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Author SHA1 Message Date
Denis Davydov
27801c354b fix MacOs class for Sierra (#1811) 2016-09-20 17:25:23 -07:00
Massimiliano Culpo
eb8a0ef75e fix : failing unit tests due to missing self (#1806) 2016-09-20 07:47:13 -07:00
Eric
c9fe2cd469 Fix format string (in class RemoveFailedError) (#1803) 2016-09-20 02:27:35 -07:00
Massimiliano Culpo
ea446c0f0e lmod : added support for the creation of hierarchical lua module files (#1723) 
Includes :
- treatment of a generic hierarchy (i.e. lapack + mpi + compiler)
- possibility to specify which compilers are to be considered Core
- correct treatment of the 'family' directive
- unit tests for most new features
 2016-09-20 02:26:25 -07:00
Eric
efadc0e299 Allow multi-user installations (#1804) 
When re-using previously downloaded tarballs, spack copies from
`var/spack/stage/PACKAGE-VERSION-HASH/downloaded_file` to
`var/spack/cache/PACKAGE/downloaded_file`. This fails if the source is owned by
a different user (`shutil.copy` tries to retain all meta data including file
ownership). Change to a non-meta-data copy function (`shutil.copyfile`).
 2016-09-20 02:18:26 -07:00
Michael Kuhn
7043fff807 Fix location -p and -P (#1776) 2016-09-15 10:48:28 +08:00
Erik Schnetter
6117ef44e4 Make libstdc++-detection work on Darwin (#1778) 2016-09-15 10:42:14 +08:00
Adam J. Stewart
a22f5d8d86 Don't overwrite PYTHONPATH in docs Makefile (#1693) 2016-09-08 09:02:56 -07:00
scheibelp
fd02a140c4 Fix fetching non-expanded resources from mirrors (#1310) 
This closes #1308, where fetching a non-expanded resource from a mirror
will cause an error.

This also ensures that when a URL resource is fetched from a mirror,
that it will be named as though it were retrieved from the original
URL. This is particularly useful for non-expanded resources since it
ensures that the resource name is consistent for the installation
(this is less important for expanded resources because the build takes
place inside the expanded resource).
 2016-09-07 07:02:24 -07:00
Todd Gamblin
f34dd94166 Add debug command for creating tarball of install DB. 2016-09-06 07:55:54 -07:00
alalazo
fc576a40d6 modules : ('build',) type dependencies are not accounted when autoloading 
fixes #1681
 2016-09-06 15:07:11 +02:00
alalazo
47f6a6d3cf Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase 
Conflicts:
	lib/spack/spack/build_environment.py
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/astyle/package.py
	var/spack/repos/builtin/packages/lzo/package.py
	var/spack/repos/builtin/packages/openjpeg/package.py
	var/spack/repos/builtin/packages/swiftsim/package.py
 2016-09-04 10:12:52 +02:00
Axel Huebl
16c5403ab3 spack boostrap: fix missing include (#1657) 
fix a missing include in booststrap.
found on debian 8 with python 2.7
 2016-09-03 09:43:00 -07:00
Massimiliano Culpo
497bbb3ae3 added package : pexsi (#1550) 
* pexsi : added package
* cp2k : added pexsi (works for gcc+openmpi with and without plumed)
 2016-09-03 08:13:47 -07:00
Todd Gamblin
07fa1cd5f8 Attributes for directives need to be set at class construction time. (#1718) 
- moved ensure_dicts() call from Package.__init__ to
  Package.__metaclass__.
 2016-09-02 15:10:30 -07:00
Todd Gamblin
c8b4f978e1 Clean up stable hashing so that specs don't contain !!python/object/apply 
- only output basic lists, dicts, etc.
- spec and database now parse and write specs as ordered data.
 2016-09-02 03:03:47 -07:00
Todd Gamblin
674434b0fc Merge branch 'UCL-RITS-hash_stability' into bugfix/hash-collision 2016-09-02 03:03:25 -07:00
Todd Gamblin
9268b7aa7c Fix hash copying in _dup. 
- Spec._dup() incorrectly copied cached hashes and normal/concrete values
  even when dependency structure was not preserved.

- Now these are only copied when *all* dependencies are copied.
 2016-09-02 01:26:19 -07:00
Todd Gamblin
69d45b49e9 Fix hash handling in directory layout 
- Currently, build dependencies are not currently hashed; we are waiting
  to hash these until we have smarter concretization that can reuse more
  installed specs.  The layout needs to account for this when checking
  whethert things are installed.
 2016-09-02 01:26:01 -07:00
Todd Gamblin
69b68153a1 Fix spack reindex so that it will work if DB is corrupt (duh). 
- Transaction logic had gotten complicated -- DB would not reindex when
  corrupt, rather the error would be reported (ugh).

- DB will now print the error and force a rebuild when errors are
  detected reading the old databse.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
bee5c05568 Update tests to reflect new in-memory hashing vs. coarser dag_hash. 
- Spack currently not hashing build deps (to allow more reuse of packages
  and less frequent re-installing)

- Fast in-memory hash should still hash *all* deptypes, and installed
  specs will only reflect link and run deps.

- We'll revert this when we can concretize more liberally based on what
  is already installed.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
235a045d08 Add option to copy only certain deptypes to Spec.copy() 
- can now pass these to Spec.copy() and Spec._dup():
  - deps=True
  - deps=False
  - deps=(list of deptypes)

- Makes it easy to filter out only part of a spec.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
409e7a2e64 Faster database loading. 
- use a 3-pass algorithm to load the installed package DAG.

- avoid redundant hashing/comparing on load.
 2016-09-01 11:29:32 -07:00
Todd Gamblin
a8aad95d41 Specs now cache result of "fast" in-memory hash. 
- Hash causes major slowdown for reading/setting up large DBs

- New version caches hash for concrete specs, which includes all specs in
  the install DB
 2016-09-01 11:29:32 -07:00
Todd Gamblin
c46a15b574 Fix dependency bug in database. Fixes #1265, #1320. 2016-09-01 11:25:01 -07:00
Todd Gamblin
4a87d4ab8e Make gh-pages redirect to readthedocs.io 2016-08-31 19:40:22 -07:00
Erik Schnetter
efc570afab Expand/clarify description of dependency types 2016-08-31 14:42:32 -04:00
Todd Gamblin
0ff048521b Fix modules.rst doc build warning. 2016-08-30 22:15:13 -07:00
Todd Gamblin
3a9388b43a Move sphinx-apidoc into conf.py, too. 2016-08-30 21:02:34 -07:00
Todd Gamblin
32834dd67d fix sys.path in conf.py 2016-08-30 20:50:14 -07:00
Todd Gamblin
05545a2528 test. 2016-08-30 20:49:56 -07:00
Todd Gamblin
41675e5ed6 sorted command index, better colification. 2016-08-30 20:49:56 -07:00
Todd Gamblin
176a84a828 Don't test sphinx-generated conf.py for flake8 issues. 2016-08-30 20:30:43 -07:00
Todd Gamblin
d9c5191563 Fix issue with path to Spack. 2016-08-30 19:57:33 -07:00
Todd Gamblin
fc748eb3d0 Exclude spack.__all__ from documentation. 
Everything in the __all__ list in the spack module is from some other
module, so only do their documentation in their original location.  This
also avoids issues like the fact that some directive names shadow spack
core module names.
 2016-08-30 16:36:50 -05:00
Adam J. Stewart
1be6267149 Undo changes to trailing triple quotes in docstring 2016-08-30 16:28:55 -05:00
Adam J. Stewart
9b455e9254 Resolve new documentation issues that have cropped up 2016-08-30 15:58:22 -05:00
Adam J. Stewart
ae2a803496 Make subcommands importable, '-' -> '_', fixes #1642 2016-08-30 15:36:33 -05:00
Adam J. Stewart
8d1a753a1b Fix spack --profile, fixes #1639 2016-08-30 15:35:58 -05:00
Adam J. Stewart
6795f4ca12 Use console instead of shell syntax lexer, fixes #1634 2016-08-30 15:35:58 -05:00
Adam J. Stewart
f78134efa5 Fixes #1620, Missing references 2016-08-30 15:32:54 -05:00
Adam J. Stewart
867a92f083 Fixes #1618, Problems with spack package-list 2016-08-30 15:32:54 -05:00
Adam J. Stewart
69e50595bf Fix docstrings for core Spack libraries, fixes #1612 2016-08-30 15:32:54 -05:00
Adam J. Stewart
02239c094e Fix unexpected indentation in .rst files, #1612 2016-08-30 15:29:51 -05:00
Adam J. Stewart
0614bd206f Fix #1608, Include file not found 2016-08-30 15:28:09 -05:00
Adam J. Stewart
2326355497 Fix #1604 and fix #1605, title underline problems 2016-08-30 15:28:08 -05:00
Adam J. Stewart
fda7fcd73d Fix #1594, duplicate explicit target name 2016-08-30 15:21:15 -05:00
Todd Gamblin
dae00fec29 Move all documentation generation into conf.py 
- extra steps in Makefile are ignored by readthedocs
 2016-08-30 00:47:04 -07:00
Massimiliano Culpo
3ecf4ef8c9 resources : added docs fixes #1551 (#1627) 2016-08-29 22:40:50 -07:00
Todd Gamblin
8ab47537c7 Fix exception constructors. (#1663) 2016-08-29 22:34:47 -07:00
Todd Gamblin
f7ee8d001a Merge pull request #1564 from adamjstewart/features/create 
Suggest setuptools when creating Python package
 2016-08-29 09:11:45 -07:00
Tyler Esser
83897af710 Documentation: Fix accidental quotation. version() takes expand as a keyword. (#1640) 2016-08-28 20:16:08 -07:00
Todd Gamblin
2053db4d17 Make clang detection work on AWS Ubuntu14. 2016-08-27 17:04:46 -07:00
Todd Gamblin
7ebb17e459 Remove stale operating_system.py test per discussion in #1631 
- Test has not been registered in `__init__.py` for a while and needs a
  refresh.
 2016-08-25 21:20:34 -07:00
Todd Gamblin
e9bc3a9e32 Merge pull request #663 from citibeth/efischer/160327-DocumentationImprovements 
[RtM] Documentation Improvements
 2016-08-25 02:04:30 -07:00
Todd Gamblin
062ff13da6 Make spack info print deps in sorted order 2016-08-24 14:10:25 -07:00
Elizabeth Fischer
85be3aefa7 Put url_for_version() after versions in example. 2016-08-24 15:26:19 -04:00
Tom Scogland
2b6833cb80 appeasing flake8, also cleaning up header 
The header append lines were too long, so I just converted it into a
multi-line string template so it's all one piece now instead of a bunch
of appends.
 2016-08-24 11:56:33 -07:00
Tom Scogland
73620fe868 avoid specifying --delim unless required 
This increases portability of generated module files to versions of
environment_modules hearkening back to just after the turn of the
millennium.
 2016-08-24 11:00:16 -07:00
citibeth
8a481e7e13 Added CMake-based Development case study to docuemntation. 2016-08-23 16:39:01 -04:00
Elizabeth F
86d39255ec Explained url_for_version() 2016-08-23 16:39:01 -04:00
citibeth
2efd7a5e0b Added note on use of 'less -R' for colorized output. 2016-08-23 16:36:02 -04:00
Adam J. Stewart
df623dad15 Suggest setuptools when creating Python package 2016-08-19 14:31:42 -05:00
Nicolas Richart
37faa41b6f stripping the links to remove spaces and '\n' 2016-08-15 21:13:25 +02:00
Todd Gamblin
1e673bfa42 Don't assume spack is in the path when buildign docs. 2016-08-15 10:49:09 -07:00
Adam J. Stewart
c815aed207 Update documentation for spack md5 2016-08-12 10:51:56 -05:00
becker33
ec7f58bf96 Merge pull request #1493 from xjrc/bugfix/nonbool-variants 
Bug Fix : Allow Packages to Have Variants w/ Non-Bool, Non-String Defaults
 2016-08-11 11:33:54 -07:00
Matt Belhorn
568305ddff Corrects Cray compiler name and adds missing version flag. 2016-08-11 13:56:21 -04:00
Mayeul d'Avezac
7769367747 dag_hash stabilised by depending on sorted dict 
Spec.to_node_dict uses OrderedDict

This is to try and ensure that the dag_hash is stable across python
version and processes.
 2016-08-11 16:03:50 +01:00
alalazo
f5433477b9 qa : flake8 issues 2016-08-11 09:08:00 +02:00
alalazo
b4b9ebe7d7 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/llnl/util/tty/log.py
	lib/spack/spack/__init__.py
	lib/spack/spack/cmd/install.py
	lib/spack/spack/cmd/setup.py
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/blitz/package.py
	var/spack/repos/builtin/packages/gmp/package.py
	var/spack/repos/builtin/packages/qhull/package.py
	var/spack/repos/builtin/packages/szip/package.py
 2016-08-11 08:55:20 +02:00
Todd Gamblin
867121ca68 Move jsonschema files out of config.py to their own package. 2016-08-10 16:33:38 -07:00
Todd Gamblin
bf1072c902 Make Spack core PEP8 compliant. 2016-08-10 16:33:37 -07:00
Todd Gamblin
e7f4fd404d Fix superclass constructor for SpackNamespace objects. 2016-08-10 15:54:13 -07:00
Joseph Ciurej
aa860bf4df Fixed a bug that was making packages with non-bool default variants to crash. 2016-08-10 11:54:33 -07:00
George Hartzell
4bca1c5440 Fix typo 'flexbile' -> 'flexible' 2016-08-09 15:13:08 -07:00
Todd Gamblin
9d4a36a62f Properly re-raise exceptions from lock context handler. 2016-08-09 02:25:09 -07:00
Todd Gamblin
0c75c13cc0 Flake8 fixes 2016-08-09 02:25:07 -07:00
Todd Gamblin
102ac7bcf1 Move provider cache to home directory and refactor Transactions 
Major stuff:

- Created a FileCache for managing user cache files in Spack.  Currently just
  handles virtuals.

- Moved virtual cache from the repository to the home directory so that users do
  not need write access to Spack repositories to use them.

- Refactored `Transaction` class in `database.py` -- moved it to
  `LockTransaction` in `lock.py` and made it reusable by other classes.

Other additions:

- Added tests for file cache and transactions.

- Added a few more tests for database

- Fixed bug in DB where writes could happen even if exceptions were raised
  during a transaction.

- `spack uninstall` now attempts to repair the database when it discovers that a
  prefix doesn't exist but a DB record does.
 2016-08-09 00:24:54 -07:00
Todd Gamblin
2042e9a6d8 Fix bugs with sparse spec printing. 
- Make namespace, arch, and dependnecies show up in spec yaml
  only if they're set.

