Commit graph

32531 commits

Author SHA1 Message Date
John W. Parent
4dafae8d17
spack.bat: Fixup CL arg parsing (#39359)
Previous changes to this file stopped directly processing CL args to
stop batch `for` from interpolating batch reserved characters needed in
arguments like URLS. In doing so, we relied on `for` for an easy
"split" operation, however this incorrectly splits paths with spaces in
certain cases. Processing everything ourselves with manual looping via
`goto` statements allows for full control over CL parsing and handling
of both paths with spaces and reserved characters.
2023-08-18 14:29:47 -07:00
Jen Herting
b2b00df5cc
[py-gradio-client] New package (#39496) 2023-08-18 12:03:37 -05:00
Jen Herting
114e5d4767
[py-openmim] Beginning work (#39494) 2023-08-18 12:00:48 -05:00
Jen Herting
fd70e7fb31
[py-confection] new package (#39491) 2023-08-18 11:59:47 -05:00
George Young
77760c8ea4
py-multiqc: add 1.15, correct py-matplotlib dependency (#39509)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-08-18 11:56:20 -05:00
Jen Herting
737a6dcc73
py-markdown-it-py: add linkify variant and v2.2.0 (#39492)
* [py-markdown-it-py] added linkify variant

* [py-markdown-it-py] added version 2.2.0
2023-08-18 11:14:15 -05:00
Seth R. Johnson
3826fe3765
fortrilinos: release 2.3.0 compatible with trilinos@14 (#39500)
* fortrilinos: release 2.3.0 compatible with trilinos@14.0
2023-08-18 12:10:00 -04:00
Benjamin Meyers
edb11941b2
New: py-alpaca-farm, py-alpaca-eval, py-tiktoken; Updated: py-accerlate, py-transformers (#39432) 2023-08-18 10:29:12 -05:00
Axel Huebl
1bd58a8026
WarpX 23.08 (#39407)
* WarpX 23.08

Update WarpX and related Python packages to the lastest releases.

* fix style

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-08-18 10:03:47 -05:00
Jordan Galby
f8e0c8caed
Fix Spack freeze on install child process unexpected exit (#39015)
* Fix spack frozen on child process defunct

* Rename parent/child pipe to read/write to emphasize non-duplex mode
2023-08-18 09:41:02 +02:00
Vijay M
d0412c1578
Updating the versions of available tarballs and adding an eigen3 variant as well (#39498) 2023-08-17 22:23:32 -04:00
Harmen Stoppels
ec500adb50
zlib-api: use zlib-ng +compat by default (#39358)
In the HPC package manager, we want the fastest `zlib`  implementation by default.  `zlib-ng` is up to 4x faster than stock `zlib`, and it can do things like take advantage of AVX-512 instructions.  This PR makes `zlib-ng` the default `zlib-api` provider (`zlib-api` was introduced earlier, in #37372).

As far as I can see, the only issues you can encounter are:

1. Build issues with packages that heavily rely on `zlib` internals. In Gitlab CI only one out of hundreds of packages had that issue (it extended zlib with deflate stuff, and used its own copy of zlib sources).
2. Packages that like to detect `zlib-ng` separately and rely on `zlib-ng` internals. The only issue I've found with this among the hundreds of packages built in CI is `perl` trying to report more specific zlib-ng version details, and relied on some internals that got refactored. But yeah... that warrants a patch / conflict and is nothing special.

At runtime, you cannot really have any issues, given that zlib and zlib-ng export the exact same symbols (and zlib-ng tests this in their CI).

You can't really have issues with externals when using zlib-ng either. The only type of issue is when system zlib is rather new, and not marked as external; if another external uses new symbols, and Spack builds an older zlib/zlib-ng, then the external might not find the new symbols. But this is a configuration issue, and it's not an issue caused by zlib-ng, as the same would happen with older Spack zlib.

