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salome-medcoupling: new package (with dependencies) (#25785)

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Adds new packages for using MEDCoupling from SALOME platform
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Francis Kloss 2021-10-13 13:50:37 +02:00 committed by GitHub
parent 4d58661d08
commit 53461b7b04
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GPG key ID: 4AEE18F83AFDEB23
6 changed files with 310 additions and 0 deletions
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27
var/spack/repos/builtin/packages/salome-configuration/FindSalomeHDF5.patch Normal file
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--- a/FindSalomeHDF5.cmake 2020-02-14 09:27:51.918313640 +0100
+++ b/FindSalomeHDF5.cmake.patched 2020-02-14 09:28:38.658223715 +0100
@@ -69,15 +69,15 @@
SET(_suffix "-shared")
SET(HDF5_LIBRARIES "${_target_prefix}hdf5${_suffix}")
ENDIF()
- GET_PROPERTY(_lib_lst TARGET ${HDF5_LIBRARIES} PROPERTY IMPORTED_LINK_INTERFACE_LIBRARIES_NOCONFIG)
- FOREACH(s ${_lib_lst})
- STRING(FIND "${s}" "mpi." _res) # should cover WIN(?) and LINUX
- IF(_res GREATER -1)
- GET_FILENAME_COMPONENT(_tmp "${s}" PATH) # go up to levels
- GET_FILENAME_COMPONENT(MPI_ROOT_DIR_EXP "${_tmp}" PATH)
- BREAK()
- ENDIF()
- ENDFOREACH()
+# GET_PROPERTY(_lib_lst TARGET ${HDF5_LIBRARIES} PROPERTY IMPORTED_LINK_INTERFACE_LIBRARIES_NOCONFIG)
+# FOREACH(s ${_lib_lst})
+# STRING(FIND "${s}" "mpi." _res) # should cover WIN(?) and LINUX
+# IF(_res GREATER -1)
+# GET_FILENAME_COMPONENT(_tmp "${s}" PATH) # go up to levels
+# GET_FILENAME_COMPONENT(MPI_ROOT_DIR_EXP "${_tmp}" PATH)
+# BREAK()
+# ENDIF()
+# ENDFOREACH()
IF(NOT SalomeHDF5_FIND_QUIETLY)
MESSAGE(STATUS "HDF5 was compiled with MPI: ${MPI_ROOT_DIR_EXP}")
ENDIF()

11
var/spack/repos/builtin/packages/salome-configuration/SalomeMacros.patch Normal file
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--- a/SalomeMacros.cmake 2021-03-09 12:23:13.164874719 +0100
+++ b/SalomeMacros.cmake.patched 2021-03-09 15:09:40.906813952 +0100
@@ -19,4 +19,8 @@
# Author: A.Geay, V. Sandler, A. Bruneton
#
+IF(CMAKE_VERSION VERSION_GREATER_EQUAL 3.3)
+ CMAKE_POLICY(SET CMP0057 NEW)
+ENDIF()
+
#----------------------------------------------------------------------------

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var/spack/repos/builtin/packages/salome-configuration/package.py Normal file
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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
#
# Important feature: a set of salome-xxx packages must have all the same version
# - except salome-med that is also fixed but by another number version
from spack import *
class SalomeConfiguration(Package):
"""salome-configuration is a part of SALOME platform and define general
build tools for the platform."""
maintainers = ['franciskloss']
homepage = "https://www.salome-platform.org"
git = "https://git.salome-platform.org/gitpub/tools/configuration.git"
version('9.7.0', tag='V9_7_0')
version('9.6.0', tag='V9_6_0')
version('9.5.0', tag='V9_5_0')
version('9.4.0', tag='V9_4_0')
version('9.3.0', tag='V9_3_0')
patch('SalomeMacros.patch', working_dir='./cmake')
patch('FindSalomeHDF5.patch', working_dir='./cmake')
def setup_dependent_build_environment(self, env, dependent_spec):
env.set('CONFIGURATION_ROOT_DIR', self.prefix)
def install(self, spec, prefix):
install_tree('.', prefix)

10
var/spack/repos/builtin/packages/salome-med/MAJ_400_410_champs.patch Normal file
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--- a/MAJ_400_410_champs.c 2020-03-11 11:03:40.000000000 +0100
+++ b/MAJ_400_410_champs.c.patched 2021-07-13 16:51:23.622940398 +0200
@@ -27,7 +27,6 @@
#define USER_MODE MED_COMPACT_STMODE
-#include "_MEDfieldValueUpdateEntityList41.c"
med_err getFieldsOn40(med_idt fid,
const char * const nommaa,