- Lost some of this functionality with deptypes
 2016-08-08 21:04:23 -07:00
Todd Gamblin
1339714eec Restore text output in verbose mode. 2016-08-08 21:04:23 -07:00
Todd Gamblin
5d690c9270 Make compiler command test last until caching is fixed. 
- global compiler cache breaks tests that come after this one.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
e5743db9b9 Fix issues with import order in tests. 
- modules weren't set properly as attributes in parent modules
 2016-08-08 21:04:23 -07:00
Todd Gamblin
d195576fba WIP 2016-08-08 21:04:23 -07:00
Todd Gamblin
5e5024342f Fix iterator invalidation issues. 2016-08-08 21:04:23 -07:00
Todd Gamblin
4de45c2684 fix scoping issue. 2016-08-08 21:04:23 -07:00
Todd Gamblin
ce6ac93abe rename virtual module to provider_index 2016-08-08 21:04:23 -07:00
Todd Gamblin
1f5a21decf Fix namespace support in Repo.get_pkg_class() 2016-08-08 21:04:23 -07:00
Todd Gamblin
ab049eca41 Faster key in FlagMap._cmp_key 2016-08-08 21:04:23 -07:00
Todd Gamblin
37fc258313 Remove vestigial methods from Package. 2016-08-08 21:04:23 -07:00
Todd Gamblin
faa0a0e4c3 Add a ProviderIndex cache. 
- Spack will check if the index needs updating, and will only parse
  all package files if it does.

- Spack tries to parse as few package files as necessary.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
cf2f902b82 Make ProviderIndexes mergeable, so we can cache them per-repo. 2016-08-08 21:04:23 -07:00
Todd Gamblin
bf028990e7 Make ProviderIndex yaml-izable. 
- allow a provider index to be stored and re-read.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
025609c63f More compact YAML formatting for abstract specs. 
- Don't add empty/absent fields to Spec YAML when they're not there.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
7aaad89ba9 Lazily evaluate all_package_names in repository.py 
- Don't need to list all packages unless we have to.

- Only use the list of all packages for existence checks if we have
  generated it for some other purpose.
 2016-08-08 21:04:23 -07:00
Adam J. Stewart
5d48c108a3 Only strip newline chars, not spaces 2016-08-08 15:02:05 -05:00
Glenn Johnson
20221ee3aa Catch error for version in VCS 
This PR will catch the error where the url can not be determined from a
VCS URL, such as git. It will print a message to the console and move on
because it should not be a fatal error at this point in the process.

This should fix #1459.
 2016-08-05 11:16:43 -05:00
Todd Gamblin
6ab78eb88e sbang filtering now works on non-writable files. (#1445) 
- sbang now changes mode to writable and restores mode if a file is not
  writable.
 2016-08-04 10:46:45 -07:00
becker33
369b2ef01f Merge pull request #1330 from suraia/fix-ascii-graph 
Fix graph command with ASCII output
 2016-08-04 09:37:24 -07:00
Torbjörn Lönnemark
61b3ecb6d2 Fix flake8 issues 2016-08-04 16:28:14 +02:00
Torbjörn Lönnemark
a591e183bc Fix incorrect indentation 2016-08-04 16:09:49 +02:00
Michael Kuhn
2bd1a51193 flake8 fixes 2016-08-04 13:07:33 +02:00
Michael Kuhn
1578a95982 Fix tests. 2016-08-04 13:07:33 +02:00
Michael Kuhn
7affaca321 Fix graph command with ASCII output. 2016-08-04 13:07:33 +02:00
James Riley Wynne III
f0609699ba Added parens to %'s arguments. Fixes #1432 2016-08-03 17:16:04 -04:00
Kelly (KT) Thompson
46e9d85283 Cray: Fix a typo that could cause an infinite recursion when calling /env/cc. 
fixes #1428
 2016-08-03 14:15:44 -06:00
becker33
7ae163d436 Merge pull request #1361 from epfl-scitas/features/module_token_expansion_in_environment 
module : token expansion in environment
 2016-08-03 09:49:28 -07:00
Adam J. Stewart
941acef009 spack create should use setup_py() instead of python() 2016-08-02 12:20:28 -05:00
becker33
326b9838ed Merge pull request #1423 from glennpj/fix_url 
Move archive_version setting to if block
 2016-08-02 10:05:25 -07:00
Glenn Johnson
2929fb0a4d Move archive_version setting to if block 
The archive_version variable should only get set if versions will be
checked and that is only if there is a list_url in the package file. For
VCS repos setting the variable triggers an error from web.py as it
parses the default_fetcher object.

This should fix #1422.
 2016-08-02 11:54:09 -05:00
becker33
21158195fb Merge pull request #1354 from paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant 
Bugfix/preferred variants do not recognise  -variant
 2016-08-02 09:15:06 -07:00
Gregory Becker
679ceabf36 fixed flake8 errors 2016-08-01 17:22:13 -07:00
Gregory Becker
31042e8ed1 further improved error message 2016-08-01 17:16:06 -07:00
Gregory Becker
2705f2c0e3 changed error raised in concretize compiler to provide better error message 2016-08-01 17:11:10 -07:00
becker33
c678a9e3da Merge pull request #1417 from LLNL/features/combined-cray-platform-cleanup 
Removed vestigial cray_xc platform in favor of combined cray platform
 2016-08-01 16:26:20 -07:00
Gregory Becker
0cf1f917d5 fixed architecture test 2016-08-01 16:17:31 -07:00
Mario Melara
0425f5d523 Add import statement 
Add missing import statement for join_path
 2016-08-01 15:59:30 -07:00
Gregory Becker
0ce98d4d65 Removed vestigial cray_xc platform in favor of combined cray platform 2016-08-01 15:43:11 -07:00
becker33
7f43a7d134 Merge pull request #1376 from mpbelhorn/olcf/unified_cray_platform 
Olcf/unified cray platform
 2016-08-01 15:40:11 -07:00
Matt Belhorn
661708b7fa Fixes Flake8 indentation errors. 2016-08-01 17:27:33 -04:00
Matt Belhorn
ae167c09fc Prefers bash over sh. 
Assuming a bash interactive environment will be correctly formed on login, we
should prefer to probe the environment using a shell that reports itself as
`bash` instead of `sh` which may not source files that set the
environment modules in statements like:

```
case "$is" in
bash) test -s /etc/bash.bashrc.local && . /etc/bash.bashrc.local ;;
ksh)  test -s /etc/ksh.kshrc.local   && . /etc/ksh.kshrc.local ;;
zsh)  test -s /etc/zsh.zshrc.local   && . /etc/zsh.zshrc.local ;;
ash)  test -s /etc/ash.ashrc.local   && . /etc/ash.ashrc.local
esac
test -s /etc/sh.shrc.local && . /etc/sh.shrc.local
```
 2016-08-01 17:17:24 -04:00
becker33
14d861a41c Merge pull request #1414 from adamjstewart/fixes/filter_file 
Fix backup=True for filter_file
 2016-08-01 14:10:59 -07:00
Matt Belhorn
e864d27641 Replaces bash-ism source for POSIX-compliant . 
Change is made in order to use `/bin/sh` on systems where `/bin/sh` is not
simply an alias for `/bin/bash --norc`.
 2016-08-01 17:04:09 -04:00
becker33
49e47966a8 Merge pull request #1357 from hartzell/patch-6 
Fix doc for install_tree (cut/paste error)
 2016-08-01 13:45:20 -07:00
becker33
630ff6871d Merge pull request #1346 from glennpj/url_list_fetch 
Url list fetch
 2016-08-01 13:37:57 -07:00
Adam J. Stewart
5b79f0d04a Fix backup=True for filter_file 2016-08-01 15:35:02 -05:00
Glenn Johnson
19578d954f Fix flake8 line length errors 2016-08-01 13:37:42 -05:00
Matt Belhorn
aaa5c9e8a4 Writes default module list to terminal when debugging. 2016-08-01 12:05:29 -04:00
Paul Hopkins
cca240c8f9 Add concretize_preferences tests 2016-08-01 16:18:11 +01:00
Matt Belhorn
dc7e0899a0 Invokes subshell without user init scripts. 2016-07-30 11:38:34 -04:00
Matt Belhorn
5e97eb5ec4 Obtains default modules from a clean subshell. 
The list of default environment modules is obtained by calling

`module list -lt`

from a subshell with a wiped environment. This allows `/etc/profile` and other
init scripts to be fully sourced which should generally include loading the
default modules.

The list of default modules is then parsed for the first acceptable CPU target,
assumed to be the back_end target.
 2016-07-29 15:02:25 -04:00
Paul Hopkins
5eebb2defa Use space characters to separate preferred variants from package name and each other 2016-07-29 13:02:47 +01:00
robertdfrench
eab56b71be PEP8 Goodness 2016-07-27 13:11:24 -04:00
Matt Belhorn
3040381f03 Front-end unification for Cray systems. 
A platform to generically cover all Cray systems is introduced to avoid having
specific platforms for each of XK (XE, XT), XC, and future systems using CrayPE
and CNL.

The platform searches for 'front_end' and 'back_end' targets, in order, from:

  * Environment variables 'SPACK_FRONT_END' and 'SPACK_BACK_END'
  * A spack configuration file 'targets.yaml'
  * Parsing `/etc/bash.bashrc.local` for first loaded CrayPE CPU target.

If a back_end target is not found through one of these methods, an exception is
raised. Otherwise, the back_end is set as the default target. The shell init
script search is based on recommendations in Crayports case #144359.

No automagic way of determining front_end targets has been found (to date) so if
a front_end is not specified through configuration, it is ignored which should
leave a spack instance in a consistant state.
 2016-07-27 11:37:15 -04:00
Matt Belhorn
b1e6c58ff2 Adds __str__ method to CNL operating system class. 2016-07-27 11:25:23 -04:00
Matt Belhorn
4e6fdd12e2 Adds targets config file 2016-07-27 11:25:23 -04:00
alalazo
9c7b98dcc8 modules : handle dashes in environment variables 2016-07-26 09:03:17 +02:00
becker33
e4ced765f1 Merge pull request #1353 from epfl-scitas/qa/minor_cleanup 
qa : minor cleanup
 2016-07-25 10:34:43 -07:00
alalazo
c6a05f4a7d qa : flake8 issues fixes #1109 2016-07-25 18:22:09 +02:00
alalazo
3126ed5f21 modules : permit token expansion in configuration files 2016-07-25 18:10:27 +02:00
George Hartzell
d684b17c06 Fix doc for install_tree (cut/paste error) 
It looks like the docs for copy_tree were cut/paste from copy and still referred to installing a "file".

This fixes that.
 2016-07-25 08:45:44 -07:00
alalazo
5cfaa557d3 qa : flake8 issues 2016-07-25 10:19:58 +02:00
alalazo
23006d1195 spec : removed dead code 2016-07-25 09:05:50 +02:00
Glenn Johnson
b1e5ec0573 Make sure package has the url attribute. 
In addition to `list_url` make sure the package has the `url` attribute
set before attempting to add urls from a list. This is to cover the case
where there may be a `list_url` specified in tandem with a
`url_for_version`.
 2016-07-24 09:21:11 -05:00
Glenn Johnson
4f09e8c975 Only use list if list_url set 
This commit will make urls from list_url only checked if `list_url` is
set in the package file. This makes more sense as there is no need to
check for those if the attribute is not present. If `url` is present and
`list_url` is not then it would result in the same url. If
`url_for_version` is used then that will not work anyway.
 2016-07-23 22:56:08 -05:00
Glenn Johnson
4181fd79cd Fix flake8 errors related to lines 
Fixed the flake 8 errors that involved too many blank lines or not
enough blank lines. Basically, all of the flake8 errors except line
length errors.
 2016-07-23 19:10:09 -05:00
Glenn Johnson
b51be2bb1b Have fetch use list_url 
This PR allows archive file retrieval from urls derived from the
`list_url` setting in a package file. This allows for continued
retrieval of checksummed archive files even when they are moved to a new
remote location when a package is updated upstream.
 2016-07-23 19:09:58 -05:00
Adam J. Stewart
ebbcebac62 Use example deptypes in newly created packages 2016-07-22 13:55:00 -05:00
alalazo
00d7fd8e21 test_install : removed commented code 2016-07-22 18:14:36 +02:00
Gregory Becker
bcbe9c02da Added cray wrapper names directory to spack_env_paths so the spack compiler wrapper will remove them from the environment (prevents hang) 2016-07-21 14:50:23 -07:00
Gregory Becker
1544f98ee0 fixed flake8 errors 2016-07-21 14:36:10 -07:00
Gregory Becker
f0d5317913 fixed 2016-07-21 14:11:34 -07:00
Gregory Becker
2ae7429b18 Bug fix for cray_xc platform 2016-07-21 14:04:22 -07:00
Todd Gamblin
098af17971 Merge pull request #1208 from paulhopkins/bugfix/github1196-specify-preferred-variants 
Bugfix/github1196 specify preferred variants
 2016-07-21 08:36:19 -07:00
Paul Hopkins
00280936da Flake8 fixes to ensure qa tests pass 2016-07-21 13:12:58 +01:00
Paul Hopkins
480fe9cb9a Re-add documentation for variant preferences 2016-07-21 12:32:00 +01:00
Paul Hopkins
bd91dd9d6d Allow users to supply preferred variants via packages.yaml 2016-07-21 12:32:00 +01:00
Michael Kuhn
4e1f86881a Update documentation for recursive module loading. 2016-07-21 13:15:10 +02:00
Glenn Johnson
16f67b5bb1 Setup environment for Intel Parallel Studio 
Set up the environment for the Intel compilers and tools. This commit
does the following:

- Unset variables that were incorrect from the auto guess prefix
  inspections.
- Add a RemovePath environment_modifications_formats for dotkit.
- Set the module environment variables appropriate for the different
  variants.
- Change the component logic so that the '+all' variant works. It was
  getting split by letter and leaving COMPONENTS empty.
- Added a variant checking function.
- Added NONRPM_DB_DIR to the silent.cfg so that the product database
  goes to the installation directory.
- With the product database in prefix the code to remove the product
  database file from the home directory is no longer needed and was
  removed.
- Reformat the 'tools' variant description.

There are probably more variables needed for the '+tools' for the
'professional' product version but I do not have access to that.
 2016-07-20 19:54:35 -05:00
alalazo
b92deda41b spack setup : work as in documentation for openjpeg 2016-07-20 22:27:01 +02:00
Todd Gamblin
8856a226c7 Merge pull request #1277 from mathstuf/special-deptypes 
deptypes: support special deptypes by string
 2016-07-20 13:15:57 -07:00
Gregory Becker
eda1176ba7 added package as argument to setup_platform_environment 2016-07-20 12:26:31 -07:00
Gregory Becker
6983c1d30d Documented linker default 2016-07-20 12:04:00 -07:00
alalazo
40cb314638 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/spack/package.py
 2016-07-20 21:02:19 +02:00
Gregory Becker
412618d531 fixed flake errors 2016-07-20 11:52:16 -07:00
Gregory Becker
7db4170062 removed commented-out code 2016-07-20 11:36:47 -07:00
Gregory Becker
f4fb9a0771 Set default link type to dynamic on cray. Includes hooks for platform-based environment changes 2016-07-20 11:35:13 -07:00
Gregory Becker
106147716a fixed flake errors 2016-07-20 11:00:56 -07:00
Gregory Becker
0d18f7249c fixed flake errors 2016-07-20 10:50:18 -07:00
Gregory Becker
26d1ddc176 Improved cray_xc detection bug fix 2016-07-20 10:28:38 -07:00
Gregory Becker
4c506b36c5 Improved cray_xc detection 2016-07-20 10:25:07 -07:00
Todd Gamblin
01a361d637 Merge pull request #1288 from LLNL/features/cray_compiler_names 
Let packages call use_cray_compilers() in install to get , etc set to…
 2016-07-20 09:45:36 -07:00
Todd Gamblin
6501cba5a7 Merge pull request #1309 from LLNL/features/spack-defaults 
Add "default" configuration scope.
 2016-07-19 23:48:12 -07:00
Todd Gamblin
26480f14f9 Add "default" configuration scope. 
- Default scope is versioned with spack and can be overridden by site
  or user config.

