore (#19187) 2020-10-07 20:13:34 -06:00
rvinaybharadwaj
11bcdc6ad1
Add py-falcon (#19197) 2020-10-07 14:37:23 -06:00
rvinaybharadwaj
d1bc0b6925
Add py-mlperf_logging (#19182) 
* Add py-mlperf_logging

* replacing _ by - in package name
 2020-10-07 14:32:11 -06:00
rvinaybharadwaj
3401404a26
Add py-uvloop (#19169) 2020-10-07 14:14:47 -06:00
rvinaybharadwaj
5580dbd899
Add py-crcmod (#19207) 
* Add py-crcmod

* Updating homepage
 2020-10-07 14:14:19 -06:00
rvinaybharadwaj
fe728a9741
Add py-future (#19195) 2020-10-07 13:39:10 -06:00
rvinaybharadwaj
6266ce9a9f
Add py-rfc3986 (#19176) 2020-10-07 13:34:30 -06:00
rvinaybharadwaj
0a363b4c5d
Add py-snappy (#19171) 2020-10-07 13:32:47 -06:00
rvinaybharadwaj
406491e239
Add py-grpcio (#19193) 2020-10-07 13:30:16 -06:00
rvinaybharadwaj
2d44d135fd
Add py-gitpython (#19194) 
* Add py-gitpython

* removing 3.1.7 checksum
 2020-10-07 13:27:51 -06:00
rvinaybharadwaj
2b5bef3685
Add py-pytorch-gradual-warmup-lr (#19178) 
* Add py-pytorch-gradual-warmup-lr

* Fixed license header

Co-authored-by: Robert Pavel <rspavel@lanl.gov>
 2020-10-07 13:26:26 -06:00
zhiyuanzhai
38bfb81e2b
macOS 11 version check for Perl (#19210) 
* Fix 'unexpected product version' error for macOS 11.0

* Adjustment: add the minimum version that this macOS patch is necessary.

* Adding a keyword to prevent the patch being applied to systems other than darwin (macOS)

* Deleting quotation marks
 2020-10-07 13:55:35 -05:00
rvinaybharadwaj
215183524c
Add py-backports-lzma (#19201) 
* Add py-backports-lzma

* Fixing python version compatibility
 2020-10-07 10:38:29 -06:00
rvinaybharadwaj
91047a9722
Add py-sniffio (#19170) 2020-10-07 10:36:33 -06:00
rvinaybharadwaj
59c8761b9e
Add py-shortuuid (#19172) 2020-10-07 10:34:42 -06:00
rvinaybharadwaj
5938a5d751
Add py-rq (#19175) 2020-10-07 10:33:25 -06:00
rvinaybharadwaj
7e4c8907da
Add py-redis (#19177) 2020-10-07 10:30:42 -06:00
rvinaybharadwaj
77919e6693
Add py-pyspark (#19179) 2020-10-07 10:29:20 -06:00
rvinaybharadwaj
8956ee3bd8
Add py-pure-eval (#19180) 2020-10-07 10:28:56 -06:00
rvinaybharadwaj
a9de94bbd4
Add py-hyperframe (#19184) 2020-10-07 10:27:47 -06:00
rvinaybharadwaj
cde510b5f1
Add py-httptools (#19186) 2020-10-07 10:27:14 -06:00
rvinaybharadwaj
7d82276d0c
Add py-h11 (#19192) 2020-10-07 10:25:57 -06:00
rvinaybharadwaj
f8d4c74d8c
Add py-bottle (#19200) 
* Add py-bottle

* fixing python versions
 2020-10-07 10:24:28 -06:00
rvinaybharadwaj
a24844a206
Add py-hpack (#19189) 2020-10-07 10:20:47 -06:00
rvinaybharadwaj
8c9187c3b3
Add py-lz4 (#19183) 2020-10-07 10:20:14 -06:00
rvinaybharadwaj
09f910902a
Add py-chalice (#19199) 
* Add py-chalice

* fixing python versions
 2020-10-07 10:18:56 -06:00
rvinaybharadwaj
f98aa5f336
Add py-dockerpy-creds (#19198) 
* Add py-dockerpy-creds

* fixing python versions
 2020-10-07 10:17:31 -06:00
rvinaybharadwaj
1ee6e4f993
Add py-hstspreload (#19188) 2020-10-07 10:16:58 -06:00
rvinaybharadwaj
50c3e9ffea
Add py-watchdog (#19167) 2020-10-07 10:16:25 -06:00
arjun-raj-kuppala
09d0623be9
AMD ROCm 3.8.0 - roctracer-dev (#19086) 
* AMD ROCm 3.8.0 - roctracer-dev