84
var/spack/repos/builtin/packages/salome-med/package.py Normal file
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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
#
# Important feature: to interoperate goodly MED files, it is imperative to fix
# the HDF5 version for a salome-med version
from spack import *
class SalomeMed(CMakePackage):
"""salome-med is the MED file format that is the SALOME platform standard
file for meshes and fields and salome-med is based on HDF5 library."""
maintainers = ['franciskloss']
homepage = "https://docs.salome-platform.org/latest/dev/MEDCoupling/developer/med-file.html"
url = "ftp://ftp.cea.fr/pub/salome/prerequisites/med-4.1.0.tar.gz"
version('4.1.0', sha256='847db5d6fbc9ce6924cb4aea86362812c9a5ef6b9684377e4dd6879627651fce')
version('4.0.0', sha256='a474e90b5882ce69c5e9f66f6359c53b8b73eb448c5f631fa96e8cd2c14df004')
version('3.3.1', sha256='856e9c4bb75eb0cceac3d5a5c65b1ce52fb3c46b9182920e1c9f34ae69bd2d5f')
version('3.2.0', sha256='d52e9a1bdd10f31aa154c34a5799b48d4266dc6b4a5ee05a9ceda525f2c6c138')
variant('mpi', default=False, description='Enable MPI')
variant('static', default=False, description='Enable static library build')
variant('fortran', default=False, description='Enable Fortran')
depends_on('mpi', when='+mpi')
depends_on('hdf5@1.10.3+mpi', when='@4.1.0+mpi')
depends_on('hdf5@1.10.3~mpi', when='@4.1.0~mpi')
depends_on('hdf5@1.10.3+mpi', when='@4.0.0+mpi')
depends_on('hdf5@1.10.3~mpi', when='@4.0.0~mpi')
depends_on('hdf5@1.8.14+mpi', when='@3.3.1+mpi')
depends_on('hdf5@1.8.14~mpi', when='@3.3.1~mpi')
depends_on('hdf5@1.8.14+mpi', when='@3.2.0+mpi')
depends_on('hdf5@1.8.14~mpi', when='@3.2.0~mpi')
patch('MAJ_400_410_champs.patch', when='@4.1.0+static', working_dir='./tools/medimport/4.0.0')
def check(self):
with working_dir(self.build_directory):
make('test', parallel=False)
def setup_dependent_build_environment(self, env, dependent_spec):
env.set('HDF5_ROOT_DIR', self.spec['hdf5'].prefix)
def cmake_args(self):
spec = self.spec
options = []
if '+mpi' in spec:
options.extend([
'-DMEDFILE_USE_MPI=ON',
'-DMPI_ROOT_DIR=%s' % spec['mpi'].prefix])
else:
options.extend(['-DMEDFILE_USE_MPI=OFF'])
if '+static' in spec:
options.extend([
'-DMEDFILE_BUILD_SHARED_LIBS=OFF',
'-DMEDFILE_BUILD_STATIC_LIBS=ON'])
else:
options.extend([
'-DMEDFILE_BUILD_SHARED_LIBS=ON',
'-DMEDFILE_BUILD_STATIC_LIBS=OFF'])
if '+fortran' in spec:
options.extend(['-DCMAKE_Fortran_COMPILER=%s' % self.compiler.fc])
else:
options.extend(['-DCMAKE_Fortran_COMPILER='])
options.extend([
'-DMEDFILE_BUILD_PYTHON=OFF',
'-DMEDFILE_INSTALL_DOC=OFF',
'-DMEDFILE_BUILD_TESTS=%s' % self.run_tests,
'-DHDF5_ROOT_DIR=%s' % spec['hdf5'].prefix])
return options