- Default scope provides sensible default concretization preferences
  for all of Spack.

- per-platform concretization scope can be added later (to force a
  particular MPI on, e.g., Cray systems)
 2016-07-19 17:10:17 -07:00
Todd Gamblin
dd7bd4f320 Make frontend OS on Cray machines a proper linux distro. 2016-07-19 14:59:04 -07:00
Ben Boeckel
1315753e70 deptypes: support special deptypes by string 2016-07-19 16:26:18 -04:00
alalazo
acfeb5d043 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh 
Conflicts:
	lib/spack/spack/test/__init__.py
 2016-07-19 09:05:27 +02:00
becker33
013cfafe57 Merge pull request #1229 from suraia/fix-preferred-providers 
Fix preferred providers.
 2016-07-18 16:47:08 -07:00
Gregory Becker
218fc602fa Let packages call use_cray_compilers() in install to get , etc set to cray names 2016-07-18 15:43:21 -07:00
Todd Gamblin
4a276807b1 Merge pull request #1245 from LLNL/features/cray-detection-improvement 
The /cray_home directory is more consistent than the /cray/craype dir…
 2016-07-18 14:36:08 -07:00
Todd Gamblin
51834773b4 Merge pull request #851 from mathstuf/safer-bootstrap 
bootstrap: fall back to the default upstream URL
 2016-07-18 14:25:29 -07:00
Gregory Becker
46ee4a3a53 Using cc -craype-verbose to get cray platform type 2016-07-18 14:25:17 -07:00
Todd Gamblin
653f25d676 Merge pull request #1171 from adamjstewart/features/octave 
Allow spack create to automatically detect octave build system
 2016-07-18 12:32:32 -07:00
Michael Kuhn
19df1ea79d flake8 fix 2016-07-18 17:53:26 +02:00
Paul Hopkins
a46138dea9 More flake8 fixes for package-list 2016-07-18 13:59:58 +01:00
Adam J. Stewart
89c9bec81e Flake8 2016-07-18 07:45:28 -05:00
Adam J. Stewart
262ab40188 Update build_system_guess test with new class name 2016-07-18 07:45:28 -05:00
Adam J. Stewart
199a8af7cc Flake8 2016-07-18 07:45:28 -05:00
Adam J. Stewart
e9f42c1a94 Allow spack create to automatically detect octave build system 2016-07-18 07:45:27 -05:00
alalazo
a96eb7096d Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh 
Conflicts:
	share/spack/setup-env.sh
 2016-07-18 14:12:47 +02:00
Paul Hopkins
cc027148eb Flake8 fixes in cmd/package-list.py file 2016-07-18 12:52:23 +01:00
Paul Hopkins
2b3ba850b3 Fix spack package-list to correctly handle deptypes 2016-07-18 12:51:58 +01:00
Todd Gamblin
b3789a4693 Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas 
Pkg/hypre trilinos blas
 2016-07-18 03:06:37 -07:00
Todd Gamblin
cddaba8add flake8 fixes. 
- package.py
- spec.py
- test/architecture.py
 2016-07-18 02:34:24 -07:00
Todd Gamblin
192369dd2b Fix #1265: Errors in spack reindex 
- Consolidated code to read spec.yaml and database index.yaml into
  one method (`read_yaml_dep_specs()`) in spec.py.

- Code understands old hash format, tuple format, and dicts for dep
  specs, for backward compatibility.

- Spec YAML now uses a dict with keys to represent dep specs (this is
  more future-proof).

- Dep specs no longer contain !!py-tuple entries in YAML (only lists
  properly YAML-ize)

- bump database version.
 2016-07-18 01:19:07 -07:00
Todd Gamblin
73f10c9363 Fix broken spack info command after build dep merge. 
- Added a method to get dependencies of particular types from Package
- Fixed info command.
 2016-07-18 01:19:07 -07:00
Todd Gamblin
cdc2ebee90 Better error messages for spack reindex. 2016-07-18 01:14:47 -07:00
alalazo
6c00a13ed5 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	var/spack/repos/builtin/packages/swiftsim/package.py
 2016-07-18 08:49:24 +02:00
Todd Gamblin
117743863e Merge pull request #1252 from hartzell/patch-5 
Fix format of explanation of an example & question
 2016-07-17 21:20:02 -07:00
Todd Gamblin
0e8bf79fa4 Merge pull request #1240 from epfl-scitas/truncated_documentation 
doc : fixes #1239
 2016-07-17 20:59:36 -07:00
alalazo
dc671ad037 docs : substituted None with empty cell 2016-07-17 22:17:52 +02:00
Denis Davydov
9ea4f80f15 flake8 fixes 2016-07-16 07:58:51 +02:00
Denis Davydov
992250ddea add to_lib_name() to get library name from a path 2016-07-16 07:24:05 +02:00
Michael Kuhn
d61190c3ff Explicitly request zmpi in module blacklist test. 2016-07-16 00:48:04 +02:00
becker33
63101e9914 Merge pull request #1261 from adamjstewart/features/create-deptype 
Automatically add deptype to newly created packages
 2016-07-15 15:10:10 -07:00
Adam J. Stewart
8c1cc44522 Automatically add deptype to newly created packages 2016-07-15 16:43:25 -05:00
becker33
e822257565 Merge pull request #1251 from hartzell/patch-4 
Minor typo fix
 2016-07-15 13:51:02 -07:00
alalazo
833b0ac282 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/spack/__init__.py
	var/spack/repos/builtin/packages/gmp/package.py
	var/spack/repos/builtin/packages/openjpeg/package.py
 2016-07-15 11:03:02 +02:00
alalazo
893a5565fe Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/spack/__init__.py
	var/spack/repos/builtin/packages/gmp/package.py
	var/spack/repos/builtin/packages/openjpeg/package.py
 2016-07-15 11:02:55 +02:00
alalazo
1f3cb2b93c Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh 
Conflicts:
	lib/spack/spack/cmd/module.py
 2016-07-15 10:37:27 +02:00
Ben Boeckel
5d152edcaf spec: assign namespaces to the full dependency DAG 2016-07-14 16:33:48 -04:00
Ben Boeckel
faa3d43d9c package: mention the package that is no concrete 2016-07-14 16:33:38 -04:00
Ben Boeckel
45c675fe7f spack: introduce dependency types 
deptypes: allow for different queries

For things like Python modules, they are required for the build and
runtime, but rather than adding a new parameter for what to query across
the dependency DAG, just expose the recursive query parameter.
 2016-07-14 16:21:46 -04:00
Ben Boeckel
bae97d17d0 test: use file:// url for git repos 2016-07-14 16:21:45 -04:00
Ben Boeckel
6d2ec9baf7 test/stage: use os.path.realpath on the test paths 
When var/spack/stage is a symlink, the tests fail since realpath is used
on the resulting path, but not the original path, so the string compare
fails. Smarter path testing might be a better option.
 2016-07-14 16:21:45 -04:00
Ben Boeckel
b4682c8ca3 directory_layout: fix error path when specs conflict 2016-07-14 16:21:45 -04:00
Ben Boeckel
e275b567eb typos: fix some typos 2016-07-14 16:21:45 -04:00
George Hartzell
3e718920d1 Remove extraneous letter 'p' 
It got in there by mistake, now it's gone.
 2016-07-14 09:40:47 -07:00
George Hartzell
3051c3d71d Fix format of explanation of an example & question 
This list was not formatted correctly on [the ReadTheDocs site](http://software.llnl.gov/spack/basic_usage.html#specs-dependencies).

I'm not a .rst expert, but I think that it was improperly indented.

The example includes an `arch=...` string but *arch* is not listed in the valid compiler flag specifiers or architecture specifiers.  Should it be, or is it considered an "optional variant specifier?
 2016-07-14 08:31:07 -07:00
George Hartzell
e052aaf44d Minor typo fix 
the packages that depends on => the packages that depend on
 2016-07-14 08:19:32 -07:00
alalazo
b8fccb5f61 CMakePackage : added hook for roo CmakeLists.txt, removed duplicated code from build_environment.py 2016-07-14 12:04:24 +02:00
alalazo
1ecea4c2f1 log : refactored acquire and release semantic to meet the context manager protocol 2016-07-14 09:34:01 +02:00
alalazo
00b8e0b567 package.py : joined and simplified try/except blocks in do_install 2016-07-14 09:11:44 +02:00
Michael Kuhn
5ffc50732b flake8 fixes 2016-07-13 23:05:08 +02:00
alalazo
9d66b85492 log : changed semantic for start / join (now it's explicit) 2016-07-13 22:51:12 +02:00
alalazo
90b131260b log : changed semantic for start / join (now it's explicit) 2016-07-13 22:50:39 +02:00
alalazo
7cedd620f1 package.py : added CMakePackage, changed qhull, ibmisc, openjpeg to work as examples 2016-07-13 17:36:06 +02:00
alalazo
0e2afedb7f doc : fixes #1239 2016-07-13 12:43:48 +02:00
alalazo
ad16830f71 log : added timeout to avoid deadlocks on daemon join 2016-07-13 11:20:23 +02:00
alalazo
468a6431f9 package.py : workaround for a known bug that was not fixed in python 2.6 
https://bugs.python.org/issue1515
 2016-07-13 11:08:19 +02:00
alalazo
5cc59507f7 package.py : hdf5 and lzo have examples of run_tests 2016-07-13 09:27:09 +02:00
alalazo
97c2224cd6 package.py : extra arguments, fixed inheritance issue 
- added attribute to hold extra arguments in PackageBase instances
- fixed registration from within packages
- examples : hdf5, lzo
 2016-07-13 09:27:09 +02:00
alalazo
813cb032c4 package.py : updated logic to log.py rework 
Conflicts:
	lib/spack/spack/package.py
 2016-07-13 09:27:09 +02:00
alalazo
513cdd580e do_install : can stop at an arbitrary phase 
Now uses a StopIteration exception as a signal
 2016-07-13 09:27:09 +02:00
alalazo
9af964a6d6 log_output : moved from os.fork to multiprocessing.Process 2016-07-13 09:27:09 +02:00
alalazo
440e71ff13 build_environment : moved from os.fork to multiprocessing.Process 2016-07-13 09:27:09 +02:00
alalazo
857d7bfe0f do_install : can stop at an arbitrary phase 
The mechanism would be simpler if we could leverage exceptions to raise signals. Unfortunately forking does not permit to do so.
 2016-07-13 09:27:09 +02:00
alalazo
a43c63f149 package : added EditableMakefile 
Modifications :
- added EditableMakefile to PackageBase subclasses
- astyle modified as an example
- preliminary hook to stop at a certain phase of install
 2016-07-13 09:27:09 +02:00
alalazo
8f75d34331 package : added a stub for AutotoolsPackage, examples in szip and swiftsim 2016-07-13 09:27:09 +02:00
alalazo
8ed028e2d6 package : introduced InstallPhase, added decorators for prerequisites and sanity_checks of phases 2016-07-13 09:27:09 +02:00
alalazo
a36f3764af package : added hooks for generic phases 2016-07-13 09:27:09 +02:00
Todd Gamblin
27aa265abd Merge pull request #1211 from hartzell/patch-3 
Typo: verison -> version
 2016-07-12 13:53:52 -07:00
Michael Kuhn
b7d9b58cc5 Fix preferred providers. 2016-07-12 19:57:08 +02:00
Todd Gamblin
283d621b6e Add documentation for fetching submodules. 2016-07-11 13:27:37 -07:00
Todd Gamblin
86b1b28906 Add submodules option for git fetching. 2016-07-11 13:27:35 -07:00
alalazo
5f861e075c Merged develop into branch 2016-07-11 20:57:55 +02:00
Todd Gamblin
7f6541ef02 Merge pull request #1190 from davydden/feature/version_dev 
add special treatment of @develop version
 2016-07-11 11:31:54 -07:00
Denis Davydov
306e601d4e document special treatment of development version 2016-07-11 19:50:33 +02:00
George Hartzell
fbaff33f3f Typo: verison -> version 2016-07-11 09:44:20 -07:00
George Hartzell
1682257b35 Typo: verison -> version 2016-07-11 09:42:49 -07:00
Denis Davydov
b29d5e6032 add special treatment of develop version 2016-07-10 14:21:52 +02:00
Todd Gamblin
b0f4052bd8 Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes 
--run-tests install argument and petsc fixes
 2016-07-09 12:10:16 -07:00
Todd Gamblin
c086ccdab6 Merge pull request #1200 from glennpj/lowpackname 
Have ``spack create`` default to lower case name for package
 2016-07-08 13:29:52 -07:00
Glenn Johnson
33d0660abc Have `spack create` default to lower case name 
This will create package directories with lower case names when using
`spack create`. The documentation was modified to reflect this.
 2016-07-08 15:11:37 -05:00
George Hartzell
1b9e8a0e65 Fix typo 
Comamnds -> Commands
 2016-07-08 11:01:08 -07:00
Todd Gamblin
b9148b1751 Merge pull request #1125 from NERSC/docs/cray 
Update documentation for use on Cray
 2016-07-06 15:06:20 -07:00
Gregory Becker
403a55afb2 Minor bug fix 2016-07-06 14:54:25 -07:00
Gregory Becker
663b30b3e8 Update target autodetection for linux platform 2016-07-06 14:54:22 -07:00
Denis Davydov
081918d71a add --run-tests argument for install() 2016-07-06 22:45:30 +02:00
Todd Gamblin
03fdb2058a Merge pull request #1176 from epfl-scitas/features/version_minor_improvements 
spack.Version : like a duck!
 2016-07-06 09:01:19 -07:00
alalazo
9b926a480f qa : flake8 issues 2016-07-06 17:03:32 +02:00
alalazo
780a57367d version : modified __getitem__ to return either an item or a Version instance + unit tests 2016-07-06 17:00:48 +02:00
alalazo
32e086f44a version : modified __repr__ to return a string representation of the object + unit tests 2016-07-06 15:24:10 +02:00
William Killian
1f64f08cb3 (bugfix) fixed typo of spec --> raw_spec 2016-07-05 13:32:37 -07:00
Todd Gamblin
d687e332ad Fix compile bugs for gcc on Mac OS X with macports. 
- add macports to things that are cleaned out of the environment.
- linker incompatibilities cause issues with packages like OpenSSL.
- also clean up NOQA stuff in OpenSSL
 2016-07-04 22:59:02 -07:00
Todd Gamblin
690937f953 Add --dirty option to spack install. 
- Allow install to be run without cleaning the environment.
 2016-07-04 22:58:01 -07:00
Todd Gamblin
6bac1598f6 Merge branch 'fix-archive' of https://github.com/mwilliammyers/spack into mwilliammyers-fix-archive 2016-07-04 21:35:33 -07:00
Todd Gamblin
890df7153a Merge branch 'efischer/160311-StagedPackage' of https://github.com/citibeth/spack into citibeth-efischer/160311-StagedPackage 2016-07-04 00:27:32 -07:00
alalazo
6d988dde8d qa : fixed flake8 issues 2016-07-02 12:54:36 +02:00
alalazo
3100c5948a module : added unit tests 2016-07-02 12:14:30 +02:00
Glenn Johnson
31e9ded768 Remove more variables from build environment 
Remove the LIBRARY_PATH and CPATH environment variables before building
a package.
 2016-07-01 20:59:14 -05:00
alalazo
d10fceaacc spack commands : refactoring of cli arguments and common utiities. Implemented suggestions on spack module loads 
- Common cli arguments now are in their own module
 - Moved utilities that can be reused by different commands into spack.cmd.__init__.py
 - Modifications to `spack module loads`
 2016-07-01 23:06:07 +02:00
alalazo
f0f7b23c8a module : added rm subcommand, encapsulated logic for constraints in argarse.Action subclass 2016-07-01 14:27:55 +02:00
alalazo
fe4ef286f2 module : added the command 'load-list' 2016-07-01 12:38:04 +02:00
Mario Melara
56adb5d9a5 Change arch spec and fix typo 
Changed old arch specs to new arch specs. Changed intallation to
installation
 2016-06-30 17:03:07 -07:00
Mario Melara
16a4c49f98 Remove Cray examples of config files 
Removed examples of Cray config files and added them under Spack on
Cray. Any users of Cray can just look at the Spack on Cray section to
get an idea of what's used. If they want more information they can click
links to the sections.
 2016-06-30 17:01:18 -07:00
Mario Melara
d784d561fc Add more documentation fix arch spec 
Added more documentation for Spack on Cray. Also fixed the architecture
spec to be linux-debian7-x86_64 since it was reversed in the previous
commit.
 2016-06-30 16:59:36 -07:00
Massimiliano Culpo
6793a54748 --prefix : defaults to empty string 2016-06-30 23:18:32 +02:00
Massimiliano Culpo
ba1ada5424 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh_reworking 
Conflicts:
	lib/spack/spack/cmd/module.py
 2016-06-30 22:19:46 +02:00
alalazo
a770151359 module : minor improvement to output formatting 2016-06-30 16:49:24 +02:00
Elizabeth Fischer
6327877a6f PEP-8 2016-06-30 09:19:57 -04:00
Elizabeth Fischer
50ac98bc04 Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage 
# Conflicts:
#	lib/spack/docs/packaging_guide.rst
#	lib/spack/spack/package.py

Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently).  Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`.  This got added back in from develop.
 2016-06-30 09:13:24 -04:00
alalazo
ba87937fff module : added detection of file name clashes 2016-06-30 13:44:49 +02:00
alalazo
1b7eedbb7d modules.yaml : added hash_length as a new keyword 
config :
- added `hash_length` under the modules section

EnvModules :
- take into consideration hash_length when constructing `file_name`
- added logic to warn and skip module file writing in case of file name clash
 2016-06-30 12:56:47 +02:00
Todd Gamblin
0e422dec8c Merge pull request #1141 from adamjstewart/fixes/license_docs 
Fix missing code blocks in licensed software documentation
 2016-06-30 02:22:38 -07:00
Todd Gamblin
bc2fa76588 Merge pull request #1146 from scheibelp/features/doc-caching 
added documentation for automatic caching of resources fetched during installs
 2016-06-30 02:13:16 -07:00
Todd Gamblin
30d083c6b7 Merge branch 'efischer/160401-RecursiveModules' of https://github.com/citibeth/spack into citibeth-efischer/160401-RecursiveModules 2016-06-30 02:12:00 -07:00
Peter Scheibel
cfd380d514 added documentation for automatic caching of resources fetched during installs 2016-06-29 18:23:40 -07:00
Ben Boeckel
5f720f9b7c flake8: appease the style checker 2016-06-29 14:49:58 -04:00
Ben Boeckel
e3e94f0ac9 bootstrap: name the current branch the same as the remote 2016-06-29 14:49:19 -04:00
Ben Boeckel
89bf5f4045 bootstrap: allow using alternate remotes 
If you want to bootstrap from a fork, the `--remote` option may be used
to select it.

Also limit the branches to 'develop' and 'master' if the remote is
'origin' since those are the actual integration branches used (other
branches on 'origin' are just PR branches).
 2016-06-29 14:49:19 -04:00
Ben Boeckel
7ec191ce0b bootstrap: use the currently checked out branch 
The `master` branch is not really where Spack development happens, so
default to it, but use the user's current branch if it's there.
 2016-06-29 14:49:19 -04:00
Ben Boeckel
6f69c01915 bootstrap: fall back to the default upstream URL 
Fixes #352.
 2016-06-29 14:49:19 -04:00
Adam J. Stewart
06de8c56af Fix missing code blocks in licensed software documentation 2016-06-29 12:35:38 -05:00
Todd Gamblin
eb388306fd Merge pull request #1112 from adamjstewart/features/dependencies 
Make spack create automatically add dependencies for build system
 2016-06-29 07:57:33 -07:00
Todd Gamblin
c996632113 Add spack purge --cache to purge local archive cache. 2016-06-29 01:41:55 -07:00
Todd Gamblin
bc1320d83a Merge branch 'features/cache-archives' of https://github.com/scheibelp/spack into scheibelp-features/cache-archives 2016-06-29 00:57:26 -07:00
alalazo
b71d430af6 module : can regenerate single module files, homogenized cli options 
spack module :
- refresh accepts a constraint
- find and refresh share common cli options
- ask for confirmation before refreshing
- deleting the module file tree is now optional
 2016-06-28 19:28:18 +02:00
mwilliammyers
0384794912 Fix #1019 - cannot create mirror for git spec 2016-06-27 16:00:38 -06:00
Mario Melara
26325fe812 Add missing link to external packages 
Adding missing _sec-external_packages to link with external packages
page
 2016-06-27 14:35:56 -07:00
Mario Melara
7fb45e4bfd Update documentation for use on Cray 
Updating how to use compilers.yaml on Cray as well as setting up
external packages. Also includes what needs to be set up for usage on
Cray and explains what needs to be done to get Spack properly working.
Also explain the architecture spec and what it does.
 2016-06-27 13:52:48 -07:00
Todd Gamblin
3ea9d1e665 Merge pull request #1122 from LLNL/bugfix/newarch-sys_type 
Bugfix/newarch sys type
 2016-06-27 10:07:03 -07:00
Adam J. Stewart
798dabc8f2 Forgot the unknown key/value pair 2016-06-27 09:01:53 -05:00
Todd Gamblin
0185226042 Merge pull request #1121 from LLNL/bugfix/module-directory-pollution 
Make MockPackagesTest use a different module location.
 2016-06-27 02:25:32 -07:00
Todd Gamblin
99c3ed56fa Add new sys_type method that prints out the *full* arch descriptor. 2016-06-27 02:19:26 -07:00
Todd Gamblin
305d5698df Rename spack.architecture.sys_type() to spack.architecture.platform() 2016-06-27 02:19:08 -07:00
Todd Gamblin
a15aee5d8e Make MockPackagesTest use a different module location. 
- ensures anything tests create is blown away.
 2016-06-27 01:22:03 -07:00
Todd Gamblin
b4c36164b5 Fixes #760: spack test leaves builtin.mock packages in DB 
- install_layout was redirected by the install test, but not the DB.
- redirect the DB now, as well.
 2016-06-27 00:55:16 -07:00
Todd Gamblin
73213ac59d Merge pull request #984 from epfl-scitas/module_file_explicit_load 
module files : explicit load and mnemonic suffixes
 2016-06-26 23:33:48 -07:00
Todd Gamblin
19b69ce3a5 Merge pull request #1097 from citibeth/efischer/160622-DBErrors 
Improved Spack database errors to help users fix them.
 2016-06-26 22:45:44 -07:00
Todd Gamblin
ece72e5337 Merge pull request #1030 from opoplawski/external 
Remove last two remaining from external imports
 2016-06-26 22:41:58 -07:00
Todd Gamblin
8f28df1d14 Merge pull request #1094 from epfl-scitas/documentation/remove_packages_yaml_inconsistencies 
packages.yaml : removed references to a never implemented feature
 2016-06-26 22:37:43 -07:00
Todd Gamblin
30993357d7 Merge pull request #1105 from adamjstewart/fixes/filter_file 
Fix backup logic in filter_file
 2016-06-26 22:33:09 -07:00
Adam J. Stewart
ea88d9cfe9 Make spack create automatically add dependencies for build system 2016-06-24 16:43:31 -05:00
Todd Gamblin
055f7f4ab6 Add package_dir method to package.py. 2016-06-24 12:33:53 -07:00
Adam J. Stewart
71a297f121 Fix backup logic in filter_file 2016-06-23 16:44:41 -05:00
Todd Gamblin
27e9bc6d02 Make sbang handle lua 
- use --! instead of #! for patched lua scripts.
 2016-06-23 00:03:23 -07:00
Elizabeth Fischer
8f846d507d Added --prefix to module command. 2016-06-22 15:36:04 -04:00
Elizabeth Fischer
10810482bc Update database.py 
PEP8
 2016-06-22 14:03:32 -04:00
Elizabeth Fischer
ffe9e77e36 Improved Spack database errors to help users fix them. 2016-06-22 12:11:09 -04:00
Robert.French
ff3e56cf9a Import which from spack.util.executable; Fixes #1095 2016-06-22 15:25:32 +00:00
alalazo
f29b55957a documentation : removed references to never implemented features 2016-06-22 17:08:02 +02:00
Todd Gamblin
58cff1290d Make environment test less sensitive to user config files. 2016-06-21 00:19:28 -07:00
Todd Gamblin
0521b9bb32 Fix merge error. 2016-06-21 00:08:12 -07:00
Todd Gamblin
f18e1a9371 Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera 2016-06-20 23:53:48 -07:00
Todd Gamblin
3f90fee614 Merge pull request #1085 from NERSC/bugfix/compiler_find 
Bugfix/compiler find and gfortran fix.
 2016-06-20 23:46:13 -07:00
Todd Gamblin
70a25c4587 Change --insensitive to --sensitive in spack list 2016-06-20 17:17:25 -07:00
Todd Gamblin
cbd5a0a6e3 Merge branch 'list-ext' of https://github.com/trws/spack into trws-list-ext 2016-06-20 17:13:32 -07:00
Todd Gamblin
db81a74d66 Merge pull request #939 from davydden/docs/blas_lapack 
document blas and lapack usage in packages
 2016-06-20 17:11:09 -07:00
Todd Gamblin
a3431c5a73 Merge pull request #1047 from epfl-scitas/source_diffs_in_environment_modifications 
feature : construct environment modifications sourcing files
 2016-06-20 16:56:30 -07:00
Mario Melara
d515877d91 Add init_config args in compilers/__init__ 2016-06-20 16:20:52 -07:00
Mario Melara
4c4f3e9747 Add init_config to compiler_find method 2016-06-20 16:20:33 -07:00
alalazo
5aa3131385 qa : fixed flake8 issues 2016-06-20 21:11:33 +02:00
alalazo
b86e3047f3 openmpi : revert part of #1079 (OpenMPI can be built without fortran) 
Building OpenMPI without fortran is possible, and was already handled.
 Raising an install error we effectively renounce at clang+OpenMPI.