* Update var/spack/repos/builtin/packages/roctracer-dev/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* added py-ply dependency

* remove py-ply

* Update var/spack/repos/builtin/packages/roctracer-dev/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-10-07 08:55:29 -05:00
arjun-raj-kuppala
4d45aca3ea
AMD ROCm rocm-gdb update with its dependency package - babeltrace (#19142) 2020-10-07 08:54:38 -05:00
Toyohisa Kameyama
a12b03b8d4
sollve: build on aarch64 (#19123) 2020-10-07 08:54:07 -05:00
Robert Underwood
f83bd360c6
sz: fix fetch url for SZ for older releases (#19215) 
fixes #19213
 2020-10-06 18:12:53 -07:00
rvinaybharadwaj
0553ef32d9
py-arrow: add version 0.16.0 (#19203) 2020-10-06 17:44:26 -07:00
rvinaybharadwaj
7dbc07373d
New package: py-aiofiles (#19205) 2020-10-06 17:43:13 -07:00
Christoph Junghans
6b70597271
gromacs: add v2020.4 (#19208) 2020-10-06 14:52:48 -05:00
Melven Roehrig-Zoellner
d43522deeb
eigen: added v3.3.8 (#19165) 2020-10-06 16:00:26 +02:00
g-mathias
e2e018b68f
package cuda: fix for chmod error (#17596) 
* fix if cached cuda  is only rx

* use shell to install; rm chmod commands

* flake8 fix

* flake8 fix

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
 2020-10-06 07:45:27 -05:00
Robert Underwood
87ac0ae3e3
SZ package: add switch for builtin profiling support (#19127) 2020-10-05 22:30:16 -07:00
Adam J. Stewart
bfb9e8f667
py-pandas: add version 1.1.3 (#19152) 2020-10-05 22:27:45 -07:00
Mark C. Miller
460bd695a3
VisIt package: improve info message (#19159) 2020-10-05 22:26:32 -07:00
Erik Schnetter
630f1fe2b8
New package: FastTransforms (#19160) 2020-10-05 22:12:11 -07:00
Sheng Di
eabfea2e49
SZ package: update URL; add 2.1.10 (#19161) 2020-10-05 22:11:32 -07:00
Kelly (KT) Thompson
e36bb89b33
Extend patch for XL to also support XL+cuda. (#19116) 2020-10-05 20:21:17 -05:00
Jean-Paul Pelteret
9bd83636e4
New package: Taskflow (#19138) 2020-10-05 20:13:51 -05:00
Hervé Yviquel
7d4663ea5d
add gdrcopy 2.1 (#19151) 2020-10-05 20:08:17 -05:00
Chris de Graaf
95a46de7cb
Add Julia 1.5.2 (#19154) 2020-10-05 20:07:26 -05:00
arjun-raj-kuppala
b91d501f12
AMD ROCm - aomp 3.7.0/3.8.0 and rccl 3.8.0 update (#19034) 
* aomp 3.7.0 and rccl 3.8.0 update

* Bump up to ROCm 3.8.0 support on AOMP

* Create 0001-Add-amdgcn-to-devicelibs-bitcode-names-3.8.patch

* Create 0001-Add-amdgcn-to-devicelibs-bitcode-names.patch

* Update var/spack/repos/builtin/packages/aomp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-10-05 19:57:00 -05:00
arjun-raj-kuppala
dbba74debd
bump up rocm-debug-agent to ROCm 3.8.0 (#19037) 
* bump up rocm-debug-agent to ROCm 3.8.0

* removed extra url

* re-added url with new path
 2020-10-05 19:54:17 -05:00
Jonathan Maack
aabe210689
Closes #16303: Julia build fails with "ERROR: Invalid CPU name skylake_avx512." (#18745) 
* Fix 'Invalid CPU name' error for skylake avx512 #16303

