Commit graph

23364 commits

Author SHA1 Message Date
Tamara Dahlgren
41d375f6a4
Stand-alone tests: disallow re-using an alias (#25881)
It can be frustrating to successfully run `spack test run --alias <name>` only to find you cannot get the results because you already use `<name>` in some previous stand-alone test execution.  This PR prevents that from happening.
2021-10-14 15:08:00 -07:00
Tamara Dahlgren
beb8a36792
Remove extra tag assignments (#26692) 2021-10-14 14:50:09 -07:00
Manuela Kuhn
28ebe2f495
py-datalad: add 0.15.2 (#26750) 2021-10-14 21:44:52 +00:00
Harmen Stoppels
4acda0839b
cp2k: use variant propagation trick for virtuals (#26737) 2021-10-14 23:11:22 +02:00
Massimiliano Culpo
eded8f48dc
ASP-based solver: add a rule for version uniqueness in virtual packages (#26740)
fixes #26718

A virtual package may or may not have a version, but it
never has more than one. Previously we were missing a rule
for that.
2021-10-14 23:06:41 +02:00
Christoph Junghans
d9d0ceb726
add py-pyh5md and update py-espressopp (#26746)
* add  py-pyh5md and update py-espressopp

* Update package.py
2021-10-14 19:17:02 +00:00
Bernhard Kaindl
6ca4d554cd
libfive: Add all variants, +qt needs qt@5.15.2:+opengl (#26629)
Refresh of deps to fix the build and add variants from CMakeLists.txt
2021-10-14 11:42:01 -07:00
Mosè Giordano
74c6b7d8c1
sombrero: add version 2021-08-16 (#26741) 2021-10-14 19:41:50 +02:00
Bernhard Kaindl
95030a97b6
vc: Enable the testsuite, excluding tests failing on Zen2 (#26699)
This fixes running the testsuite, it adds the package virtest for it.
2021-10-14 09:02:31 -07:00
Miroslav Stoyanov
b64a7fe1ff
switch to the smoke testing included in heffte (#26720) 2021-10-14 08:58:29 -07:00
iarspider
160371f879
alpgen: new package (#26713)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-14 16:58:09 +02:00
Thomas Madlener
49354140be
edm4hep: new version, fix tests (depends on catch2) (#26679) 2021-10-14 14:04:45 +00:00
Thomas Madlener
25704ae8e6
podio: new version and fix python unittest env (#26649) 2021-10-14 13:54:02 +00:00
Bernhard Kaindl
a61853816f
phist: Fix build of 1.9.6, fix build- and install-tests (#26727)
Primary fix:

Due to a typo in a version range, overlapping PR merges resulted
in a build failure of the latest version:
Don't attempt to remove a non-existing file for version 1.9.6.

Secondary fixes:

update_tpetra_gotypes.patch was mentioned twice, and the version
range has to exclude @1.4.2, to which it cannot be applied.

Add depend_on() py-pytest, py-numpy and pkgconfig with type='test'

@:1.9.0 fail with 'Rank mismatch with gfortran@10:, add a conflicts().

raise InstallError('~mpi not possible with kernel_lib=builtin!')
when applicable.

Fixes for spack install --test=root phist:

mpiexec -n12 puts a lot of stress on a pod and gets stuck in a loop
very often: Reduce the mpiexec procs and the number of threads.

Remove @run_after('build') @on_package_attributes(run_tests=True):
from 'def check()': fixes it from getting called twice

The build script of 'make test_install' for the installcheck expects
the examples to be copied to self.stage.path: Provide them.
2021-10-14 08:14:25 -04:00
AMD Toolchain Support
8c1399ff7c
LAMMPS: update recipe for %aocc (#26710)
* updating the recipe for betterment

* addressing the suggesions received from reviewers

* adding package helper macros

Co-authored-by: mohan002 <mohbabul@amd.com>
2021-10-14 12:03:15 +00:00
Eric Brugger
2bc97f62fd
Qt: Qt fixes for a Cray AMD system. (#26722)
* Qt fixes for a Cray AMD system.