 build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found
 2016-06-20 20:46:11 +02:00
Tom Scogland
45482187b4 one more typo issue 2016-06-20 11:42:35 -07:00
Tom Scogland
f6aa864bc4 adding quotes to make sure the glob is interpreted correctly 2016-06-20 11:41:36 -07:00
Tom Scogland
ac728d3e60 fixing capitol->capital typos 2016-06-20 11:38:39 -07:00
Tom Scogland
6180e6c047 automatic case-insensitive like smartsearch, docs 
New documentation for the new options, also case insensitive by default
unless the user includes an upper-case character in their pattern.
 2016-06-20 11:33:56 -07:00
Mario Melara
6fb7b0fcf7 Merge branch 'develop' of https://github.com/LLNL/spack into bugfix/compiler_find 
Forgot to pull branch changes before
 2016-06-20 10:59:28 -07:00
Mario Melara
88888f5ba0 Got rid of unnecessary module arg 2016-06-20 10:58:20 -07:00
Mario Melara
1303b5a6a9 Adding more init_config as args to all_compilers,all_compilers_config, and get_compiler_config 2016-06-20 10:57:58 -07:00
Mario Melara
fe30113502 Adding init_config back. Don't initalize config rather let compiler_find do all the work. spack compiler list and spack compilers can do the work 2016-06-20 10:57:10 -07:00
Tom Scogland
0377f3580b switching argument naming 2016-06-20 10:53:19 -07:00
Adam J. Stewart
aa86488fd9 Flake8 2016-06-20 12:47:17 -05:00
Todd Gamblin
42ff1aaa75 Merge pull request #1064 from LLNL/bugfix/github-1043-script-backup 
do not create shebang.bak file
 2016-06-20 10:45:42 -07:00
Todd Gamblin
c09111bbef Merge pull request #1053 from davydden/pkg/dealii_suite_update 
update Petsc, Slepc, Trilinos, Superlu-dist and deal.II
 2016-06-20 10:32:52 -07:00
Adam J. Stewart
be407f531e Move around extension logic 2016-06-20 12:24:45 -05:00
Adam J. Stewart
28b2e36230 Add ctest executable 2016-06-20 12:24:45 -05:00
Adam J. Stewart
afff40e584 Flake8 fix for R templates 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5dfc2052bd Flake8 change 2016-06-20 12:24:45 -05:00
Adam J. Stewart
98d03c74e1 Add support for less common compression schemes 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5a55bb3f8d Modify R installation template 2016-06-20 12:24:45 -05:00
Adam J. Stewart
79fae306f6 Add extensions for Python/R and more configurable install 2016-06-20 12:24:45 -05:00
Adam J. Stewart
9500f2718b More Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
a21e845ce7 Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
2220784eda Add scons support, .zip support, and Cantera package 2016-06-20 12:24:45 -05:00
Peter Scheibel
1dc62e8a19 Merge branch 'develop' into features/cache-archives 2016-06-20 10:16:02 -07:00
Todd Gamblin
ce105e9bbe Merge branch 'bugfix/compiler_find' into develop 2016-06-20 09:34:25 -07:00
Todd Gamblin
84e21703bd Test no longer assumes compilers exist in /usr. 
- makes a fake gcc instead, and tests that.
 2016-06-20 09:28:39 -07:00
Mario Melara
64c83638ff Adding test to list of test_names 2016-06-18 11:11:46 -07:00
Mario Melara
15e6b88a8b Adding new tests for compiler command for spack's test suite 2016-06-18 10:51:38 -07:00
Mario Melara
36275f8e6e More clean up of init_config, also no need for a different find_compilers function. 2016-06-18 10:50:55 -07:00
Mario Melara
ccb62b4620 Getting rid of no longer used init_config arg 2016-06-18 10:49:39 -07:00
Todd Gamblin
f9efb746d7 Merge pull request #1032 from eschnett/eschnett/cc-quotes 
Add quotes around file name
 2016-06-18 08:57:18 -07:00
alalazo
9e0c20c794 environment : filter the current environment 
Previously only the environment obtained after sourcing the file was filtered.
This caused the appeareance of spurious unset commands in the list.
 2016-06-18 13:39:08 +02:00
alalazo
a17d1efe7c Merge branch 'develop' of https://github.com/LLNL/spack into features/source_diffs_in_environment_modifications 
Conflicts:
	lib/spack/spack/test/environment.py
 2016-06-18 13:31:29 +02:00
alalazo
670669ef80 qa : fixed flake8 issues 2016-06-18 13:10:35 +02:00
alalazo
a33077b77f unit tests : fixed test_alter_environment 2016-06-18 13:07:14 +02:00
alalazo
51cf847647 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_file_explicit_load 
Conflicts:
	lib/spack/spack/test/modules.py
 2016-06-18 13:06:37 +02:00
Mario Melara
8af1c5fc8f Merge remote-tracking branch 'upstream/develop' into develop 
"Updating NERSC branch"
 2016-06-18 00:52:06 -07:00
Mario Melara
c703bfb54d Got rid of init_config flag since we don't need it. Instead we update the cache config if there are any changes 2016-06-18 00:48:08 -07:00
Todd Gamblin
4569df025e Merge pull request #1060 from mathstuf/no-break-long-words 
tty: do not break long words
 2016-06-17 14:51:26 -07:00
Todd Gamblin
d7f48e1ff0 Merge pull request #1061 from mathstuf/reindex-preserve-explicit 
reindex: preserve 'explicit' flags
 2016-06-17 14:29:47 -07:00
Todd Gamblin
0bbbfc2ef7 Merge pull request #946 from LLNL/features/intel2 
Intel software packages and license enhancements
 2016-06-17 14:28:39 -07:00
Tom Scogland
8770f2a0ea fixing last flake8 issue 2016-06-17 13:42:27 -07:00
Tom Scogland
0743ef4d0b fixing flake8 issues 2016-06-17 13:32:28 -07:00
Tom Scogland
a4ac99877a cmd/list: adding description search and glob by default 2016-06-17 12:00:35 -07:00
Mario Melara
fe5eec5230 'find and 'add' are options for adding compilers via command line 2016-06-17 09:16:03 -07:00
Mario Melara
df84fe0b58 Added init_config parameter so we don't initialize the config when user runs spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter. 2016-06-16 18:10:38 -07:00
Todd Gamblin
005827ab23 Replace 2.6-incompatible skipIf with a conditional. 
- skipIf doesn't work with Python 2.6.
 2016-06-16 12:12:29 -07:00
Todd Gamblin
f60ae61652 remove dead code, cleanup. 2016-06-16 10:44:15 -07:00
Todd Gamblin
8867adf942 simplify instance check. 2016-06-16 10:43:36 -07:00
Todd Gamblin
c7dfa1699a rename Mac OS X to macos 2016-06-16 10:43:12 -07:00
Mario Melara
6b03770602 Added str method to mac_osx so that whenever we try to access darwins different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not. 2016-06-16 09:44:37 -07:00
Todd Gamblin
88b73bacdb Merge branch 'features/newarch' into develop 
Conflicts:
	lib/spack/spack/config.py
	var/spack/repos/builtin/packages/lua/package.py
 2016-06-16 03:03:26 -07:00
Todd Gamblin
17b868381f Fixes #460: Do not show variants by default in spack find. 
This does two things:

1. By default `spack find` no longer shows variants.  You have to
   supply `-v` to get that

2. This improves the `colify` implementation so that it no longer pads
   the rightmost column.  This avoids the issue where if one spec was
   too long in the output, *all* specs would have space padding added
   to that width, and it would look like the output of `spack find`
   was double spaced.  This no longer happens -- the one bad line
   wraps around and the other lines are now single-spaced when you use
   `-v` with boost.
 2016-06-16 02:55:33 -07:00
Todd Gamblin
88b671f8b1 Just call old os "unknown" 2016-06-16 02:06:19 -07:00
Todd Gamblin
f3d6818d5c be more tolerant when parsing new specs. 2016-06-16 00:55:39 -07:00
Todd Gamblin
c90cc465f5 Add __contains__ to arch to satsify old packages. 2016-06-16 00:54:59 -07:00
Gregory L. Lee
d4df4375d5 removed unused import per flake8 report 2016-06-15 20:32:08 -07:00
Gregory L. Lee
1724ff5658 do not create shebang.bak file 2016-06-15 20:21:02 -07:00
Gregory Becker
3fcd54203c two minor fixes 2016-06-15 16:44:38 -07:00
Gregory Becker
2fc9ac4036 Two minor fixes 2016-06-15 16:39:39 -07:00
Ben Boeckel
716f12dd58 reindex: preserve 'explicit' flags 
Look up in the old database whether the spec was explicit or not and
preserve it into the new database.

Fixes #1050.
 2016-06-15 12:48:40 -04:00
Denis Davydov
3d3a26cd9a flake8 fixes for filesystem.py 2016-06-15 18:31:10 +02:00
Ben Boeckel
36decbfa69 tty: do not break long words 
These "words" tend to be file paths which are best left unbroken.

Fixes #1057.
 2016-06-15 12:22:35 -04:00
Denis Davydov
a860a3d614 superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version 2016-06-15 18:21:13 +02:00
Massimiliano Culpo
30c9d976f6 environment : added more logic to treat append and prepend path 2016-06-12 18:54:56 +02:00
alalazo
5300ffac7f qa : fixed flak8 checks 2016-06-12 15:11:26 +02:00
alalazo
a6681f2d7f environment modules : added function to construct them from source files 2016-06-12 15:06:17 +02:00
alalazo
3737169450 qa : fixed style and a bug reported by flake8 
lib/spack/spack/test/versions.py:313: [F811] redefinition of unused 'test_union_with_containment' from line 306
Flake8 found errors.
 2016-06-11 12:57:46 +02:00
alalazo
eb9b00b210 versions : added unit tests for the new properties 2016-06-11 12:44:21 +02:00
Gregory Becker
0fea167f97 I made a hash of that minor merge 
Merge commit '4eeb' into features/newarch
 2016-06-10 16:28:09 -07:00
Gregory Becker
992bcac794 changed compiler yaml format 2016-06-10 16:26:02 -07:00
Erik Schnetter
2a4d440003 Add quotes around file name 
$input_log will expand to file names with special characters (e.g. "@"), thus bash requires quotes.
 2016-06-08 19:14:01 -04:00
Orion Poplawski
7ce08c4216 Remove last two remaining from external imports 2016-06-08 13:51:31 -06:00
Peter Scheibel
3b71d78f3c rename URLMirrorFetchStrategy to CacheURLFetchStrategy since it isnt used to manage all mirror URLs - just the cache (the specific behavior that a URL may refer to a stale resource doesn't necessarily apply to mirrors) 2016-06-08 09:57:56 -07:00
alalazo
564483936f qa : fixed flake8 issues 2016-06-08 16:33:49 +02:00
alalazo
f4a39457de lmod : updated package and dependencies 2016-06-08 15:35:15 +02:00
Peter Scheibel
a2754894ea (1) FsCache store now takes a fetcher vs. just a copy command (2) use [1] to conditionally cache resource: only save it if there is a feature which identifies it uniquely (for example do not cache a repository if it pulls the latest state vs. a particular tag/commit) 2016-06-07 16:26:54 -07:00
Mario Melara
5715799d4e Added to_dict back into operating system 2016-06-07 14:15:28 -07:00
Mario Melara
4925be0bc4 Load external modules 2016-06-07 13:22:47 -07:00
Peter Scheibel
de1ec4be8b change source archive caching to omit digest from name and instead calculate and compare the checksum. This achieves the original goal of discarding stale cache files without preserving multiple files for the same version. 2016-06-06 12:26:13 -07:00
Mario Melara
196737c217 Changed to passing full architecture spec to function rather than just platform_os so we can grab the operating system from the platform getters 2016-06-06 10:29:19 -07:00
Mario Melara
835982faed Changed OS name to CNL10 so that we properly find the compilers for the test platform 2016-06-06 09:08:59 -07:00
Mario Melara
864191b6ed Got rid of unnecessary global keyword 2016-06-06 09:06:58 -07:00
Mario Melara
5b023bb0a1 Passing through full arch instead of just operating sysystem so that we can use the platform to get the operating system 2016-06-06 09:05:14 -07:00
Mario Melara
c7b48f6fef Passing full arch for proper compiler spec so that we can use the platform to get the operating system 2016-06-06 09:04:24 -07:00
Mario Melara
f751d68177 Passing architecture to functions to find compiler. We can use the platform name if provided to find the operating system. Also changed error to operating system instead of target since operating system is now in charge of compiler finding. 2016-06-06 09:03:32 -07:00
Tom Scogland
30e8e77fb6 Merge pull request #869 from brettviren/feature/views 
Feature/views
 2016-06-05 11:31:48 -07:00
alalazo
bdd874eb7f autopep8 2016-06-04 18:09:28 +02:00
alalazo
02cadb882b unit test : suffixes 2016-06-04 18:09:06 +02:00
alalazo
669caefccb unit test : wrong naming scheme in conflict 2016-06-04 18:00:18 +02:00
alalazo
d43cfefa43 autopep8 2016-06-04 17:24:52 +02:00
alalazo
2d6db06fca unit test : prerequisites 2016-06-04 17:24:27 +02:00
alalazo
ffa6fed3a3 unit test : custom module file load 2016-06-04 17:20:06 +02:00
alalazo
422d3d4db6 unit test : write a whitelisted module 2016-06-04 16:46:15 +02:00
alalazo
09b1daa7b9 unit test : write a blacklisted module 2016-06-04 16:23:41 +02:00
alalazo
408aa10210 unit test : whitelist 2016-06-04 16:18:15 +02:00
alalazo
a3f39c2315 autopep8 : fixed style issues 2016-06-04 11:23:23 +02:00
alalazo
97e2834816 unit test : wrong tag for dependencies 2016-06-04 11:20:35 +02:00
alalazo
2207ab8f23 unit test : inspect_path 2016-06-04 10:44:37 +02:00
alalazo
0e71b5dde8 unit test : update dictionary extending lists 2016-06-04 10:07:13 +02:00
Mario Melara
30c204a0a5 Made a merge commit earlier with Todd fixing all_platforms, but changed how architecture looks in spec.yaml. Just three strings. Also made some flake8 formatting changes 2016-06-03 16:16:59 -07:00
Mario Melara
bc557cc765 Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-06-03 15:59:00 -07:00
Mario Melara
24d160e93e Changed how architecture looks like in spec.yaml. Now it's only three strings, platform, os, target in spec.yaml. Also did some flake8 formatting changes 2016-06-03 15:57:54 -07:00
Todd Gamblin
9d04dccb79 Update version to correspond to master. 2016-06-02 01:20:40 -07:00
Gregory Becker
817f43f927 Fixed config format to allow default compiler flags 2016-05-31 13:39:25 -07:00
Todd Gamblin
7bdf63a0fa Fix some bugs in architecture. 2016-05-31 03:01:05 -07:00
Todd Gamblin
24ee32d7b0 More flexible reading of specs from DB, formatting. 2016-05-30 22:02:22 -07:00
Todd Gamblin
f3f0122f11 Merge branch 'develop' into features/newarch 2016-05-30 13:54:53 -07:00
Mario Melara
b14ba31250 Quick fix for mock compilers.yaml to work on linux machines. 2016-05-30 13:22:08 -07:00
Mario Melara
716991775d Added extra check on linux machines, since most linux machines don't have module system 2016-05-30 13:09:41 -07:00
Mario Melara
08a9d80ebc Changed platform to py_platform to avoid name collisions. The naming collisions resulted in an error on linux machines 2016-05-30 13:07:20 -07:00
Mario Melara
f96c979024 Added a conditional to check if package is external 2016-05-30 13:05:49 -07:00
Todd Gamblin
e8b4d5fb6f Performance boost: reduce instantiations of re.Scanner 
- Lexer is the same for every Spec parser in spack, so don't build it
  every time.

- This improves time to import package.py files a lot, as a Lexer
  doesn't have to be constructed for every spc in the packages.

- To concretize dealii:
  - Before: ~20 sec
  - After:  ~6 sec
 2016-05-28 23:05:23 -07:00
Mario Melara
22ca72e7b9 Added conditional skipIf to test_external_modules, darwin machines don't have tcl modules so skip this test and let user know why 2016-05-28 12:40:29 -07:00
Mario Melara
69585cb6e3 Added elcap compilers 2016-05-28 12:39:43 -07:00
Mario Melara
f0a9c45207 Adding external to mock config 2016-05-28 10:13:57 -07:00
Mario Melara
98a4a9f2cc Adding test for external modules 2016-05-28 10:13:22 -07:00
Mario Melara
becec8ac7e Added external module check in normalize to avoid infinite loop 2016-05-28 10:12:53 -07:00
Gregory Becker
9dad7c2ace re-merged mainline develop 2016-05-27 13:13:19 -07:00
Gregory Becker
f49644cdea Fixed typo in linux platform 2016-05-27 12:37:58 -07:00
Gregory Becker
023504ed64 Fixed the external modules bug 2016-05-27 12:26:59 -07:00
Todd Gamblin
285646bbfa Merge pull request #981 from epfl-scitas/tests/unit_test_for_968 
find : add unit tests
 2016-05-27 11:00:45 -05:00
Todd Gamblin
2f18a34458 Merge pull request #989 from LLNL/features/cflags-documentation 
updated documentation for cflags PR
 2016-05-27 10:59:40 -05:00
Gregory Becker
a2f90453f4 Fixed backwards compatibility for compilers.yaml config file 2016-05-26 20:30:05 -07:00
Mario Melara
9c1da4fa4c Corrected parantheses wrapping 2016-05-26 13:58:17 -07:00
Gregory Becker
189e8b3f34 fixed compiler config init logic 2016-05-26 13:17:01 -07:00
Gregory Becker
88bec814eb Allow 'arch=' syntax for specs to allow copying from output 2016-05-26 12:10:41 -07:00
Gregory Becker
c0661744cc fixed compatibility work 2016-05-26 11:38:40 -07:00
Gregory Becker
b968603a57 made yaml format backwards compatible 2016-05-26 11:14:05 -07:00
Mario Melara
3b675d8b70 Changed comparison operator so that we don't get caught in an infinite loop 2016-05-26 11:09:14 -07:00
Gregory Becker
c30fe932d9 fixed mock config to use truncated versions of linux distro versions 2016-05-25 16:34:45 -07:00
Gregory Becker
8f99334f11 Fixed test config to work on yosemite 2016-05-25 16:06:14 -07:00
Todd Gamblin
76d42b5200 Merge pull request #982 from trws/rust 
Rust
 2016-05-25 15:15:51 -05:00
Gregory Becker
0f40174723 added test platform 2016-05-25 12:28:59 -07:00
Gregory Becker
3a68dd2011 (hopefully) final fixes of the merge 2016-05-25 12:22:16 -07:00
Gregory Becker
74dc7ffe4d updated documentation for cflags PR 2016-05-25 10:56:12 -07:00
Peter Scheibel
dd26c0bbcc merge from develop 2016-05-24 18:56:44 -07:00
alalazo
84707ed926 modules : it's possible to add suffixes to module files based on constraint 2016-05-24 15:23:52 +02:00
Gregory Becker
513aae5ef8 fixed bug where earlier test was blowing away environment, causing an error on which('modulecmd') 2016-05-23 17:39:06 -07:00
Gregory Becker
1da6bbd146 Fixed a couple more bugs 2016-05-23 17:25:54 -07:00
Gregory Becker
d438ea0880 'Ugly merge because I mishandled git 
Merge branch 'save' into features/newarch
 2016-05-23 16:57:54 -07:00
Gregory Becker
d7612e7aaa Fixed errors caught by spec and concretize tests 2016-05-23 16:54:41 -07:00
Mario Melara
6c352132d0 Started writing documentation for architecture. Might need a couple more drafts 2016-05-23 14:28:00 -07:00
alalazo
0890ac4507 modules : explicit module file load from configuration files 2016-05-23 10:54:48 +02:00
Todd Gamblin
3ab56a188e Fixes #980: really slow spack spec performance 
- `spack spec dealii` now takse seconds rather than 18 minutes.