* Change new julia versions to use tarballs

* Remove setting of MARCH
 2020-10-05 17:23:14 -05:00
Dr. Christian Tacke
4d586c598b
ftgl: Improve shared library building on macOS (#18970) 
Add -DCMAKE_MACOSX_RPATH=ON to cmake.
 2020-10-05 09:56:52 -05:00
Adam J. Stewart
5d70096e44
bazel: add latest version (#18991) 2020-10-05 09:53:10 -05:00
Adam J. Stewart
0d64020007
py-horovod: added versions up to v0.20.3 (#18977) 2020-10-05 16:22:33 +02:00
Adam J. Stewart
cb7a1ac2bf
py-ray: added new package at v0.8.7 (#19006) 2020-10-05 15:44:51 +02:00
Adam J. Stewart
a9c6964a1d
py-opencensus: added new package at v0.7.10 (#19004) 2020-10-05 15:10:42 +02:00
Adam J. Stewart
7ac96e63d2
py-opencensus-context: added new package at v0.1.1 (#19003) 2020-10-05 11:57:33 +02:00
Adam J. Stewart
1450038f92
py-gpustat: added new package at v0.6.0 (#18999) 2020-10-05 09:55:09 +02:00
Adam J. Stewart
3e7d9b4279
py-aioredis: added new package at v1.3.1 (#18996) 2020-10-05 09:54:40 +02:00
Adam J. Stewart
8ba3f30f5c
py-contextvars: added new package at v2.4 (#19149) 2020-10-05 09:20:48 +02:00
Adam J. Stewart
25cb2a68d3
py-immutables: added new package at v0.14 (#19148) 2020-10-05 07:32:03 +02:00
Joe Koning
eabfdba08f
Fix for py-cffi sha256sum issue (#19143) 
* Update of py-cffi for merlin-1.7.5

* Add new sha256sum for version 1.14.3
 2020-10-04 15:38:09 -05:00
Adam J. Stewart
80bbeaf629
TensorFlow: added new versions up to v2.3.1 (#18945) 2020-10-04 20:50:45 +02:00
Adam J. Stewart
6acdc52f06
py-msgpack: added v1.0.0 (#18993) 2020-10-04 20:49:44 +02:00
Adam J. Stewart
a0cc5b78c8
py-grpcio: added v1.32.0 (#18995) 2020-10-04 20:48:35 +02:00
Adam J. Stewart
688dee861a
py-colorful: added new package at v0.5.4 (#18997) 2020-10-04 20:46:23 +02:00
Adam J. Stewart
a99c9f93a1
py-google: added new package at v3.0.0 (#18998) 2020-10-04 20:45:05 +02:00
Adam J. Stewart
9a6ac5e809
py-hiredis: added new package at v1.1.0 (#19000) 2020-10-04 20:44:09 +02:00
Adam J. Stewart
e9d8804309
py-nvidia-ml-py: added new package at v11.450.51 (#19001) 2020-10-04 20:42:01 +02:00
Adam J. Stewart
aa3e88739f
py-nvidia-ml-py3: added new package at v7.352.0 (#19002) 2020-10-04 20:39:49 +02:00
Adam J. Stewart
d2b3ea24e4
py-py-spy: added new package at v0.3.3 (#19005) 2020-10-04 20:38:34 +02:00
Adam J. Stewart
8cf42b3e71
unrar: added v5.9.4, fix macOS build (#19136) 2020-10-04 20:36:31 +02:00
Adam J. Stewart
0cd2728843
py-vermin: added v0.10.5, fixed compilation on MacOS (#19017) 2020-10-04 20:32:56 +02:00
Simon Frasch
543008069d
spla: added v1.2.0 (#19146) 2020-10-04 20:30:42 +02:00
Sinan
fd8fd189c7
package/qgis: add new versions (#19014) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2020-10-03 21:59:17 -05:00
MichaelLaufer
b9b0d1c2cb
Added WPS package, cleaned up WRF package (#18711) 
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
 2020-10-03 21:26:33 -05:00
Joe Koning
2b56707b7e
Py-celery: update for merlin-1.7.5 (#19079) 2020-10-03 20:29:29 -04:00
Seth R. Johnson
670f3a5e4c
Trilinos: restrict SuperLU-dist version (#19044) 
SuperLU v6.3.0 changes the name of numerous structures, causing errors
in Amesos up through Trilinos 13.
 2020-10-02 14:20:49 -07:00
Jonathan Maack
42c3327e5b
Coin HSL package: add version 2019.05.21 (#19047) 2020-10-02 14:19:00 -07:00
Jerome Soumagne
1ca753e5a6
mercury package: turn off post limit by default (#19048) 
Prevents potential deadlocks
 2020-10-02 14:14:55 -07:00
Tom Payerle
a07c3d2aa8
metis: Ignore pragma omp warnings/errors with %intel (#19049) 
It looks like intel compilers generate warnings for omp pragmas when
openmp flag is not given, which due to other flags set get promoted to
errors.