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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
#
# Important feature: a version of salome-medcoupling depand on
# a specific version of salome-med package
from spack import *
class SalomeMedcoupling(CMakePackage):
"""salome-medcoupling is a part of SALOME platform to manipulate meshes and
fields in memory, and use salome-med format for files."""
maintainers = ['franciskloss']
homepage = "https://docs.salome-platform.org/latest/dev/MEDCoupling/developer/index.html"
git = "https://git.salome-platform.org/gitpub/tools/medcoupling.git"
version('9.7.0', tag='V9_7_0')
version('9.6.0', tag='V9_6_0')
version('9.5.0', tag='V9_5_0')
version('9.4.0', tag='V9_4_0')
version('9.3.0', tag='V9_3_0')
variant('static', default=False, description='Enable static library build')
variant('mpi', default=False, description='Enable MPI')
variant('in64', default=False, description='Enable 64 bits indexes')
variant('partitioner', default=False, description='Enable partitioner')
variant('metis', default=False, description='Enable Metis')
variant('scotch', default=False, description='Enable Scotch')
depends_on('libxml2@2.9.1:')
depends_on('libtirpc')
depends_on('cppunit')
depends_on('python@3.6.5:')
depends_on('py-scipy@0.19.1:', type=('build', 'run'))
depends_on('py-numpy@1.15.1:', type=('build', 'run'))
depends_on('boost+python+numpy@1.58.0:')
depends_on('swig@3.0.12:', type='build')
depends_on('metis@5.1.0:', when='+metis')
depends_on('scotch@6.0.4:', when='+scotch')
depends_on('mpi', when='+mpi')
depends_on('salome-configuration@9.7.0', when='@9.7.0')
depends_on('salome-med@4.1.0+mpi+static', when='@9.7.0+mpi+static')
depends_on('salome-med@4.1.0+mpi', when='@9.7.0+mpi')
depends_on('salome-med@4.1.0+static', when='@9.7.0~mpi+static')
depends_on('salome-med@4.1.0', when='@9.7.0~mpi')
depends_on('salome-configuration@9.6.0', when='@9.6.0')
depends_on('salome-med@4.1.0+mpi+static', when='@9.6.0+mpi+static')
depends_on('salome-med@4.1.0+mpi', when='@9.6.0+mpi')
depends_on('salome-med@4.1.0+static', when='@9.6.0~mpi+static')
depends_on('salome-med@4.1.0', when='@9.6.0~mpi')
depends_on('salome-configuration@9.5.0', when='@9.5.0')
depends_on('salome-med@4.1.0+mpi+static', when='@9.5.0+mpi+static')
depends_on('salome-med@4.1.0+mpi', when='@9.5.0+mpi')
depends_on('salome-med@4.1.0+static', when='@9.5.0~mpi+static')
depends_on('salome-med@4.1.0', when='@9.5.0~mpi')
depends_on('salome-configuration@9.4.0', when='@9.4.0')
depends_on('salome-med@4.0.0+mpi+static', when='@9.4.0+mpi+static')
depends_on('salome-med@4.0.0+mpi', when='@9.4.0+mpi')
depends_on('salome-med@4.0.0+static', when='@9.4.0~mpi+static')
depends_on('salome-med@4.0.0', when='@9.4.0~mpi')
depends_on('salome-configuration@9.3.0', when='@9.3.0')
depends_on('salome-med@4.0.0+mpi+static', when='@9.3.0+mpi+static')
depends_on('salome-med@4.0.0+mpi', when='@9.3.0+mpi')
depends_on('salome-med@4.0.0+static', when='@9.3.0~mpi+static')
depends_on('salome-med@4.0.0', when='@9.3.0~mpi')
def check(self):
pass
def setup_build_environment(self, env):
if '+metis' in self.spec:
env.set('METIS_ROOT_DIR', self.spec['metis'].prefix)
if '+scotch' in self.spec:
env.set('SCOTCH_ROOT_DIR', self.spec['scotch'].prefix)
def setup_run_environment(self, env):
env.prepend_path(
'PYTHONPATH',
join_path(
self.prefix.lib,
'python{0}'.format(self.spec['python'].version.up_to(2)),
'site-packages'))
def cmake_args(self):
spec = self.spec
options = []
if '+static' in spec:
options.extend(['-DMEDCOUPLING_BUILD_STATIC=ON'])
else:
options.extend(['-DMEDCOUPLING_BUILD_STATIC=OFF'])
if '+mpi' in spec:
options.extend([
'-DMEDCOUPLING_USE_MPI=ON',
'-DSALOME_USE_MPI=ON'])
else:
options.extend([
'-DMEDCOUPLING_USE_MPI=OFF',
'-DSALOME_USE_MPI=OFF'])
if '+in64' in spec:
options.extend(['-DMEDCOUPLING_USE_64BIT_IDS=ON'])
else:
options.extend(['-DMEDCOUPLING_USE_64BIT_IDS=OFF'])
if '+partitioner' in spec:
options.extend(['-DMEDCOUPLING_ENABLE_PARTITIONER=ON'])
else:
options.extend(['-DMEDCOUPLING_ENABLE_PARTITIONER=OFF'])
if '+metis' in spec:
options.extend(['-DMEDCOUPLING_ENABLE_PARTITIONER=ON'])
options.extend(['-DMEDCOUPLING_PARTITIONER_METIS=ON'])
else:
options.extend(['-DMEDCOUPLING_PARTITIONER_METIS=OFF'])
if '+scotch' in spec:
options.extend(['-DMEDCOUPLING_ENABLE_PARTITIONER=ON'])
options.extend(['-DMEDCOUPLING_PARTITIONER_SCOTCH=ON'])
else:
options.extend(['-DMEDCOUPLING_PARTITIONER_SCOTCH=OFF'])
options.extend([
'-DMEDCOUPLING_BUILD_DOC=OFF',
'-DMEDCOUPLING_ENABLE_PYTHON=ON',
'-DMEDCOUPLING_ENABLE_RENUMBER=OFF',
'-DMEDCOUPLING_PARTITIONER_PARMETIS=OFF',
'-DMEDCOUPLING_PARTITIONER_PTSCOTCH=OFF',
'-DMEDCOUPLING_MICROMED=OFF',
'-DMEDCOUPLING_BUILD_TESTS=OFF'])
return options