- Slow hash (`dag_hash`) was accidentally inserted into the fast hash
  (`__hash__`).

- Do not put the slow hash in the fast hash.
 2016-05-22 18:33:13 -07:00
Tom Scogland
9bd4bc02d6 fixing warning for package fetch 2016-05-22 11:16:00 -07:00
Todd Gamblin
d087086581 update documentation. 2016-05-21 14:33:05 -07:00
Mario Melara
c3767d593d compiler list is sorted in descending order, in order to get most up to date version we check from the beginning of the list 2016-05-20 15:48:13 -07:00
alalazo
7303c387e8 autopep8 : fixed style 2016-05-20 10:34:11 +02:00
alalazo
b485ca8198 find : added unit tests, exits with 1 if -E and -e are given 2016-05-20 10:32:46 +02:00
Mario Melara
175a042fd3 Changed rpaths method so that it only grabs rpaths using the compiler module name instead of PrgEnv-x module name 2016-05-19 16:42:13 -07:00
Mario Melara
36450b9bc9 Adding link_paths to craype compilers 2016-05-19 14:25:50 -07:00
Gregory Becker
19c8a52fe1 fixed spec syntax test 2016-05-19 09:53:49 -07:00
Brett Viren
126fc10b9d Remove view print for now. 2016-05-19 08:36:18 -06:00
Gregory Becker
63459ab0c7 Fixed some of the bugs 2016-05-18 18:21:52 -07:00
Gregory Becker
01d5ffcd87 Fixed the first set of merge bugs 2016-05-18 17:42:11 -07:00
Mario Melara
16431f7a4c Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-05-18 17:26:30 -07:00
Mario Melara
b25da51638 Changed unsatisfiable architecture test 2016-05-18 17:26:06 -07:00
Mario Melara
6926f4d0da Changed arch tests to new spec target= os= 2016-05-18 17:23:10 -07:00
Gregory Becker
5417f1cdc6 more merge work 2016-05-18 17:21:03 -07:00
Gregory Becker
b1e5eafb80 more merge work 2016-05-18 17:18:26 -07:00
Gregory Becker
deb5011d08 more merge work 2016-05-18 17:14:16 -07:00
Mario Melara
b4b7942230 Moved searching of flags into get compilers in compilers_for_spec 2016-05-18 17:07:23 -07:00
Mario Melara
9f8ff32bcc Got rid of ifdefs, changed parameters for Compiler: added kwargs 2016-05-18 17:05:11 -07:00
Mario Melara
faa0f2a13c got rid of ifdef 2016-05-18 17:01:59 -07:00
Gregory Becker
80310a3b7c Finished merge on these files 2016-05-18 16:50:50 -07:00
Gregory Becker
9f59c128be Partial merge of mainline develop 2016-05-18 15:13:40 -07:00
Tom Scogland
a1f8cc2817 peren-nesting fix in spec 2016-05-18 14:24:16 -07:00
Tom Scogland
29635b7bbd initial docs for find and flake8 cleanup 2016-05-18 14:04:39 -07:00
alalazo
23c7089789 fixes #967, flake8 approved 2016-05-18 11:52:27 +02:00
alalazo
fcc30cbf30 fixes #967 2016-05-18 11:48:03 +02:00
Todd Gamblin
502420ceff Merge branch 'features/cflags' into develop 
Conflicts:
	lib/spack/spack/cmd/find.py
	var/spack/repos/builtin/packages/ghostscript/package.py
 2016-05-17 16:44:54 -07:00
Todd Gamblin
9d584d0c47 Tag Spack version 0.9 
- Tagging a version to include all that's happened since 0.8.17

- This is in anticipation of merging `features/cflags` and
  `features/newarch`, which will break the spec format.

- 1.0 will likely come after those.
 2016-05-17 16:06:43 -07:00
Todd Gamblin
15e9d5f96e Merge pull request #868 from trws/explicitly-installed 
track whether a package was installed "explicitly"
 2016-05-17 14:28:17 -07:00
Todd Gamblin
138307dd0c Merge pull request #955 from trws/lua-rework 
complete lua rework
 2016-05-17 13:21:51 -07:00
Erik Schnetter
fcc4c1b2f2 Remove duplicate providers that can concretize to the same result 
Patch generously provided by @becker33.

Closes #928.
 2016-05-17 15:13:28 -04:00
Gregory Becker
0fd9cdb861 Fixed config tests for new compiler config format 2016-05-16 09:56:07 -07:00
Gregory Becker
7705603f73 Added more compilers to mock packages tests 2016-05-16 09:43:46 -07:00
Tom Scogland
8859a09cd2 handle explicit when requesting to install already installed packages 2016-05-16 08:08:40 -07:00
Tom Scogland
4acdfeae61 track whether a package was installed "explicitly" 
Adds a new attribute in the database to track whether a package was
installed explicitly or not, where explicitly is the user running `spack
install <package>` and implicitly is it being installed as a dependency.
It also adds arguments to `spack find` to find these packages such that
it should be possible to query the packages that were installed
implicitly and are not currently depended upon any longer.
 2016-05-16 08:08:40 -07:00
Brett Viren
1bbe6409e1 Merge remote-tracking branch 'upstream/develop' into view-fix-merge 2016-05-16 10:09:31 -04:00
Brett Viren
77a34ebdf9 flake8-clean. 2016-05-16 10:08:59 -04:00
Tom Scogland
dacedfcc0e formatting to appease flake8 2016-05-16 05:12:30 -07:00
Tom Scogland
c6524d0311 environment: fixed comment and default separator 2016-05-15 09:50:21 -07:00
Tom Scogland
577657b3f7 go rework 
This commit includes:
* a new go package that uses gccgo to bootstrap the go toolchain
* env support added to Executable
* a new Go fetch strategy that uses `go get` to fetch a package and all
  of its deps
* A platinum searcher package that leverages the new go package and
  fetch strategy
 2016-05-14 22:35:55 -07:00
Tom Scogland
a2197f3a41 yet more sacrifices to the god of short-lines 2016-05-14 17:51:58 -07:00
Tom Scogland
df30182a10 appeasing flake8 in environment 2016-05-14 17:39:59 -07:00
Tom Scogland
12e36ee0e7 fix merge error 2016-05-14 16:20:45 -07:00
Tom Scogland
b5979b13e3 complete lua rework, also module path fix 
This is a complete rework of the lua package, it also allows the
environment modification classes to handle paths that are not separated
by colons, and uses the support for same in TCL modules as well.

The biggest difference is the handling for lua extension packages, which
now have their paths set correctly by the lua parent package, and have
access to both lua and luarocks as installation tools. See the luaposix
package for what should be required for most lua packages after this.
 2016-05-14 16:18:26 -07:00
Elizabeth Fischer
efa506b235 Preparing spack setup command for merge. Try this out for a while... 2016-05-14 17:09:11 -04:00
Brett Viren
b3ede099e2 Document command. 2016-05-14 13:15:25 -04:00
Brett Viren
c98afe2205 Pick a better name for the 'spec' parameters. 2016-05-14 13:14:51 -04:00
Brett Viren
8ddc1f8977 Move from str.format() to string.Template. 2016-05-14 09:11:04 -04:00
Gregory L. Lee
e9b71872a8 addressed PR#946 comments from @adamjstewart 2016-05-13 15:16:07 -07:00
Mario Melara
fce6ecb05c Changed _proper_compiler_spec to return filtered list. Apparently filter returns a list rather than filtering the original list. Lead to compiler finding problems if user specified frontend compilers 2016-05-13 15:04:06 -07:00
Gregory Becker
f43cab0951 fixed pkgconfig issue 2016-05-13 14:39:20 -07:00
Gregory L. Lee
b8a91db089 Intel software packages and license enhancements 2016-05-12 20:04:45 -07:00
Gregory Becker
4c9dd028d2 Fixed error causing hang in env/cc 2016-05-12 17:20:48 -07:00
Todd Gamblin
5e13bba068 Fix #941: add copyright to new package files. 
- also reworded the boilerplate a bit.
 2016-05-12 10:30:13 -07:00
Denis Davydov
68c681bb78 document blas and lapack usage in packages 2016-05-12 08:59:17 +02:00
Todd Gamblin
e7ced54369 Correct LLNL LGPL license template for clarity. 2016-05-11 21:22:25 -07:00
Todd Gamblin
14fe0b8ad2 Merge pull request #558 from adamjstewart/features/pgi 
Add Licensed Software Support
 2016-05-11 17:17:47 -07:00
Gregory Becker
45bf93405a Changed spec syntax for new parts from modules feature 2016-05-11 16:23:13 -07:00
Gregory Becker
2e1810e3a7 re-merging develop 2016-05-11 15:26:09 -07:00
Gregory Becker
566fec4015 Fixed variants in new format and removed print statements from debugging 2016-05-11 14:56:41 -07:00
Gregory Becker
0b5836cfce Fixed flipped conditional in satisfies 2016-05-11 10:51:52 -07:00
Adam J. Stewart
c043275f1b Final flake8 changes 2016-05-11 11:46:41 -05:00
Todd Gamblin
9cf5404bb7 Merge pull request #937 from davydden/features/unit_tests 
Features/package_test
 2016-05-11 09:42:00 -07:00
Adam J. Stewart
5879f8207f Flake8 formatting changes 2016-05-11 11:32:08 -05:00
Adam J. Stewart
ee7ec4fa66 Move all licensing support to pre/post_install hooks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
19f4b27fd2 Add documentation for packaging of licensed software 2016-05-11 11:32:08 -05:00
Adam J. Stewart
8bcb812529 Allow multiple license symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
2a11cb8b76 Use global licenses with local symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
6906911e85 Allow license files to use different symbols for comments 2016-05-11 11:32:08 -05:00
Adam J. Stewart
b63d11d5b0 Formatting consistency 2016-05-11 11:32:07 -05:00
Adam J. Stewart
5cb45c253e Bug fix 2016-05-11 11:32:07 -05:00
Adam J. Stewart
1b997f10a8 Add set_up_license function 2016-05-11 11:32:07 -05:00
Adam J. Stewart
8cba8d6d1d Add default global variables for licensing information 2016-05-11 11:29:30 -05:00
Todd Gamblin
fd5d89b61c Merge branch 'custom_modulefiles_from_config' of https://github.com/epfl-scitas/spack into epfl-scitas-custom_modulefiles_from_config 2016-05-11 08:59:23 -07:00
alalazo
bb4b6c8ee2 flake 8 : fixed checks 2016-05-11 17:02:36 +02:00
Denis Davydov
eba264fcd0 fix formatting 2016-05-11 16:11:34 +02:00
alalazo
78ae5d7723 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 
Conflicts:
	lib/spack/spack/config.py
 2016-05-11 16:11:19 +02:00
alalazo
22bb0562fe Revert "flake8 : fixed all issues?" 
This reverts commit 71e49e289a.
 2016-05-11 16:09:47 +02:00
alalazo
b215b19cae modules : added docs 2016-05-11 15:42:48 +02:00
Denis Davydov
809ded74c9 add functions for simple unit tests; refactor openblas to use them 2016-05-11 15:10:13 +02:00
Benedikt Hegner
0b7b25487f improve error message for wrong config section names 2016-05-11 13:29:27 +02:00
Todd Gamblin
6d6eb0f2d1 Remove config.py from flake checking for now. 2016-05-11 02:32:13 -07:00
Todd Gamblin
fc8d18ebdc Merge branch 'bugfix/config' of git://github.com/hegner/spack into hegner-bugfix/config 2016-05-11 02:31:20 -07:00
Todd Gamblin
9030541e4b Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages 
QA : make qa checking less painful
 2016-05-11 02:26:07 -07:00
Benedikt Hegner
c1e6b52184 first round of coding rules 2016-05-11 00:28:12 +02:00
Benedikt Hegner
05b6c3f8cf add test for list parameters 2016-05-11 00:14:24 +02:00
Benedikt Hegner
6e462abb4d hmm... test before commit 2016-05-10 23:31:29 +02:00
Benedikt Hegner
5d477bc956 fix setting config for list parameters 2016-05-10 23:19:30 +02:00
Todd Gamblin
98faee1d5c Minor tweaks to flock docs. 2016-05-10 11:19:17 -07:00
Todd Gamblin
a49662276d Merge branch 'fix-doc-flock' of git://github.com/luca-heltai/spack into luca-heltai-fix-doc-flock 2016-05-10 11:10:07 -07:00
Luca Heltai
4cb91d6f7b Added documentation on lockf/flock. 2016-05-10 19:46:24 +02:00
alalazo
7d74e209f3 qa : this should still fail due to F821 2016-05-10 19:20:26 +02:00
alalazo
979b53cab6 qa : modifying 2 packages and a framework file just for the sake of it 2016-05-10 18:33:07 +02:00
alalazo
71e49e289a flake8 : fixed all issues? 2016-05-10 17:19:22 +02:00
alalazo
c3f3f26632 modules : added warning if a user tries to add prerequisite with dotkit 2016-05-10 16:16:50 +02:00
alalazo
0b7c673205 modules : changed syntax for environment modifications 2016-05-10 15:48:37 +02:00
alalazo
f8f71b1c2c modules : prefix_inspections moved to modules.yaml 2016-05-10 13:37:03 +02:00
alalazo
9eee71edf7 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-05-10 11:13:19 +02:00
Todd Gamblin
42edb6840e Merge pull request #905 from adamjstewart/features/rpath_flag 
Allow compilers to specify their own rpath linking flags
 2016-05-10 01:56:49 -07:00
Todd Gamblin
a2528a86b4 Merge pull request #692 from mathstuf/quoted-command-lines 
executable: quote arguments
 2016-05-10 01:42:26 -07:00
Todd Gamblin
8ce45d2161 Merge pull request #775 from epfl-scitas/fixes/config_update 
fix: proper update of config file
 2016-05-10 01:35:56 -07:00
Todd Gamblin
57e495943f Merge pull request #757 from glennpj/extend_r 
Make R extendable
 2016-05-10 01:30:13 -07:00
Todd Gamblin
69f6baf28e Merge pull request #842 from hegner/compiler_lookup_order 
Bugfix - preserve lookup order in PATH when invoking 'spack compiler add'
 2016-05-10 01:11:18 -07:00
Todd Gamblin
cbfba84aa2 Merge pull request #849 from brettviren/bugfix/share-pkgconfig 
Add  to sub dirs checked for pkg-config files.
 2016-05-10 00:59:01 -07:00
Gregory Becker
c6ac709d70 WIP fixing all the things that broke when I changed the anonymous spec names 2016-05-09 17:06:21 -07:00
Gregory Becker
a7026da45c cleanup 2016-05-09 16:24:26 -07:00
Gregory Becker
222c84d9be Changed anonymous specs to have name=None instead of empty string 2016-05-09 16:22:17 -07:00
Adam J. Stewart
6665a996e6 Add documentation for rpath_flag handling 2016-05-09 17:04:14 -05:00
Adam J. Stewart
58733eb26a Comment change 2016-05-09 16:59:39 -05:00
Adam J. Stewart
b211829fb1 Testing typo 2016-05-09 16:59:39 -05:00
Adam J. Stewart
4473311bdb Allow compilers to specify their own rpath linking flags 2016-05-09 16:59:39 -05:00
Denis Davydov
7a2d65967c wrap tty.die to 80 chars 2016-05-09 22:04:34 +02:00
Todd Gamblin
73107d6b0f cleanup 2016-05-09 03:40:34 -07:00
Todd Gamblin
0c853ac3ea Make _hash private to discourage access; fix dag_hash length handling. 2016-05-09 03:39:08 -07:00
Todd Gamblin
7151fd8836 Restore cc from mainline; clean up some cflags stuff. 2016-05-09 03:37:27 -07:00
Brett Viren
f1900f6a7b Add a 'print' view allowing genreation of arbitrary strings based on format using package/spec parameters. 2016-05-08 10:25:21 -04:00
Brett Viren
2d1430da13 Address all coments in @trws's latest comment in PR #869. 
I addressed them by factoring the code better to follow the visitor
pattern.  This will allow actions to be easily added in the future.
These may not even be file sytsem views.  One could add actions to
generate shell init scripts, JSON DAG-dumpers, GraphViz DOT file
generators, etc (yes, some of these are alread in there - just to give
the idea).