This adds a flag to ignore the pragma omp warnings (icc diagnostic
number 3180 on %intel@14:).
 2020-10-02 14:08:48 -07:00
codeandkey
c4a0c50036 trimmomatic: add 0.39 2020-10-02 14:01:45 -07:00
Jed Brown
ba18675bd1
libceed 0.7 and occa 1.1.0 (#19055) 2020-10-02 14:00:53 -07:00
Andreas Baumbach
9644332a13
openblas: patch to build with apple-clang@12.0.0 (#19057) 2020-10-02 13:57:46 -07:00
Jose E. Roman
b18d597c8b
SLEPc: add version 3.14 (#19058) 2020-10-02 13:54:23 -07:00
Sajid Ali
9ba83e6cc6
lammps: choose FFT implementation based on provider (#19060) 2020-10-02 13:53:50 -07:00
Joe Koning
3052e003e0
py-sqlalchemy: add version 1.3.19 (#19062) 2020-10-02 13:36:15 -07:00
Joe Koning
640d5a9a63
py-pytz: add version 2020.1 (#19064) 2020-10-02 13:34:42 -07:00
Joe Koning
ac94bc9ed3
py-pycparser: add version 2.20 (#19065) 2020-10-02 13:33:44 -07:00
Joe Koning
84791e1051
py-psutil: add version 5.7.2 (#19066) 2020-10-02 13:32:49 -07:00
Joe Koning
f067bdd522
py-prompt-toolkit: add version 3.0.7 (#19067) 2020-10-02 13:32:03 -07:00
Joe Koning
18165b6d88
py-parse: add version 1.18.0 (#19068) 2020-10-02 13:31:24 -07:00
Joe Koning
addedd9a82
py-maestrowf: add version 1.1.7dev0 (#19070) 2020-10-02 13:30:21 -07:00
Joe Koning
57d36426bd
py-kombu: add versions 4.6.11 and 5.0.2 (#19071) 2020-10-02 13:29:00 -07:00
Joe Koning
d4410e45d5
py-cffi: add version 1.14.3 (#19078) 2020-10-02 13:25:46 -07:00
Joe Koning
1ef7da295f
py-importlib-metadata: add version 2.0.0 (#19072) 2020-10-02 13:19:28 -07:00
Joe Koning
92853598e9
py-humanfriendly: add version 8.2 (#19073) 2020-10-02 13:18:49 -07:00
Joe Koning
898f9c8838
py-filelock: add version 3.0.12 (#19074) 2020-10-02 13:18:02 -07:00
Joe Koning
4482f20900
py-coloredlogs: add version 14.0 (#19075) 2020-10-02 13:17:04 -07:00
Joe Koning
bc17b78b47
New package: py-click-repl (#19076) 2020-10-02 13:16:24 -07:00
Joe Koning
d8dadd1435
New package py-click-didyoumean (#19077) 2020-10-02 13:15:21 -07:00
Joe Koning
2682c32d50
py-cached-property: add version 1.5.2 (#19080) 2020-10-02 12:17:06 -07:00
Joe Koning
0e30179d0a
py-billiard: add version 3.6.3.0 (#19081) 2020-10-02 12:16:12 -07:00
Joe Koning
861586ce86
py-amqp: add versions 5.0.1 and 2.6.1 (#19082) 2020-10-02 12:15:17 -07:00
Joe Koning
76218fab04
py-tabulate: add version 0.8.7 (#19083) 2020-10-02 12:14:01 -07:00
Joe Koning
4ac13cb322
py-vine: add version 5.0.0 (#19084) 2020-10-02 12:13:19 -07:00
Michael Kuhn
e47b725d8e
New package: libisal (#19098) 2020-10-02 12:12:18 -07:00
Jen Herting
c21a65b73a
New package: librmm (#19103) 2020-10-02 12:10:49 -07:00
Andreas Baumbach
145e3c7215
New package: Icarus (#19092) 
Co-authored-by: Philipp Spilger <philipp.spilger@kip.uni-heidelberg.de>
Co-authored-by: Eric Müller <mueller@kip.uni-heidelberg.de>
 2020-10-02 12:06:01 -07:00
Satish Balay
569eb866fc
Add hypre@2.20.0 petsc@3.14.0 [and 3.13.6,3.13.5] (#19105) 2020-10-02 12:02:23 -07:00