Commit graph

16429 commits

Author SHA1 Message Date
Greg Becker
acfa2ea018
remove hypre variant from mfem and all references to it (#17885) 2020-08-05 09:19:22 -07:00
darmac
afaae70855
nodejs: add version 8.11.4 (#17824)
* nodejs: add version 8.11.4

* node-js: refine configure() for different version
2020-08-05 10:12:14 -05:00
Ronak Buch
e64e600fbb
charmpp: added v6.10.2 (#17886) 2020-08-05 15:03:51 +02:00
Jen Herting
96f5075eb1
[py-smart-open] fixing dependencies (#17640)
* version 1.8.4 requires py-boto at 2.3.2:
* google-cloud-storage only in newer versions
2020-08-04 16:44:30 -07:00
Jen Herting
118948cb0a
[bowtie] added version 1.3.0. Patch fixed for new version (#17744) 2020-08-04 14:52:51 -07:00
Tim Haines
f9ee76a817
Dyninst: 10.2 release (#17847)
* Dyninst: 10.2 release

* Use 'elf' instead of 'elfutils'

* Use v10.2.0 tag

* Change minimum elfutils to 0.173

* Move STERILE_BUILD option to correct cmake_args

* make a sacrifice to the flake8 gods

* Add maintainer

* Revert to using elf@1 for elfutils
2020-08-04 13:48:08 -05:00
Brian Van Essen
54dc871524
Renamed the aluminum variant for thhe intra-node RMA functions. (#17861) 2020-08-04 12:52:59 -05:00
Ethan Stam
b3dd90b95c
ParaView: Allow all ParaView versions to depend on Python 2 (#17484)
* Allow all ParaView versions to depend on Python 2

* Keep conflict for 5.9 and up with python 2

* Fix line too long

* Don't use backslash

* Try fixing indent

* Clean logic for python cmake flags

* Try fixing indent
2020-08-04 12:51:49 -05:00
Toyohisa Kameyama
d77f388a0d
yorick: avoid hang to fputest on aarch64. (#17865) 2020-08-04 12:27:27 -05:00
Simon Frasch
cb676eab0f
Added new package: spla (#17868) 2020-08-04 12:24:07 -05:00
Robert Underwood
4eb3558d20
Prefer dynamic linking for Python in vim when +python (#17870)
Previously the python package for vim used static linking, and depending
on what system libraries were available and linked against could cause
symbol conflicts for python leading to segfaults in loading c modules in
the standard library (i.e. heapq).  This patch address this issue by
dynamically linking them.
2020-08-04 12:22:53 -05:00
Robert Underwood
b35b950ee2
Add openssh runtime dependency to git (#17872)
If you use git to clone a repository ssh, git transfers control the ssh
binary available on your path, if that ssh binary was built with
contradictory version of openssl/kerberos, then your git commands will
fail.
2020-08-04 12:21:55 -05:00
Adam J. Stewart
91671be7cc
py-keras-preprocessing: add new version (#17735) 2020-08-04 12:12:15 -05:00
t-nojiri
8977f7377a
abyss 2.1.4: fails to build with GCC 8 (#17614)
* abyss 2.1.4: fails to build with GCC 8

* abyss 2.1.4: fails to build with GCC 8

* abyss 2.1.4: Revise the points indicated by the review.
2020-08-04 12:11:52 -05:00
vvolkl
9d2b60ac0c
[delphes] pythia8 variant and cleanup (#17664)
* [delphes] new version

* [delphes] pythia8 variant

* [delphes] flake8
2020-08-04 12:11:13 -05:00
Zicklag
b85cc363c1
Add Espanso Package and its xdotool Dependency (#17586) 2020-08-04 12:06:46 -05:00
Simon Pintarelli
c3a38e0b14
sirius (new versions, fixes), q-e-sirius (new package), nlcglib (new package) (#17844)
* sirius, update versions, fixes, add missing options

- sirius/spfft: depend on fftw-api
- cleanup +shared option
- sirius add option for memory pool
- sirius add version 6.5.3 and 6.5.4
- sirius: add spfft dependency for @master, @develop

* add nlcglib package

Robust wave function optimization for SIRIUS.

