Commit graph

11220 commits

Author SHA1 Message Date
Satish Balay
4731041f88
strumpack@3.1.1: add patch for Intel-19 build failure on cori (#11204)
Ref: https://github.com/spack/spack/issues/11202
2019-04-17 12:10:05 -05:00
Justin S
01ada1a3de astral: add 5.6.1 (#11195) 2019-04-17 09:32:50 -05:00
sknigh
e372464611 Add llvm 8.0.0 (#11197) 2019-04-17 09:31:42 -05:00
Michael Kuhn
ea2a85dbd3 lz4: Add 1.9.0 (#11207) 2019-04-17 09:30:23 -05:00
Michael Kuhn
3028f5674c zstd: Add 1.4.0 (#11208) 2019-04-17 09:29:52 -05:00
Peter Scheibel
ef8b5c73ce
don't record 'view: True' in environment config (#11182)
The default (implied) behavior for all environments, as of ea1de6b,
is that an environment will maintain a view in a location of its
choosing. ea1de6b explicitly recorded all three possible states of
maintaining a view:

 1. Maintain a view, and let the environment decide where to put it
    (default)
 2. Maintain a view, and let the user decide
 3. Don't maintain a view

This commit updates the config writer so that for case [1], nothing
will be written to the config.yaml. This will not change any existing
behavior, it just serves to keep the config more compact.
2019-04-16 19:08:10 -07:00
sknigh
308805cd54 Added rust 1.34.0 (#11200) 2019-04-16 18:32:11 -05:00
sknigh
a287ad6edd Added openmpi 3.1.4 (#11201)
* Added openmpi 3.1.4

* fix suffix comment
2019-04-16 18:31:54 -05:00
Matthias Mayr
e07cf4d661 New package: CLN library (#11167) 2019-04-16 16:03:51 -07:00
Frédéric Simonis
2ef7287a3b precice package: add versions and dependencies (#11176)
* Add versions 1.4.0, 1.3.0, and 1.2.0
* Add dependencies and update constraints (e.g. version 1.4.0 of
  precice requires a later version of boost)
* Add maintainers
2019-04-16 12:38:08 -07:00
paulanda
88cc895a70 setup-env.sh: fix zsh compatibility error (#11153)
Still look for BASH_SOURCE[0] first, but if it's not set,
_sp_source_file is initialized to an empty value addressing the
unset parameter error (line 217).
2019-04-16 12:33:02 -07:00
Nichols A. Romero
9a79a2345d QMCPACK package: Remove Spack MKL hack for older version (#11127)
A Spack hack for MKL usage was needed in QMCPACK prior to version 3.5
when non-Intel compilers were used. This Spack hack could have
undesirable side-effects and led to ugly code that was extra work to
maintain. For older versions of QMCPACK, we throw a conflict if you
want to use Intel MKL with the other compilers commonly found on x86.

Note that there is no impact to version of QMCPACK since 3.5.
2019-04-16 12:04:40 -07:00
Satish Balay
c25d162b3c
superlu-dist: fix issue with adding system blas/lapack - when MKL is explicitly specified (#11187)
Version 6 added dependency on LAPACK - so additional -DTPL_LAPACK_LIBRARIES option is required

Ref: https://github.com/xiaoyeli/superlu_dist/issues/36
Ref: https://github.com/spack/spack/issues/10173
2019-04-16 08:52:48 -05:00
Adam J. Stewart
dbfa928cdb Add unit tests for Cray compiler detection (#11191) 2019-04-16 10:01:42 +02:00
Greg Becker
5f74f22dc6 Bugfix: Install missing compilers for dependency packages (#11175)
Compilers are treated separately from other dependencies in Spack.
#10761 added the option to automatically install compilers when a
package specifies using a compiler that is not available in Spack.
However, this did not work correctly for dependency packages (it
would only build a compiler for the root of an install DAG). This
commit enables the building of compilers for dependency packages.
2019-04-15 17:41:15 -07:00
Jordan Ogas
a49de9eb09 add charliecloud 0.9.9 (#11190) 2019-04-15 17:59:10 -05:00
Matthias Diener
dd97cf9315 cmake: add version 3.14.2 (#11192) 2019-04-15 17:17:24 -05:00
Denis Davydov
06a17ef052 pixman: fix patch (#11173) 2019-04-15 14:49:02 +02:00
Denis Davydov
0341e19540 boost: add 1.70.0 (#11183) 2019-04-15 09:59:04 +02:00
Oliver Breitwieser
dadbd723a3 verilator: Fix FlexLexer.h not found (#11185)
Similar to #10956 flex needs to be a link-dependency for verilator in
order for FlexLexer.h to be found during install.
2019-04-15 09:56:07 +02:00
Satish Balay
5b5e00aaa9 petsc4py: add verson 3.11.0 (#11186)
Also added maintainers
2019-04-15 09:54:40 +02:00
Mark C. Miller
1ae7477d20 Update FASTMath metapackage (#11171)
* Limit to FASTMath-only packages
* Replace boxlib with amrex

