Commit graph

29097 commits

Author SHA1 Message Date
Mosè Giordano
57e9e77475
gmp: Add cxx variant, and require it in libint package (#34881) 2023-01-12 10:22:56 -08:00
Benjamin Meyers
d260fa59c9
New package: py-fastfold (#34354)
* New package: py-fastfold

* Fix dependencies for py-fastfold

* [py-fastfold] fix types

* [py-fastfold] relax strict versions

* Fix spack style manually

* [py-fastfold] relax python and py-requests upper bounds

* [py-fastfold] remove bad/unecessary depends_on
2023-01-12 12:20:49 -06:00
Wouter Deconinck
0da69a45e3
edm4hep: depends_on nlohmann-json (#34888)
We may pick this up transitively through `root`, but it makes sense to be explicit too.
2023-01-12 09:38:18 -08:00
eugeneswalker
153b79c2ed
loki%oneapi@2023.0.0: -Wno-error=dynamic-exception-spec (#34899) 2023-01-12 09:06:38 -08:00
Harmen Stoppels
ffae0db115
Add dummy perl+open variant, use it in external find, require it in libxcrypt (#34867) 2023-01-12 16:41:31 +01:00
Benjamin S. Kirk
37c8ebcafd
updating checksummed versions for podman (#34788)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-01-12 06:42:27 -08:00
snehring
03fc502da5
r-ncdf4: adding new version 1.21 (#34890) 2023-01-11 16:47:44 -08:00
Wouter Deconinck
b73884d541
gaudi: new versions 36.8, 36.9 (#34822)
* gaudi: new versions 36.8, 36.9
  As of 36.8, the tests use catch2 ([commit](https://gitlab.cern.ch/gaudi/Gaudi/-  /commit/f2cafb5c9d04c9d497d49182258aa3a0440622c0)).
* gaudi: still depends_on fmt@:8
2023-01-11 13:05:00 -08:00
Sam Reeve
43f337d993
Add version 1.1 for ExaCA (#34833) 2023-01-11 12:47:15 -08:00
Christopher Christofi
a8188a9f14
perl-pathtools: add 3.75 (#34787) 2023-01-11 11:51:05 -08:00
Cameron Stanavige
c19638bb0d
unifyfs: new release v1.0.1 (#34876)
* unifyfs: new release v1.0.1
  Add 1.0.1 release
  Add new variant for new configure time option

