Annop Wongwathanarat
5593611b5e
armpl: add new package ( #30305 )
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Co-authored-by: Annop Wongwathanarat <annop.wongwathanarat@arm.com>
2022-04-27 15:25:47 -07:00
dlkuehn
f544b051c4
orthofinder: add version 2.5.4 ( #30344 )
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Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-27 22:23:34 +00:00
Luc Berger
c534e70950
Kokkos: update package for release 3.6.00 ( #30315 )
2022-04-27 13:52:15 -07:00
Paul Ferrell
9ffb3b4ac0
mvapich2 MPI_ROOT needed in modules ( #30335 )
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We've found that when using mvapich2 via modules, we need to set the MPI_ROOT
environment variable.
2022-04-27 13:41:06 -07:00
kwryankrattiger
893c5271ac
Update ascent and deps for 0.8.x ( #29954 )
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* Update package versions for Ascent/SDK
* Umpire build static for cuda from dray
* Propagate cuda_arch for ascent and dray packages.
* Ascent: Update dependency versions for ascent@0.8:
* VTK-h: Patch +shared+cuda for VTK-h 0.8.x
* Ascent: Patch to allow @0.8: +shared+cuda
* Turn off building ascent tests.
* Update ascent patch
* WIP: Ascent: Update patch to configure MPI build with CUDA
* Ascent: Tests require vtk-m+testlib
* WIP: Ascent: Constrain 0.7 for vtk-h
* Ascent: Directly depend on VTK-m
2022-04-27 13:39:18 -06:00
eugeneswalker
f7a9456553
e4s ci: uncomment umpire ( #29776 )
2022-04-27 18:22:46 +00:00
kwryankrattiger
8250235207
Mesa: Constrain compatible LLVM version ( #30102 )
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Base on release date, not actual compatibility, because LLVM
version compatibility is not documented clearly in Mesa for
upper version limits.
2022-04-27 12:03:02 -06:00
Lucas Frérot
eb51591b02
SCons: added versions 4.0.0-4.3.0 ( #30296 )
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* SCons: added versions 4.0.0-4.3.0
* scons: correct package name casing in url_for_version
2022-04-27 11:08:30 -05:00
Brian Van Essen
06e7249850
Allow PyTorch to forward gcc-toolchain cxxcflag to CUDA toolchains ( #30318 )
2022-04-27 10:48:06 -05:00
Martin Diehl
c4ad003af2
damask-*: add v3.0.0alpha6 ( #30124 )
2022-04-27 16:01:36 +02:00
dependabot[bot]
1243717012
build(deps): bump actions/checkout from 2 to 3.0.2 ( #30235 )
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Bumps [actions/checkout](https://github.com/actions/checkout ) from 2 to 3.0.2.
- [Release notes](https://github.com/actions/checkout/releases )
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md )
- [Commits](https://github.com/actions/checkout/compare/v2...2541b1294d2704b0964813337f33b291d3f8596b )
---
updated-dependencies:
- dependency-name: actions/checkout
dependency-type: direct:production
update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-04-27 13:47:50 +02:00
snehring
da3d315cba
blat: add v37 ( #30166 )
2022-04-27 12:26:57 +02:00
Michael Kuhn
48ff4c7679
rust: add 1.60.0 and fix libgit2 incompatibility ( #30123 )
2022-04-27 12:22:52 +02:00
liuyangzhuan
9fc6494a28
Added GPTune v3.0.0 and its dependency py-pymoo ( #30119 )
2022-04-27 12:21:44 +02:00
Valentin Volkl
9d4cedac51
tauola: fix ~lhapdf ( #30190 )
2022-04-27 12:16:08 +02:00
Derek Ryan Strong
f66139dfe4
Add fix for binutils 2.38 +gas makeinfo issue ( #30209 )
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27 12:11:48 +02:00
nfurmento
79e0a3dad0
Starpu and Fxt: new packages ( #29285 )
2022-04-27 12:10:09 +02:00
dependabot[bot]
3dbbf3a101
build(deps): bump codecov/codecov-action from 3.0.0 to 3.1.0 ( #30234 )
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Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action ) from 3.0.0 to 3.1.0.
- [Release notes](https://github.com/codecov/codecov-action/releases )
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md )
- [Commits](e3c560433a...81cd2dc814
2022-04-27 11:26:19 +02:00
Harmen Stoppels
f273e7d329
openmpi: add toggle for rsh plm ( #30251 )
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By default `openmpi` needs `rsh` from `openssh`, which is a somewhat
redundant dependency for clusters using slurm. This PR adds a toggle to
allow users to disable the ssh/rsh plm altogether.
2022-04-27 11:15:48 +02:00
snehring
351072cd9f
gcta: rework package recipe ( #30286 )
2022-04-27 08:56:31 +00:00
Adam J. Stewart
0b23f1be05
py-pil: deprecate package ( #30308 )
2022-04-27 02:34:29 -06:00
Glenn Johnson
b8015a71e9
relion: add altcpu variant and fix fftw ( #30097 )
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This package was not setting FFTW when +mklfft was used with +cuda.
Since both were set to 'True', the default build was not linked to
any FFTW, leading to a run time error. It seems MKL support was
conflated with alternative CPU acceleration support. This PR does the
following:
- adds the altcpu variant to specify non-GPU/CPU acceleration
- sets a conflict between +altcpu and +cuda
- sets an FFTW implementation
- sets fltk+xft when +gui to get a decent looking GUI interface
- sets tbb dependency only when +altcpu
- adds dependency on ctffind
- adds variant and dependency on motioncor2
- sets defaults for
- qsub template location
- ctffind location
- motioncor2 location
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27 10:30:39 +02:00
snehring
739f040fa8
bucky: fix compile errors with newer gccs ( #30314 )
2022-04-27 02:11:02 -06:00
Massimiliano Culpo
d5fc859f46
ASP-based solver: handle installed specs from unknown namespaces ( #30092 )
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fixes #28259
This commit discard specs from unknown namespaces from the
ones that can be "reused" during concretization. Previously
Spack would just error out when encountering them.