As requested by @asalmgren
2019-04-12 16:54:19 -05:00
Satish Balay
832a1ddbaa
petsc: add fftw variant (#11178) 2019-04-12 09:46:23 -05:00
Satish Balay
1eab6e3c86
petsc: add version 3.11.1 (#11179) 2019-04-12 09:45:43 -05:00
Owen Solberg
227f9c9026 py-deeptools: adding release 3.2.1 sha256 sum (#11174) 2019-04-12 09:45:04 +02:00
Massimiliano Culpo
263d8a818a Updated Sphinx configuration (#11165) 2019-04-11 14:38:52 -07:00
Denis Davydov
177b7f111a intel: optionally take gcc executable from cflags (#11136) 2019-04-11 12:33:59 -07:00
Satish Balay
6b09781936
xsdk@develop: enable amrex@develop+sundials (#11169) 2019-04-11 12:16:23 -05:00
Cody Balos
0d0358733d amrex: add sundials variant (#11147) 2019-04-11 10:43:11 -05:00
brietzke
d0e281e201 libxsmm package: add variant to build generator executables (#11114) 2019-04-10 16:34:38 -07:00
clellsolomon
7ec12c59ab fzf package: change mirror and add vim plugin (#10920)
This commit edits the Makefile to use github.com mirrors rather than the
default mirrors of the dependency packages installed by GO.
2019-04-10 16:23:37 -07:00
Chuck Atkins
f1bdaa11d4 New Packages: ecp-io-sdk and ecp-viz-sdk (#11073) 2019-04-10 16:18:05 -07:00
Peter Scheibel
ea1de6b941 Maintain a view for an environment (#10017)
Environments are nowm by default, created with views.  When activated, if an environment includes a view, this view will be added to `PATH`, `CPATH`, and other shell variables to expose the Spack environment in the user's shell.

Example:

```
spack env create e1 #by default this will maintain a view in the directory Spack maintains for the env
spack env create e1 --with-view=/abs/path/to/anywhere
spack env create e1 --without-view
```

The `spack.yaml` manifest file now looks like this:

```
spack:
  specs:
  - python
  view: true #or false, or a string
```

These commands can be used to control the view configuration for the active environment, without hand-editing the `spack.yaml` file:

```
spack env view enable
spack env view envable /abs/path/to/anywhere
spack env view disable
```

Views are automatically updated when specs are installed to an environment. A view only maintains one copy of any package. An environment may refer to a package multiple times, in particular if it appears as a dependency. This PR establishes a prioritization for which environment specs are added to views: a spec has higher priority if it was concretized first. This does not necessarily exactly match the order in which specs were added, for example, given `X->Z` and `Y->Z'`:

```
spack env activate e1
spack add X
spack install Y # immediately concretizes and installs Y and Z'
spack install # concretizes X and Z
```

In this case `Z'` will be favored over `Z`. 

Specs in the environment must be concrete and installed to be added to the view, so there is another minor ordering effect: by default the view maintained for the environment ignores file conflicts between packages. If packages are not installed in order, and there are file conflicts, then the version chosen depends on the order.

Both ordering issues are avoided if `spack install`/`spack add` and `spack install <spec>` are not mixed.
2019-04-10 16:00:12 -07:00
Eric Martin
8f1ebfc73c py-requests: Add missing dependencies for versions 2.16.0 and up (#10996) 2019-04-10 15:38:28 -07:00
Mario Melara
a1db22ba1a Unload altd and darshan (#11162) 2019-04-10 13:19:41 -07:00
Peter Scheibel
c1f8fdd5df
Add documentation for chaining Spack instances (#11152)
Add documentation for the Spack chain feature added in #8772
2019-04-10 11:54:13 -07:00
Patrick Gartung
a5315f3878
Fix bug when system perl is used. (#11034)
* Fix bug when system perl is used.

If system perl is being used through packages.yaml there cannot be dependent modules.
The  setup_dependent_packages function should not do anything in that case.
2019-04-10 08:44:27 -05:00
Denis Davydov
1e9748a3c8 dealii: fix build with tbb from intel parallel studio (#11138) 2019-04-10 14:51:38 +02:00
Denis Davydov
b2611c8086 suite-sparse: fix tbb patching (#11155) 2019-04-10 09:21:54 +02:00
Michael Kuhn
1ac576923f libfabric: Add 1.7.1 (#11141) 2019-04-09 18:38:15 -05:00
Matthias Diener
687a7db73f wget: add version 1.20.3 (#11148) 2019-04-09 18:37:04 -05:00
George Hartzell
0256766ab9 Typo: Unkown -> Unknown (#11150) 2019-04-09 18:36:45 -05:00
Denis Davydov
1f1ea2c859 intel: consolidate libs() in the base class (#11143)
* intel: consolidate libs() in the base class

* white space

* flake8
2019-04-09 13:54:21 -07:00
Denis Davydov
82455a30d0 openmpi: add 4.0.1 (#11126)
* openmpi: add 4.0.1

* openmpi: enable-mpi1-compatibility for 4.0.1 and above

* remove preferred

* make 3.1.3 preferred
2019-04-09 21:41:14 +02:00
Satish Balay
a9bf3bdd6a
xsdk@develop: enable hypre shared (even on OSX) and superlu-dist variant (#11131) 2019-04-09 08:42:44 -05:00
Owen Solberg
c6a7d0db03 cdhit - add new release 4.8.1 checksum (#11130) 2019-04-09 10:33:07 +02:00
Satish Balay
6e78730a97 mumps: add version 5.1.2 (#11132)
Add patch for gfortran-8 runtime errors
2019-04-09 10:28:41 +02:00
Patrick Gartung
aac3799d2c
Unset SPACK_INCLUDE_DIRS so the compiler wrapper does not prepend any -I flags. The assumption is that cmake will set the correct include flags. (#11129) 2019-04-08 14:30:22 -05:00
Michael Kuhn
db98f16382 zfp: Add 0.5.4 (#11016) 2019-04-08 09:11:28 +02:00
thelfer
3b5d7bfa99 Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). (#11109) 2019-04-08 09:09:14 +02:00