Co-authored-by: CamStan <CamStan@users.noreply.github.com>
2023-01-11 11:33:04 -08:00
Massimiliano Culpo
ccb9969b64
Fix issue when generating compiler hierarchy (#34873)
- [x] Fix bug affecting generation of Lmod modules
2023-01-11 10:09:02 -08:00
Manuela Kuhn
fa93b5219c
py-virtualenv: add 20.17.1 (#34859) 2023-01-11 10:08:02 -08:00
Christopher Christofi
42a0cf9b96
py-fasteners: add 0.15 (#34865) 2023-01-11 11:50:00 -06:00
Sreenivasa Murthy Kolam
4b67153613
Update ROCm recipes for 5.3.3 release. (#34862)
* initial commit for 5.3.3 release
* update rocm-openmp-extras for rocm-5.3.3 release
* address review comments and failures
2023-01-11 09:47:27 -08:00
vucoda
c65c944853
Update py-libconf package to newer major version (#34836) 2023-01-11 09:43:06 -08:00
Mike VanDenburgh
ea6608edde
Bump memory requests for e4s/ml generate jobs (#34648) 2023-01-11 10:41:42 -07:00
Harmen Stoppels
07499f2355
fix: python tix detection blocks reuse (#34768)
Now that the `tix` variant is conditional, it should also be detected
condititionally, otherwise the spec is invalid and cannot be used during
concretization.
2023-01-11 10:04:20 -07:00
Wileam Y. Phan
781c4823e6
Add fpm 0.7.0 (#34871) 2023-01-11 07:32:39 -08:00
QuellynSnead
71a609b2f4
trilinos: Limit application of "-fuse-ld=gold" for %cce builds (#34875) 2023-01-11 05:47:35 -08:00
Alex Hedges
74595de359
shellcheck: add comments about installing binary (#34877)
ShellCheck is installed with a downloaded binary instead of being
compiled from source, and there should be comments to point out this
unorthodox approach.
2023-01-11 01:17:25 -08:00
eugeneswalker
9d70f6e6c7
protected runner jobs at uo: trust e4s-uo signing key (#34828) 2023-01-10 18:18:38 -07:00
John W. Parent
7365d138fb
Build systems: add MSBuild and update NMake (#34659)
Add/update build systems used to build packages on Windows.
2023-01-10 17:03:15 -08:00
Glenn Johnson
b94030cc5d
plink: add new version (#34741)
The distribution of this has jumped around a bit. I left the previous
versions as-is.
2023-01-10 16:55:45 -08:00
Harmen Stoppels
4414161787
numactl: remove bash from numactl (#34798)
It doesn't require bash on any registered version, and the file is executable and has a /bin/sh shebang.
2023-01-10 16:22:52 -08:00
Erik Schnetter
881a0d4462
runc: New version 1.1.4 (#34815) 2023-01-10 16:07:56 -08:00
Alex Hedges
8d83af732a
shellcheck: add new package (#34831) 2023-01-10 15:31:20 -08:00
Benjamin S. Kirk
a5a2918202
autoconf: fix for long perl shebangs with autoconf@2.70+ (#34331)
autoconf 2.70 uses use warnings instead of -w so that PERL=/usr/bin/env perl can be passed, but we want to fix absolute paths anyhow through sbang upon install. So, we stick to patching the one perl script that's used during the build.
2023-01-10 14:27:29 -08:00
David Zmick
8dc3a09104
ruby-gist: add new package (#34852) 2023-01-10 14:14:49 -08:00
Scott Wittenburg
8f6f77ac9f
gitlab ci: fix tags for pipeline generation jobs (#34789)
Gitlab does not merge lists when a job extends two other definitions
that include the same list (e.g. tags).  Also, it merges dictionaries
as long as the keys are distinct, but just takes the last mentioned
value when there are key collisions.

This change makes sure that when different tags are needed by a
pipeline, the ones we want are actually provided.  It also changes
the example stack to better follow this pattern so we do not lead
developers astray in the future.
2023-01-10 10:06:26 -07:00
Wouter Deconinck
d0bd8f74cf
root: conflicts +ipo (#34842)
ROOT does not build successfully with `+ipo`, with symptoms as in https://github.com/root-project/root/issues/10777, and discussed most recently in https://github.com/root-project/root/issues/11135. As indicated there, LTO is not a supported build configuration. As of 6.26.10 there is no estimate for a fix since upstream is still broken.
2023-01-10 17:09:10 +01:00
Massimiliano Culpo
9d00e7d15d
Remove **kwargs from function signatures in llnl.util.filesystem (#34804)
Since we dropped support for Python 2.7, we can embrace using keyword only arguments 
for many functions in Spack that use **kwargs in the function signature. Here this is done 
for the llnl.util.filesystem module.

There were a couple of bugs lurking in the code related to typo-like errors when retrieving
from kwargs. Those have been fixed as well.
2023-01-10 14:23:42 +01:00
Alex Richert
cc333b600c
Add variants for overriding ESMF_OS and ESMF_COMM for ESMF package (#34808)
* Add variants for overriding ESMF_OS and ESMF_COMM for ESMF package

* Add doco for esmf_os/esmf_comm variants
2023-01-10 14:04:16 +01:00
Pranav Sivaraman
006969a8cd
xsbench: update version and add cuda support (#34597)
* Update xsbench to version 20

XSBench version 20 has implementations for new
architectures and accelerators.