* add q-e-sirius package

based on q-e package

* Update var/spack/repos/builtin/packages/q-e-sirius/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* nlcglib: pass nvcc_wrapper to cmake

* Add 6.5.6

* Make flake8 happy

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-04 12:03:04 -05:00
Mark W. Krentel
3a02d1a847
hpctoolkit: add v2020.08.03 (#17860)
Add version 2020.08.03.  Adjust the cuda args.  The --with-cupti arg
was redundant, even for old versions of hpctoolkit.
2020-08-04 13:39:47 +02:00
Enrico Usai
bd0fb35ff0
AWS ParallelCluster: added v2.8.1 (#17866) 2020-08-04 13:25:27 +02:00
Brian Van Essen
c203898663
Added versions for cuDNN 8.0.2. (#17862) 2020-08-04 13:05:29 +02:00
t-nojiri
23f61ae2b0
subread: extend support for aarch64 to v2.0.0 (#17864) 2020-08-04 13:01:39 +02:00
g-mathias
9c8d4be569
new plumed versions 2.5.5 and 2.6.1; bumped default to 2.5.5 (#17850)
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-03 23:15:57 -05:00
albestro
7154351860
HPX: fix wrong method name and use define/define_from_variant methods (#17851)
* bug fix: wrong method name

* refactoring using define_from_variant and define

* flake8 style fix

* revert change string format
2020-08-03 23:15:23 -05:00
Harmen Stoppels
9318029b63
Bump cmake (#17852) 2020-08-03 23:12:07 -05:00
Harmen Stoppels
c07102ac9f
Fix typo: yaml -> json (#17854) 2020-08-03 23:11:41 -05:00
mic84
1c4b6bad43
amrex:: new version 20.08 (#17856) 2020-08-03 23:08:42 -05:00
darmac
8e1e3ac8c3
canu: fix depends issue & using java instead of jdk (#17599)
* canu: fix depends issue & using java instead of jdk

* Update var/spack/repos/builtin/packages/canu/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03 23:05:37 -05:00
darmac
a7f1565efb
Add new package: ycsb (#17788)
* Add new package: ycsb

* refine mongodb-async-driver jar path
2020-08-03 23:04:48 -05:00
darmac
1884822b56
Add new package: slider (#17799)
* Add new package: slider

* refine version check
2020-08-03 23:04:09 -05:00
darmac
0cc2377de6
Add new package: giraph (#17790)
* Add new package: giraph

* refine version check
2020-08-03 23:03:25 -05:00
Claire Guilbaud
ce7aefbb4f
Packages/py colorspacious (#17623)
* typo error correction

* Adding recipe for `colorspacious` (a python package)

* Copyright year changed

* revert last commit on basic_usage.rst

* better with a good description

* fix according to failed test

* Update var/spack/repos/builtin/packages/py-colorspacious/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-colorspacious/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03 23:01:03 -05:00
Massimiliano Culpo
b1133fab22 MacOS nightly builds: use Python 3.7 in CI
Nightly builds with MacOS started failing again
due to an upgrade of the default virtual environment
that now uses Python 3.8

This makes us hit #14102 and every build fails. This
commit should be reverted along with the fix to #14102.
2020-08-03 17:23:10 -07:00
Harmen Stoppels
827ca72c26
Fix docs about containers on cray (#17431)
* For detecting Cray: CRAYPE_VERSION is not used, but MODULEPATH