* zlib-api: use zlib-ng +compat by default
* make a trivial change to zlib-ng to trigger a rebuild
* add `haampie` as maintainer
2023-08-17 14:03:14 -07:00
Harmen Stoppels
30f5c74614
py-flake8: bump including deps (#39426) 2023-08-17 21:02:11 +02:00
Massimiliano Culpo
713eb210ac
zig: add v0.11.0 (#39484) 2023-08-17 19:18:00 +02:00
Massimiliano Culpo
a022e45866
ASP-based solver: optimize key to intermediate dicts (#39471)
Computing str(spec) is faster than computing hash(spec), and
since all the abstract specs we deal with come from user configuration
they cannot cover DAG structures that are not captured by str() but
are captured by hash()
2023-08-17 14:11:49 +02:00
eugeneswalker
82685a68d9
boost %oneapi: add cxxflags -Wno-error=enum-constexpr-conversion (#39477) 2023-08-17 07:49:20 -04:00
dependabot[bot]
b19691d503
Bump mypy from 1.5.0 to 1.5.1 in /lib/spack/docs (#39478)
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1.
- [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-17 12:35:49 +02:00
eugeneswalker
54ea860b37
gmsh %oneapi: add cflag: -Wno-error=implicit-function-declaration (#39476) 2023-08-17 06:09:07 -04:00
eugeneswalker
fb598baa53
py-ruamel-yaml-clib %oneapi: -Wno-error=incompatible-function-pointer-types (#39480) 2023-08-17 11:59:45 +02:00
eugeneswalker
02763e967a
sz %oneapi: add cflag=-Wno-error=implicit-function-declaration (#39467) 2023-08-17 02:36:17 -07:00
Seth R. Johnson
2846be315b
kokkos: use 'when' instead of 'conflicts' for CUDA variants (#39463) 2023-08-17 05:12:52 -04:00
eugeneswalker
4818b75814
silo %oneapi: add cflags: -Wno-error=int, -Wno-error=int-conversion (#39475) 2023-08-17 04:42:58 -04:00
eugeneswalker
b613bf3855
py-matplotlib %oneapi: add cxxflags=-Wno-error=register (#39469) 2023-08-17 04:13:09 -04:00
Adam J. Stewart
3347372a7b
py-deepspeed: add new package (#39427) 2023-08-17 08:47:40 +02:00
Sergey Kosukhin
c417a77a19
snappy: patch and conflict for %nvhpc (#39063) 2023-08-17 08:44:38 +02:00
Martin Aumüller
90d0d0176c
botan: version 3 requires newer GCC (#39450)
e.g. 3.1.1 produces this during configuration when trying to install:
  ERROR: This version of Botan requires at least gcc 11.0
2023-08-17 08:34:43 +02:00
Adam J. Stewart
72b9f89504
py-setuptools: document Python 3.12 support (#39449) 2023-08-17 08:31:53 +02:00
Peter Scheibel
a89f1b1bf4
Add debugging statements to file search (#39121)
Co-authored-by: Scheibel <scheibel1@ml-9983616.the-lab.llnl.gov>
2023-08-17 08:31:06 +02:00
Adam J. Stewart
c6e26251a1
py-lightning: add v2.0.7 (#39468) 2023-08-17 08:19:50 +02:00
Harmen Stoppels
190a1bf523
Delay abstract hashes lookup (#39251)
Delay lookup for abstract hashes until concretization time, instead of
until Spec comparison. This has a few advantages:

1. `satisfies` / `intersects` etc don't always know where to resolve the
   abstract hash (in some cases it's wrong to look in the current env,
   db, buildcache, ...). Better to let the call site dictate it.
2. Allows search by abstract hash without triggering a database lookup,
   causing quadratic complexity issues (accidental nested loop during
   search)
3. Simplifies queries against the buildcache, they can now use Spec
   instances instead of strings.