* Added CUDA support for XSBench

* Fixed style issues
2023-01-10 13:59:30 +01:00
Axel Huebl
d2618cd640
WarpX 23.01 (#34793)
Update `warpx` & `py-warpx` to the latest release.
2023-01-10 04:47:25 -08:00
Jonathon Anderson
807b87068a
style: Run mypy last (#34687) 2023-01-10 04:37:41 -08:00
Jonathon Anderson
6879c35d1c
FileCache: Delete the new cache file on exception (#34623)
The code in FileCache for write_transaction attempts to delete the temporary file when an exception occurs under the context by calling shutil.rmtree. However, rmtree only operates on directories while the rest of FileCache uses normal files. This causes an empty file to be written to the cache key when unneeded.

Use os.remove instead which operates on normal files.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-01-10 13:36:12 +01:00
Alberto Invernizzi
f1b8bc97f0
neovim: version 0.8.2 (#34777)
* add version 0.8.2

* conflict for newer libvterm versions for older neovim releases

Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-01-10 13:29:43 +01:00
Wouter Deconinck
6fefb92413
cernlib: depends_on freetype, libnsl, libxcrypt, openssl; and patch (#34702)
* cernlib: depends_on freetype, libnsl, libxcrypt, openssl; and patch

In addition to #34448, cernlib depends on these additional packages.
This also applies a patch to the current release in which crypto is
specified wbere libcrypt (in libxcrypt) is actually needed. Because
the upstream git repository is behind a CERN login, we cannot patch
by gitlab URL link.

* [@spackbot] updating style on behalf of wdconinc

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-01-10 13:25:57 +01:00
Bryce Allen
03a2feef88
pfunit: fix max_array_rank for 4+, line len (#34713)
* pfunit: fix max_array_rank for 4+, line len

* pfunit: only use fortran flags when necessary

* pfunit: fix, version ranges are inclusive
2023-01-10 13:24:02 +01:00
Wouter Deconinck
416615f30b
spdlog: new version 1.11.0 depends_on fmt@9: when +fmt_external (#34731)
This adds a new version of spdlog,
https://github.com/gabime/spdlog/releases/tag/v1.11.0

While the release notes are ambiguous, I think that this PR,
https://github.com/gabime/spdlog/issues/2485, indicates that
spdlog from that point on uses features of fmt@9:.
2023-01-10 13:20:32 +01:00
Adam J. Stewart
b62c4276c9
py-pydocstyle: add v6.2 (#34785) 2023-01-10 13:17:00 +01:00
Carson Woods
b9861f7bbb
Add new versions of Reframe (#34801) 2023-01-10 13:09:18 +01:00
Erik Schnetter
856fe5941a
libcap: 2.66 & GOLANG=no (#34813)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-01-10 13:02:32 +01:00
Wileam Y. Phan
0f7f600d1f
Add CUDA 12.0 (#34664) 2023-01-10 11:51:23 +01:00
eugeneswalker
9283a94ee4
e4s ci: use 2023-01-01 runner image (#34827) 2023-01-10 10:47:28 +00:00
Adam J. Stewart
726dee9e2d
py-scipy: add v1.10.0 (#34799)
* py-scipy: add v1.10.0

* Update GCC/LAPACK version requirements

* Fix msvc version check
2023-01-10 11:43:55 +01:00
Stephen Sachs
b5a5af8c05
[adios2] Older versions of ifx (oneapi) fail compilation (#34819)
See https://community.intel.com/t5/Intel-Fortran-Compiler/version-node-not-found-for-symbol/m-p/1443784/thread-id/164290

Fixes https://github.com/spack/spack/issues/31817

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2023-01-10 11:39:42 +01:00
Sebastian Ehlert
289d6df911
Update mongo-cxx-driver (#34843) 2023-01-10 11:38:23 +01:00
dependabot[bot]
6158e4d8aa
build(deps): bump actions/upload-artifact from 3.1.1 to 3.1.2 (#34848)
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3.1.1 to 3.1.2.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](83fd05a356...0b7f8abb15)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-01-10 11:23:13 +01:00