Also added is a top-level test

 $ source share/spack/setup-env.sh
 $ ./share/spack/examples/test_view.sh

Read the top of that script first.
 2016-05-07 18:24:24 -04:00
Gregory Becker
d392056457 Cleaning up print statements for debugging 2016-05-06 18:05:30 -07:00
Gregory Becker
1523ebe9f7 Working properly to display but not reuse old specs from yaml 2016-05-06 18:03:43 -07:00
Gregory Becker
06b9433351 Fixed previous commit 2016-05-06 12:35:43 -07:00
Gregory Becker
bc087cfefb Fixed database to account for hashes when reading install records 2016-05-06 12:28:46 -07:00
Gregory Becker
9f37e4c907 Made spec hashes immutable once concrete -- improved 2016-05-06 12:05:51 -07:00
Gregory Becker
addcde4f35 Made spec hashes immutable once concrete 2016-05-06 12:05:27 -07:00
Gregory Becker
2f821b9e9b temp 2016-05-05 18:13:56 -07:00
Gregory Becker
9a39ccea8f Every old spec has empty compiler flags 2016-05-05 17:49:30 -07:00
Gregory Becker
1bb7bfaf7f Versioning the database -- automatic reindex 2016-05-05 17:38:51 -07:00
Gregory Becker
3fc1344865 temp 2016-05-05 17:11:09 -07:00
Gregory Becker
11b62114bb versioning the database 2016-05-05 16:58:00 -07:00
Elizabeth Fischer
6a48385111 Keep users environment in the spack setup script (spconfig.py). This is important to avoid breaking things that require module loads to work; for example, non-activate Python packages. 2016-05-05 17:48:24 -04:00
Todd Gamblin
9fb1a9537d Merge branch 'develop' into features/cflags 2016-05-05 10:49:15 -07:00
Denis Davydov
c37ea9aff5 document usage of compiler flags properties 2016-05-05 11:56:58 +02:00
Denis Davydov
f84f04591b substitute cxx14_flag by a property with the same name to be overridden in derived classes 2016-05-05 10:48:31 +02:00
Denis Davydov
c6fb6bde40 remove cxx11_flag from Compiler as it is now substituted by a property with the same name 2016-05-05 10:47:02 +02:00
Denis Davydov
ddcb97f953 add a temporary Nag.cxx11_flag property 2016-05-05 10:44:41 +02:00
Denis Davydov
473a5542be compiler: make default openmp_flag() and cxx11_flag() die when these properties are not implemented in a derived class 2016-05-05 10:44:41 +02:00
Denis Davydov
30b65d3114 fix comment in Compiler class 2016-05-05 10:44:41 +02:00
Denis Davydov
e28ca3922f compiler: cleanup Nag.cxx11_flag and Pgi.cxx11_flag 2016-05-05 10:44:41 +02:00
Denis Davydov
d5a760776a compiler: add default implementation of openmp_flag() and css11_flag() 2016-05-05 10:44:41 +02:00
Denis Davydov
6a418cfb8d compiler: simplify Clang.is_apple 2016-05-05 10:44:41 +02:00
Denis Davydov
f2f1c49c90 compilers: one more missing import statement 2016-05-05 10:44:41 +02:00
Denis Davydov
07fd0ccc9a compiler: add Clang.is_apple property which checks if Clang is from Apple or not using version 2016-05-05 10:44:41 +02:00
Denis Davydov
592045cd54 compilers: make Intel::openmp_flag() return -openmp and -qopenmp based on the compiler version 2016-05-05 10:44:41 +02:00
Denis Davydov
3cd3052c56 compilers: minor fixes to Clang::cxx11_flag() and Clang::openmp_flag() 2016-05-05 10:44:41 +02:00
Denis Davydov
c078deaab1 compilers: add missing import statements 2016-05-05 10:44:41 +02:00
Denis Davydov
9776dc0433 compilers: add openmp_flag() method 2016-05-05 10:44:41 +02:00
Denis Davydov
2cdfe14e5a compilers: make sure cxx11_flag() is defined for all compilers 2016-05-05 10:44:41 +02:00
Todd Gamblin
13e52962ee Merge pull request #802 from gartung/std-cpp14 
Handle c++11 and c++14 correctly
 2016-05-05 01:41:55 -07:00
Gregory Becker
90b7b7ba5c Reworked compiler finding/storing/format to allow for multiple compilers with the same spec for different operating systems. TODO: fix config tests. All others up to date 2016-05-04 21:42:59 -07:00
Elizabeth F
2243de9e2f Make quiet mode default for spack spconfig 2016-05-04 23:39:27 -04:00
Denis Davydov
c3317819cb mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names 2016-05-04 10:37:52 +02:00
Brett Viren
346f102234 Bug fixes, tty tweaks. 2016-05-01 17:13:44 -04:00
Brett Viren
8c140f4725 Change the action from parameter to subcommand to fit Spack convention. 2016-05-01 17:13:43 -04:00
Brett Viren
a2b9a000dc Add add removal and status actions in addition to link and add various ways to filter what is done. 2016-04-29 15:12:09 -04:00
Gregory Becker
4ba73dac34 Unit tests for cflags PR 2016-04-28 14:01:38 -07:00
Todd Gamblin
8cd13d4b35 Make arch command print out the platform. 2016-04-28 12:49:21 -07:00
Brett Viren
49956faab9 First try to make file system views of specs. 2016-04-28 14:54:14 -04:00
Gregory Becker
3b84345b77 Changed yaml format for node_dicts to mitigate future incompatibilities 2016-04-28 11:05:59 -07:00
Todd Gamblin
c35994d5bf Merge pull request #850 from mathstuf/partial-downloads 
fetch_strategy: download to temporary files
 2016-04-28 10:22:43 -07:00
Gregory Becker
ae5198e5e7 Merged in current develop to cflags 042716 2016-04-27 19:38:51 -07:00
Elizabeth F
4d466fe879 spack setup: Fix broken module convenience settings. 2016-04-27 20:57:04 -04:00
Todd Gamblin
8773a0b747 Merge pull request #847 from epfl-scitas/features/test_install_with_time 
test-install command : added elapsed time + xml is prettyprinted
 2016-04-27 17:32:21 -07:00
Ben Boeckel
e53571d2f0 fetch_strategy: download to temporary files 
This supports graceful recovery if spack is killed via a signal (e.g.,
SIGINT) while downloading a file.

Fixes #287.
 2016-04-27 14:49:27 -04:00
Brett Viren
b5ebd12fe2 Add to sub dirs checked for pkg-config files. 
This lets me build against the pure-include package Eigen.
 2016-04-27 13:45:05 -04:00
Massimiliano Culpo
b1ba869b37 test-install : fixed error in logic exposed by tests 2016-04-27 19:28:13 +02:00
Massimiliano Culpo
4846ab70d8 test-install : python 2.6 compatibility 2016-04-27 18:21:36 +02:00
Massimiliano Culpo
ec5bb88820 test-install : unit tests (hopefully) fixed for real 2016-04-27 18:06:41 +02:00
alalazo
42fab1591d test-install : fixed unit tests 2016-04-27 17:19:03 +02:00
alalazo
12dbd65f4c test-install : first draft that works 2016-04-27 13:56:32 +02:00
Benedikt Hegner
b7c064142e preserve lookup order in PATH when invoking 'spack compiler add' 2016-04-27 01:23:53 +02:00
Ben Boeckel
603467785b Compiler find docs (#831) 
* docs: mention `spack compiler find`

* docs: fix some weird wording.
 2016-04-26 10:00:54 -07:00
alalazo
99b52e6e71 test-install : wip to add other information 2016-04-26 16:41:33 +02:00
Ben Boeckel
ff9145f8a5 executable: quote arguments 
This allows command line arguments with spaces to be shown. The quoting
madness is because a single quote cannot appear within a single quoted
argument on the command line. To do so, you have to stop the single
quote argument, double quote the single quote, then open the single
quote again:

    $ echo 'before'"'"'after'
    before'after

Fixes #174
 2016-04-25 09:44:17 -04:00
Ben Boeckel
ed16bd133a compiler: add "find" subcommand (#818) 
And make "add" an alias to it.

Fixes #713.
 2016-04-23 13:34:51 -07:00
alalazo
67a01ef2ee tcl : extended conflict to be an array of strings 2016-04-22 10:50:24 +02:00
Todd Gamblin
fa02f94ca4 Regression test for not adding RPATHs with ld -r (#809, #821) 
- ld -r is only broken with rpaths on OSX; this tests that
  specific case.

- test should still work cross-platform.
 2016-04-21 23:12:33 -07:00
Denis Davydov
a0989ad672 minor cleanup of environment-modules documentation (#814) 
* minor cleanup of environment-modules documentation