* Update to latest changes.
2021-10-14 07:41:26 -04:00
Massimiliano Culpo
949094544e
Constrain abstract specs rather than concatenating strings in the "when" context manager (#26700)
Using the Spec.constrain method doesn't work since it might
trigger a repository lookup which could break our directives
and triggers a circular import error.

To fix that we introduce a function to merge abstract anonymous
specs, based only on package names, which does not perform any
lookup in the repository.
2021-10-14 12:33:10 +02:00
Bernhard Kaindl
2c3ea68dd1
openslide: Fix missing dependencies: gdk-pixbuf and perl-alien-libxml2 (#26620)
Add missing pkgconfig to openslide and its dep perl-alien-libxml2.

Fix shared-mime-info to be a runtime dependency of gdk-pixbuf,
Otherwise, configure cannot detect use gdk-pixbuf without error.
2021-10-13 19:07:27 -05:00
Bernhard Kaindl
99200f91b7
r-imager: add depends_on('r+X') and bump version (#26697) 2021-10-13 19:02:54 -05:00
Satish Balay
36bd69021d
dealii: @9.3.1 has build errors with boost@1.77.0 - so add dependency on boost@1.76.0 [or lower] (#26709) 2021-10-14 01:30:53 +02:00
Harmen Stoppels
fcac95b065
Don't run lsb_release on linux (#26707)
Running `lsb_release` on Linux takes about 50ms because it is written in
Python. We do not use the output, so this change makes use not call it.
2021-10-14 01:27:24 +02:00
Manuela Kuhn
0227fc3ddc
py-mne: add full variant (#26702) 2021-10-13 16:59:46 -05:00
Keita Iwabuchi
7c8c29a231
metall: add version 0.17 (#26694)
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-13 22:10:16 +02:00
Bernhard Kaindl
5782cb6083
magics: Add v4.9.3 to fix build with gcc@11, skip broken testcase (#26695)
To build with gcc-11, v4.9.3 is needed, conflict added for older revs.
2021-10-13 12:14:37 -07:00
Bernhard Kaindl
f4a132256a
qgis: fix build of LTS release with proj>7 (#26696)
Co-authored-by: Sinan <sbulutw@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-13 20:42:18 +02:00
David Beckingsale
2864212ae3
Add camp 0.3.0 and 0.2.3 (#26717) 2021-10-13 18:41:35 +00:00
Bernhard Kaindl
87663c6796
vapor: Fix the build and update: Use correct deps and find numpy incdir (#26630)
vapor needs proj@:7 and gives a list of tested dependency versions.
Make it find the numpy include path and add version 3.5.0 as well
2021-10-13 13:25:18 -04:00
Bernhard Kaindl
14a929a651
sfcgal: build fails with cgal@:4.6, works with cgal@4.7: (#26642)
Use depends_on('cgal@4.7: +core') to fix the build
2021-10-13 11:47:09 -05:00
Bernhard Kaindl
bcd1272253
wireshark: Fix install race and skip network capture tests (#26698)
The network capture tests can't pass when built as normal user.
2021-10-13 12:39:19 -04:00
Todd Kordenbrock
6125117b5d
SEACAS: add a Faodel variant (#26583)
* SEACAS: add a Faodel variant

* Use safer CMake and variant packages instead of directly adding parameters
Add a "+faodel ~mpi" dependency to balance "+faodel +mpi"
2021-10-13 12:39:11 -04:00
Satish Balay
37278c9fa0
superlu-dist add version 7.1.0 (#26708) 2021-10-13 11:34:43 -05:00
Patrick Gartung
047c95aa8d
buildcache: do one less tar file extraction
The buildcache is now extracted in a temporary folder within the current store,
moved to its final place and relocated. 

"spack clean -s" has been extended to also clean the temporary extraction directory.