* Fix typo and write Cray with a capital
2020-08-03 16:16:18 -07:00
Adam J. Stewart
a67a0e3181
py-astropy: add version 4.0.1.post1, update header finding (#17838)
* Add install tests
* Add pkgconfig dependency to find dependency headers (specifically
  wcslib)
2020-08-03 11:51:29 -07:00
Adam J. Stewart
8b50433cd7
ERFA (package): add version 1.7.0 (#17837) 2020-08-03 11:40:50 -07:00
Paul
4c97a0ea1c
Added Go 1.14.6 and 1.13.14 (#17574) 2020-08-03 09:42:05 -05:00
ketsubouchi
a480507a92
python: RPATH on fj (#17783)
* python: RPATH on fj

* python: patch _is_gcc
2020-08-02 22:53:14 -05:00
Francesco Di Natale
ac433134e5
Updates to jsonschema to include newer versions. (#17613)
* Additional versions of py-jsonschema.

* Tweak to force Maestro to use jsonschema@3.2.0:

* Correction of whitespace (flake8 error).

* Merges importlib's Python  version conditons

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-02 19:42:56 -05:00
Harmen Stoppels
e199f3f245
Add new versions of spfft (#17841)
* Add new versions of spfft

* Extend CudaPackage and use virtual fftw package

Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>

* Add CUDA 11 compatibility note

* Depend on older cuda <= 10 for spfft <= 0.9.11

Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>
2020-08-02 19:42:07 -05:00
René Widera
d560d83b76
fix isaac-server dependency (#17569)
isaac-server can not find jansson if jansson2.10+ is used.
2020-08-02 19:41:18 -05:00
Jon Rood
041fcbfa59
Gnuplot also depends on libsm with +wx. (#17575) 2020-08-02 16:46:42 -05:00
darmac
53b7f381c7
krb5: fix url parse and update versions (#17581) 2020-08-02 16:46:04 -05:00
darmac
044b9d3e85
mariadb: add depends package krb5 (#17583) 2020-08-02 16:45:05 -05:00
Harsh Bhatia
b25055c7e8
new package: ibm databroker (#17591) 2020-08-02 16:40:44 -05:00
Patrick Gartung
33116d730d
Buildcache create: change NoOverwriteException back to a warning as in v0.14 (#17832)
* Change buildcache create `NoOverwriteException` back to a warning.
2020-08-02 13:52:15 -07:00
Patrick Gartung
f29dd48101 Add bindist tests for macOS. 2020-08-02 13:51:14 -07:00
albestro
ef3338a49b
Improve HPX package management of coroutines implementation (#17654)
* introduce logic for boost+context dependency and generic_context variant

* fix OTF2 instrumentation minor problem

* default coroutine impl depends on platform

* fix flake8

* add reference to ~generic_coroutines conflict info

* Update var/spack/repos/builtin/packages/hpx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-02 09:56:50 -05:00
Rémi Lacroix
8e6fe883eb
Octopus: Add support for version 10.0. (#17782)
* Octopus: Add support for version 10.0.

Fix compilation when using the MKL as a provider for BLAS/LAPACK. Octopus will now detect that the MKL also provides the FFTW API and will refuse to compile when both the FFTW library and the MKL are given to the configure script.

* Octopus: Add supported version range for libxc.
2020-08-02 09:55:08 -05:00
Todd Gamblin
b94a837760
berkeley-db: add version 18.1.40, update build options in package (#17839)
* berkeley-db: add version 18.1.40, update build options in package

* combine adamjstewart's changes

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01 19:33:35 -05:00
Wouter Deconinck
7e6a77d907
New package: kassiopeia (#17742)
* [kassiopeia] New package

* [kassiopeia] Remove master branch, update dependencies

* Update var/spack/repos/builtin/packages/kassiopeia/package.py

Unable to test since I do not have a license to intel-parallel-studio, but I see no reason why it would not work if.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [kassiopeia] depends_on mpi

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [kassiopeia] cmake_args with self.spec.satisfies and elses

* [kassiopeia] args.extend -> args.append

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01 17:40:21 -05:00