2022-04-27 02:10:46 -06:00
Erik Schnetter
753f4a4bc3
reprimand: update requests on boost ( #30109 )
2022-04-27 09:46:22 +02:00
Lhxone
8c280d98ca
suntans: add new package ( #30149 )
2022-04-27 09:35:40 +02:00
eugeneswalker
d5e1fa5771
py-cryptography@35: tell cargo to use cli git, not cargo internal git… ( #30307 )
2022-04-26 20:58:28 -06:00
Michael Kuhn
f30b79b2c5
libgit2: add 1.4.3 and 1.3.1 ( #30122 )
2022-04-26 20:54:30 -06:00
Erik Schnetter
54146d44f9
fossil: New package ( #30311 )
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* fossil: new package
* fossil: Format code
2022-04-27 00:47:24 +00:00
Tamara Dahlgren
0c31ab87c9
Feature: Allow re-use of run_test() in install_time_test_callbacks ( #26594 )
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Allow re-use of run_test() in install_time_test_callbacks
Co-authored-by: Greg Becker <becker33@llnl.gov>
2022-04-26 17:40:05 -07:00
Lhxone
e49cccb0d9
New package: CaNS ( #30218 )
2022-04-27 00:33:36 +00:00
haralmha
7a1841c464
hadoop: Update url and add version 3.3.2 ( #29812 )
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* hadoop: Update url and add version 3.3.2
* Update url
2022-04-26 17:26:28 -07:00
haralmha
40ebeb2dc8
arrow: Add version 7.0.0 ( #29962 )
2022-04-26 16:57:56 -07:00
Lhxone
e5444b9a77
New package: Swan ( #30217 )
2022-04-26 16:32:19 -07:00
haralmha
89cc16a9cd
gnuplot: Add version 5.4.3 and add workaround for not found DSO ( #30163 )
2022-04-26 16:03:36 -07:00
Ken Raffenetti
a24070d532
docs: Fix ROCmPackage example syntax ( #30168 )
2022-04-26 16:00:40 -07:00
Kyle Gerheiser
f473fd8084
Add g2tmpl versions 1.10.2 and 1.10.1 ( #30202 )
2022-04-26 15:56:06 -07:00
John Hodrien
5055f5e3e2
Power9 build fix for ctffind4 ( #30300 )
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Only tested against the latest version, which is why it only applies the patch
when using 4.1.14.
Fix comes from:
https://grigoriefflab.umassmed.edu/forum/software/ctffind_ctftilt/installing_ctffind_4114_ibm_power9
2022-04-26 17:13:37 -05:00
Joel Falcou
0b26103c07
EVE now use main instead of develop as main branch ( #30220 )
2022-04-26 15:34:45 -06:00
Greg Becker
f99614be02
old concretizer: update deprecation warning ( #30227 )
2022-04-26 14:17:17 -07:00
Mark W. Krentel
c02e83092e
intel-xed: add version 2022.04.17 ( #30239 )
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1. Add version 2022.04.17 (new numbering scheme) and update mbuild resource.
2. Branch 'master' is now 'main'.
3. Old rev 10.2019.03 needs a patch for python vs python3.
2022-04-26 14:15:10 -07:00
Kyle Gerheiser
85e99fa154
Add NCIO v1.1.0 ( #30306 )
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See release notes https://github.com/NOAA-EMC/NCEPLIBS-ncio/releases/tag/v1.1.0
2022-04-26 21:03:26 +00:00
John W. Parent
83b91246b1
Windows: fix termination of process output redirection ( #29923 )
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The parent thread in the process stdout redirection logic on Windows
was closing a file that was being read in child thread, which lead to
error-based termination of the reader thread. This updates the
interaction to avoid the error.
2022-04-26 12:56:13 -07:00
Andrea Valenzuela
0f4b228eff
Add checksum for py-ipywidgets@7.7.0 ( #30155 )
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* Add checksum for py-ipywidgets@7.7.0
* Correct py-widgetsnbextension and py-ipython dependencies
* Update widgetsnbextension dependency to 3.6
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Allow requirement to next versions
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Revert ipyhton dependencies
* Add widgetsnbextension@3.6.0 checksum
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-04-26 14:48:53 -05:00
Lucas Frérot
2abbad1ca5
thrust: added version 1.12.1-1.16.0 ( #30292 )
2022-04-26 11:27:25 -07:00
Lucas Frérot
43d8fe212f
py-uvw: updated versions ( #30297 )
2022-04-26 10:06:41 -07:00
Valentin Volkl
84befcdfe2
opendatadetector: add new package ( #30298 )
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* opendatadetector: add new package
* style
* opendatadetector: add hep tag
2022-04-26 09:25:41 -07:00
Tamara Dahlgren
def8fce250
ginkgo: fix stand-alone test directory / install_test ( #28412 )
2022-04-26 09:20:10 -07:00
lorddavidiii
3a0aba0835
spack spec: add '--format' argument ( #27908 )
2022-04-26 09:08:56 -07:00
snehring
254cd624fe
exabayes: specify c++11 ( #30282 )
2022-04-26 17:22:27 +02:00