The rules are straightforward:

1. a satisfies b when b's hash is prefix of a's hash
2. a intersects b when either a's or b's hash is a prefix of b's or a's
   hash respectively
2023-08-17 08:08:50 +02:00
eugeneswalker
e381e166ec
py-numcodecs %oneapi: add cflags -Wno-error=implicit-function-declaration (#39454) 2023-08-16 15:52:01 -05:00
eugeneswalker
2f145b2684
pruners-ninja cflags: -Wno-error=implicit-function-declaration (#39452) 2023-08-16 15:51:38 -05:00
eugeneswalker
4c7748e954
amrex+sycl: restructure constraint on %oneapi (#39451) 2023-08-16 11:49:32 -06:00
eugeneswalker
86485dea14
hdf5-vol-cache %oneapi: cflags: add -Wno-error=incompatible-function-pointer-types (#39453) 2023-08-16 09:56:09 -06:00
Todd Kordenbrock
00f8f5898a
faodel: update github URL organization to sandialabs (#39446) 2023-08-16 07:25:47 -07:00
Massimiliano Culpo
f41d7a89f3 Extract Package from PackageNode for error messages 2023-08-16 06:20:57 -07:00
Harmen Stoppels
4f07205c63
Avoid sort on singleton list during edge insertion (#39458)
The median length of this list of 1. For reasons I don't know, `.sort()`
still like to call the key function.

This saves ~9% of total database read time, and the number of calls
goes from 5305 -> 1715.
2023-08-16 14:33:03 +02:00
Massimiliano Culpo
08f9c7670e
Do not impose provider conditions, if the node is not a provider (#39456)
* Do not impose provider conditions, if the node is not a provider

fixes #39455

When a node can be a provider of a spec, but is not selected as
a provider, we should not be imposing provider conditions on the
virtual.

* Adjust the integrity constraint, by using the correct atom
2023-08-16 05:15:13 -07:00
Harmen Stoppels
b451791336
json: minify by default (#39457) 2023-08-16 11:26:40 +00:00
Massimiliano Culpo
47f176d635
Add new custom markers to unit tests (#33862)
* Add "only_clingo", "only_original" and "not_on_windows" markers

* Modify tests to use the "not_on_windows" marker

* Mark tests that run only with clingo

* Mark tests that run only with the original concretizer
2023-08-16 09:04:10 +02:00
Patrick Bridges
b6ae751657
Fixed HeFFTe package spec to not do the smoke test prior to 2.2.0 (#39435)
* Fixed HeFFTe package spec to not do the smoke test prior to 2.2.0, where it breaks
* Convert test return to 'raise SkipTest'

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-08-15 21:03:14 -04:00
Massimiliano Culpo
9bb5cffc73 Change semantic for providers
If a possible provider is not used to satisfy a vdep,
then it's not a provider of that vdep.
2023-08-15 15:54:37 -07:00
Massimiliano Culpo
135b44ca59 Change "effect_rules" for symmetry with trigger rules
This even though right now we don't have cases where
the effect is on another package.
2023-08-15 15:54:37 -07:00
Massimiliano Culpo
d3aca68e8f Rework conflicts so that "vendors" is not needed anymore 2023-08-15 15:54:37 -07:00
Massimiliano Culpo
fb83f8ef31 Add a description at the top of lp files 2023-08-15 15:54:37 -07:00
Massimiliano Culpo
f69c18a922 Remove commented out code in lp files 2023-08-15 15:54:37 -07:00
Massimiliano Culpo
b95a9d2e47 Reduce line length in lp file 2023-08-15 15:54:37 -07:00
Massimiliano Culpo
def4d19980 Demote warning to debug message 2023-08-15 15:54:37 -07:00
Massimiliano Culpo
1db91e0ccd Rename "main_node" -> "make_node" 2023-08-15 15:54:37 -07:00
Massimiliano Culpo
34ebe7f53c Rename ""*_node" -> "*_dupe" 2023-08-15 15:54:37 -07:00