Add hardlinks with absolute paths for libraries in the corge, garply and quux packages
to detect incorrect handling of hardlinks in tests.
2021-10-13 17:38:29 +02:00
haralmha
e6b76578d2
Add version 4.12.0 (#26532) 2021-10-13 14:07:48 +00:00
iarspider
81c272fcb7
photos-f: new package (Fortran version) (#26703) 2021-10-13 15:56:11 +02:00
Jose E. Roman
c47eb7217e
slepc: set up SLEPC_DIR for dependent packages (#26701) 2021-10-13 15:51:08 +02:00
Jen Herting
8ad608a756
py-convokit: new package (#26236)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-10-13 15:50:07 +02:00
Joseph Wang
252784ccf5
cppgsl: disable tests on gcc11 (#26593) 2021-10-13 09:36:45 -04:00
Bernhard Kaindl
b771c4ea01
phist: Fix build: ppc64_sse.patch only applies to 1.9.4 (#26704)
ppc64_sse.patch can only be applied to 1.9.4:
* Older releases don't have the patched file
* All newer releases carry the change of the patch already.
2021-10-13 09:20:50 -04:00
Francis Kloss
53461b7b04
salome-medcoupling: new package (with dependencies) (#25785)
Adds new packages for using MEDCoupling from SALOME platform
2021-10-13 13:50:37 +02:00
Joe Schoonover
4d58661d08
feq-parse: add version 1.1.0 and update maintainer (#26060) 2021-10-13 00:20:21 +00:00
Valentin Volkl
81d157b05e
garfieldpp: update dependencies, add variant (#25816) 2021-10-13 02:13:50 +02:00
Jen Herting
0f9080738f
[py-spacy] added version 2.3.7 (#25999) 2021-10-12 23:57:04 +00:00
Scott McMillan
b937aa205b
Fix Amber patch target specification (#26687)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-10-13 00:15:05 +02:00
Jose E. Roman
31b0fe21a2
py-slepc4py: add missing depends_on() (#26688) 2021-10-13 00:09:19 +02:00
Bernhard Kaindl
e7bfaeea52
libical: Add missing deps: pkgconfig, glib and libxml2 (#26618)
Libical needs pkgconfig, glib and libxml2 to build.
2021-10-12 23:22:49 +02:00
Harmen Stoppels
1ed695dca7
Improve error messages for bootstrap download failures (#26599) 2021-10-12 22:11:07 +02:00
Bernhard Kaindl
b6ad9848d2
babelflow, parallelmergetree: fix build with gcc11 (#26681)
gcc-11 does not include the <limits> and <algorithm> as side effect
of including other header, at least not as often as earlier gcc did.
2021-10-12 21:45:00 +02:00
Stephen Herbein
8d04c8d23c
flux-core, flux-sched: add 0.29.0, 0.18.0 and cleanup env vars (#26391)
Problem: Flux expects the `FLUX_PMI_LIBRARY_PATH` to point directly at
the `libpmi.so` installed by Flux.  When the env var is unset,
prepending to it results in this behavior.  In the rare case that the
env var is already set, then the spack `libpmi.so` gets prepended with a
`:`, which Flux then attempts to interpret as a single path.

Solution: don't prepend to the path, instead set the path to point to
the `libpmi.so` (which will be undone when Flux is unloaded).

* flux-core: remove deprecated environment variables

The earliest checksummed version in this package is 0.15.0. As of
0.12.0, wreck (and its associated paths) no longer exist in Flux. As of
0.13.0, the `FLUX_RCX_PATH` variables are no longer used. So clean up
these env vars from the `setup_run_environment`.
2021-10-12 21:39:43 +02:00
Adam J. Stewart
47554e1e2f
GMT: add conflict for GCC 11 (#26684) 2021-10-12 17:56:17 +00:00
Bernhard Kaindl
862ce517ce
gromacs: @2018:2020: add #include <limits> for newer %gcc builds (#26678)
gromacs@2018:2020.6 is fixed to build with gcc@11.2.0
by adding #include <limits> to a few header files.

Thanks to Maciej Wójcik <w8jcik@gmail.com> for testing versions.
2021-10-12 11:39:09 -06:00