* environment modules: update usage instructions
 2016-04-21 19:26:19 -07:00
Patrick Gartung
d5d1e89cbd remove use of unknown environment variable in lib/spack/env/cc (#821) 2016-04-21 19:15:54 -07:00
Adam Lyon
e92da6a6ba Handle c++11 and c++14 correctly 2016-04-19 16:52:08 -05:00
alalazo
5deaaa278c modules : added a few unit tests 2016-04-19 14:25:12 +02:00
alalazo
bce276d573 fix : missing autoload, failing validation 2016-04-18 17:51:53 +02:00
alalazo
50b148ca22 modules : tcl modules handle 'conflict' directive. This should completely cover the functionality in #498 2016-04-18 13:22:50 +02:00
alalazo
18a241fe21 modules : added hook for module specific extensions 2016-04-18 13:22:31 +02:00
alalazo
c69acfa5c8 naming work correctly 2016-04-18 13:22:04 +02:00
alalazo
00f44d558a modules : started working on naming schemes and conflict 2016-04-18 13:21:41 +02:00
alalazo
1b4c4be151 modules : category is a single word (as I am not sure how dotkit will react to spaces) 2016-04-13 12:44:51 +02:00
alalazo
c422ce7c1d modules : added doc strings, fixed minor style issues, filtered from dependencies blacklisted modules 2016-04-13 11:26:22 +02:00
alalazo
fcd58a95dd Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-04-13 10:49:00 +02:00
alalazo
27280ea8be fix : added regression tests 2016-04-12 17:28:23 +02:00
alalazo
80678b2188 fix : proper update of config file (before it was discarding architectures that were not the current one) fixes #774 2016-04-12 16:54:51 +02:00
alalazo
41f365112c modules : added provenance comment in tcl header 2016-04-12 09:13:50 +02:00
alalazo
3959ca6270 modules : added possibility to blacklist or whitelist module files 2016-04-11 18:10:06 +02:00
alalazo
0e2b1359e3 modules : fixed bug preventing the creation of modulefiles autoloading only direct dependencies 2016-04-11 11:01:47 +02:00
Massimiliano Culpo
a5a5dbc408 tcl module file : added new-lines in autoload (per @glennpj bug report) 2016-04-10 13:21:41 +02:00
Mario Melara
3a281b2399 Commented out the add_x_from_string methods since we don't need to worry about it. Also, changed the way architecture is set. Todd wanted to have users be able to input just frontend and/or backend in the architecture spec. This will be able to parse those inputs. 2016-04-08 12:46:44 -07:00
Mario Melara
01a36ab333 Changed the logic of concretize. We don't have to worry about whether the part of the spec is a string since any string parsed is made into an object via the Arch constructor. Any dependencies will take the root arch spec as well 2016-04-08 12:44:27 -07:00
Mario Melara
5bcd1e7ccd If we already have the name and the platform, then we should probably go ahead and concretize it in the constructor. Else leave it as None and concretize it later. 2016-04-08 12:43:08 -07:00
Mario Melara
618b3f5f2d Changed default to default_target so the tests can pass 2016-04-08 11:18:30 -07:00
Mario Melara
277efc1dfb Added test that works on every type of combination the user could possibly enter for arch spec 2016-04-08 11:17:56 -07:00
Matthew LeGendre
1af88be371 Spack was no longer using $TMPDIR for its stage area at LLNL. Spack's directory search was unnecessarily putting candidates that contained your username at the end of its search list. 2016-04-08 11:06:14 -07:00
Mario Melara
0d1a1b7526 Changed _set_architecture so if user inputs only the target, then os is None. This prevents the os being referenced before assignment error 2016-04-08 10:29:37 -07:00
Mario Melara
6ff6c805af Assigned self.front_os, and back_os to self.default. Helps with testing. If we're on a darwin or linux machine, chances are there is no back end or front end operating system, but rather than have those as None, I just assign them the default which is detected via python platform. 2016-04-08 10:28:30 -07:00
Mario Melara
7b777568ed Added new concretization of architecture tests, test each combination of user input to make sure the correct os and target are chosen 2016-04-07 14:38:43 -07:00
Mario Melara
0ad317213c Changed architecture parser so that if user just enters in frontend or backend, then both the os and target will take those names. In the concretize method the frontend target/os and backend target/os will be picked to match each other 2016-04-07 14:38:04 -07:00
Mario Melara
07df403203 Cleaned up the concretize_architecture method by removing commented out code 2016-04-07 14:37:00 -07:00
Mario Melara
143a4d7f76 Changed default to default_target, also added frontend and backend to operating system 2016-04-07 14:36:26 -07:00
alalazo
1714f410f0 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-04-07 10:48:16 +02:00
alalazo
7dc1524c08 modules : added stub for dotkit (to be verified) 2016-04-07 10:48:05 +02:00
Glenn Johnson
b19d6ab9c5 Check for non-numeric bits in the stem. 2016-04-06 19:08:01 -05:00
Glenn Johnson
fbabfc593d Make R extensable and add a couple of packages for verification. 
Added R as a build system so that the create template will have the
correct configure line.
Added a regex for version parsing as the R URLs are a little odd.
 2016-04-06 16:44:22 -05:00
Mario Melara
99117cbc90 pulled from current repo the build_environment.py. Added module loading methods from our cray port 2016-04-06 14:07:22 -07:00
Mario Melara
918ad28a93 Changed all target values to architecture. Also added a sort_key method so that older architecture specs can be sorted with the newer ones 2016-04-06 13:58:29 -07:00
Massimiliano Culpo
4001663982 leftover from cherry-pick 2016-04-06 22:19:07 +02:00
alalazo
73b6214a13 module files : proper cleanup on uninstall fixes #216 
Conflicts:
	lib/spack/spack/test/database.py
 2016-04-06 22:10:04 +02:00
Mario Melara
749508af01 Found loops calling all_compilers that were always reading in the config file which lead to a slowdown, the fix is to cache the config file so we don't waste time re-reading the config file in again. 2016-04-06 12:05:29 -07:00
Mario Melara
3bf75fab3f Cleaned up architecture. Changed operating_system from dictionary method 2016-04-06 12:03:26 -07:00
alalazo
21b7734d92 modules : removed debug leftover 2016-04-06 17:08:31 +02:00
alalazo
7904f75782 modules : all the other strings are lower case 2016-04-06 17:05:47 +02:00
alalazo
e4cfe74887 modules : customization based on specs 2016-04-06 16:42:56 +02:00
alalazo
e993c17f89 modules : added environment modifications from configuration file 2016-04-06 14:02:27 +02:00
alalazo
d636b4fdde modules : more sensible name to blacklist environment variables 
modules : added skeleton to permit modifications based on specs
 2016-04-06 13:42:47 +02:00
Todd Gamblin
e104592e1f Merge pull request #738 from eschnett/eschnett/cleanup-cc 
Clean up cc script
 2016-04-05 10:50:45 -07:00
alalazo
670cb423f9 modules : iterating on all the dependencies doesn't reuire try/except KeyError 2016-04-05 18:44:40 +02:00
alalazo
5da37c573f modules : don't pass stream around 2016-04-05 18:41:38 +02:00
alalazo
2968b60ee0 module file : added autoload and prereq 2016-04-05 18:03:09 +02:00
alalazo
ca7d701007 module file : all the dependencies can affect the run_time environment, not only extendees 2016-04-05 16:10:04 +02:00
alalazo
c352249e30 EnvModules : narrowing the type of exceptions being "handled" 2016-04-05 14:55:05 +02:00
Erik Schnetter
4ce03b75bc Correct typo 2016-04-05 07:42:23 -04:00
alalazo
d546d828d3 module file : added filtering based on environment variable name 2016-04-05 13:20:28 +02:00
Mario Melara
9bfc83ac5c Changed so that py_platform.dist() grabs the major version number. 2016-04-04 15:36:10 -07:00
Todd Gamblin
0296f96c7b Resolves #739. Don't call setup_dependent_* for package itself. 2016-04-04 13:56:15 -07:00
Mario Melara
6d73c86209 Gives error on cori that [PrgEnv-xx, gcc/x.x.x] is not part of the schema. Changed it to oneOf : type : array to get rid of the error. 2016-04-04 13:45:15 -07:00
Mario Melara
9c071ea40d Changed modulecmd parameters. return_oe is not one of the parameters in the mainline spack repo. Changed the args to the appropriate ones in the new spack 2016-04-04 13:44:24 -07:00
Erik Schnetter
0ff059e388 Clean up comments and output messages 2016-04-04 16:00:09 -04:00
Erik Schnetter
83d6e04d39 Convert = to == in tests; untabify 2016-04-04 15:38:21 -04:00
Erik Schnetter
7bc28cc334 Clean up cc script 2016-04-04 14:33:48 -04:00
Todd Gamblin
5084130e71 Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules 
Added Environment Modules
 2016-04-04 10:41:54 -07:00
Todd Gamblin
c7b11360e9 Merge pull request #732 from citibeth/efischer/160403-ConditionalExtendsBugfix 
[Needs Review] Fix conditional extends (BUG #683)
 2016-04-04 10:21:26 -07:00
Todd Gamblin
a6c1cfe037 Merge pull request #670 from epfl-scitas/uninstall_improved 
enhancement : recursive uninstallation of dependent packages
 2016-04-04 10:04:14 -07:00
Todd Gamblin
bb968fc5a2 Fix #620, Resolve #664. Fix issues with build environment. 
- Also added better regression tests for build environment.
 2016-04-04 02:52:38 -07:00
alalazo
f40b0f52e0 uninstall : updated documentation and error messages 2016-04-04 10:59:01 +02:00
alalazo
401dcb3635 uninstall : renamed --recursive to --dependents 2016-04-04 10:28:47 +02:00
Elizabeth F
2f4d8a634d Fix conditional extends (BUG #683) 2016-04-03 21:41:46 -04:00
citibeth
281835887a Added documentation for recursive modules 2016-04-01 22:54:49 -04:00
Elizabeth F
c6d8208150 Added recursive module loading 2016-04-01 22:54:42 -04:00
citibeth
459aab628d Added documentation for installing Environment Modules with Spack. 2016-04-01 16:00:58 -04:00
Peter Scheibel
9eb314fcaa merge from develop 2016-03-31 12:56:34 -07:00
Todd Gamblin
220c72d67f Merge branch 'features/blas-lapack-hardening' into develop 2016-03-31 11:37:09 -07:00
Todd Gamblin
a670408617 Quick fix for pkg diff. 2016-03-31 11:34:27 -07:00
Tom Scogland
5d2151ed64 reworked to deal with stage.path as property 
This version actually pulls the path through the package to deliver it
to each stage on creation when passed through the command.  This is
necessary due to the new StageComposite class that makes setting the
path directly on the stage impractical, it also takes the logic out of
package for the most part, which seems like an improvement.
 2016-03-31 10:20:55 -07:00
Tom Scogland
63f824b218 add a path argument to the stage command 
Allow users to use spack to stage a, potentially complex, package into a
given path.  This is nice for packages with multiple resources that must
be placed, for example LLVM with all sub-projects.
 2016-03-31 09:56:26 -07:00
Massimiliano Culpo
4f6320a7eb uninstall : added unit tests 2016-03-31 13:22:48 +02:00
Massimiliano Culpo
dd1c667d8d uninstall : changed error message 2016-03-30 16:10:20 +02:00
Peter Scheibel
a0c42a3fd1 removed stale TODO 2016-03-29 18:58:18 -07:00
Peter Scheibel
c40559433b added docstring 2016-03-29 18:54:24 -07:00
Peter Scheibel
03d907e1e5 in the case of multiple digests, avoid creating different mirror filenames from run to run (as long as the available digests do not change) 2016-03-29 18:48:25 -07:00
Peter Scheibel
ce4de6227e (1) access package via spec property (2) use any digest to form archive filename 2016-03-29 18:45:58 -07:00
Peter Scheibel
bee224c567 mirror archive filename now includes the digest type as well as the digest 2016-03-29 18:25:22 -07:00
Gregory Becker
7e9baf9e25 Made architecture test robust for more architectures 2016-03-29 11:23:36 -07:00
Massimiliano Culpo
653d7c5257 uninstall : minor fixes 2016-03-29 17:28:46 +02:00
Todd Gamblin
a05bea7de5 Merge pull request #681 from LLNL/bugfix/complete-restage 
Fix bug in restage
 2016-03-29 05:11:21 -07:00
Todd Gamblin
dfc5cf288c Fix bug in restage 
- Restage previously only removed the source directory from the stage.
- Now removes any other directories in stage as well.
 2016-03-29 04:35:41 -07:00
Todd Gamblin
e1fdd4341b Merge branch 'eschnett-correct-cc' into develop 2016-03-29 04:16:18 -07:00
Todd Gamblin
f80e839ff4 Handle Darwin's ld -r option properly 
- ld -r doesn't work with RPATH on OS X.

- for GNU ld, the -r option only means 'relocatable',
  and doesn't affect RPATH.

- This adds special handling to omit RPATHs for ld -r on OS X
 2016-03-29 03:14:39 -07:00
Todd Gamblin
a14527ec06 Add command to compiler input log. 2016-03-28 15:34:25 -07:00
Massimiliano Culpo
1141f11955 uninstall : added user confirmation 2016-03-29 00:28:02 +02:00
Todd Gamblin
d8579a5b80 Simplify cc: Remove old logic and add better tests. 
- removed a lot of old logic that was only still needed for tests.

- Added better unit tests for dependency RPATH, -L, and -I args

- tests now check whether the compiler omits -I args in link mode.
 2016-03-28 04:11:54 -07:00
Todd Gamblin
f3dd889d44 Fix bug with lib64 RPATH setting in cc. 2016-03-28 03:51:05 -07:00
Todd Gamblin
eb397b5693 Merge pull request #669 from glennpj/module_format 
Wrap the long description of an environment module so it is more readable
 2016-03-27 17:30:07 -07:00
Todd Gamblin
8b45d6f84f Merge pull request #658 from davydden/metis_parmetis_darwin 
metis/parmetis/oce/boost: correct install_name on Darwin via a global tool
 2016-03-27 16:10:05 -07:00
Denis Davydov
7eca1284c8 metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function. 2016-03-28 00:22:25 +02:00
Massimiliano Culpo
e0f463c4f9 uninstall : added recursive option 2016-03-27 23:56:41 +02:00
Glenn Johnson
5695e4c03d Wrap the long description of an environment module so it is more readable. 2016-03-27 15:42:20 -05:00
Todd Gamblin
ec107b290f Merge branch 'correct-cc' of git://github.com/eschnett/spack into eschnett-correct-cc 2016-03-27 13:38:06 -07:00
Todd Gamblin
e049fc2840 Run post-install hoooks before build stage is removed. 
- Build will properly fail when post-install hoooks fail.

- Post-install hooks have a proper working directory set now.
 2016-03-27 11:47:20 -07:00
Todd Gamblin
cde3320582 Add a method to find the containing directory of a library. 2016-03-27 11:32:42 -07:00
Todd Gamblin
dce590fb21 Add a dso_suffix variable to build_environment 
- Consolidate this in one place so that we don't have to do it in every build.

- Will update further once better OS support is committed.  Shoudl
  really be an attribute of the forthcoming `Platform` class.
 2016-03-27 11:32:42 -07:00
Todd Gamblin
b0b882cbb3 Speed up directives by skipping debug info in stack traversal. 
- `caller_locals()` doesn't need debug info, only frame locals.
- `get_calling_module()` doesn't either.

- Changed calls to `inspect.stack()` -> `inspect.stack(0)`
 2016-03-27 11:30:09 -07:00
citibeth
4a6b5d5247 Update to documentation formatting. 2016-03-27 00:14:10 -04:00
citibeth
a1c965d70d Fixed imports to make `git spconfig` work after recent merge from develop. 2016-03-26 20:40:22 -04:00
Peter Scheibel
06c98320a8 handle case where file contents change but resource name does not (e.g. if resource maintainer uses same name for each new version of a package) 2016-03-25 18:38:26 -07:00
Gregory Becker
57ced37229 Fixed a bug in the testing 2016-03-25 17:03:49 -07:00
Gregory Becker
618a9b2d7b Fixed bug in platform names that I introduced yesterday 2016-03-25 15:41:22 -07:00
Elizabeth F
9889b1a5fe Added documentation for StagedPackage, etc. 2016-03-25 17:15:15 -04:00
Elizabeth F
8f675b0ee8 Made StagedPackage user-visible. 2016-03-25 17:15:06 -04:00
citibeth
358b387283 Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage 2016-03-25 17:14:35 -04:00
citibeth
8019748396 Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage 
# Conflicts:
#	lib/spack/spack/package.py
 2016-03-25 15:36:54 -04:00
Peter Scheibel
bd5abb2922 spacing issue 2016-03-24 19:48:15 -07:00
Peter Scheibel
6423eab917 implemented cache_local method for DIY stage (as a noop) 2016-03-24 19:45:10 -07:00
Peter Scheibel
142d1f5cbc stage creates cache fetcher with cache object (so it can be mocked for tests) 2016-03-24 19:28:21 -07:00
Gregory Becker
315623d361 Fixed things from merge. 2016-03-24 16:55:46 -07:00
Adam J. Stewart
9985816642 Fix spack info indentation 2016-03-24 14:49:41 -05:00
Peter Scheibel
fe71ba992d remove unused import 2016-03-24 12:16:50 -07:00
Peter Scheibel
13bf7d4ff1 (1) move definition of MockCache to test command (no definitions or extra work is required in MockPackagesTest) (2) removing outdated logic (which originated in this branch) and minor cleanup 2016-03-24 12:02:39 -07:00
alalazo
758a9c9096 python extensions : create PYTHONPATH in module files 2016-03-24 10:57:46 +01:00
alalazo
f095e619b9 module files configuration : enable/disable logic is now positive 2016-03-24 09:31:28 +01:00
Peter Scheibel
dbfa6c925e replace references to cache directory with references to new cache object. tests may assign a mock cache but by default it is None (this will avoid any implicit caching behavior confusing unit tests) 2016-03-23 20:18:58 -07:00
Peter Scheibel
ed0f6f75a7 clear test cache before and after each MockPackagesTest (I think Ive got a better way to avoid test fragility but Ill add this for now) 2016-03-23 19:49:28 -07:00
Gregory Becker
688eca23ff cleanup 2016-03-23 09:54:57 -07:00
alalazo
d93f2b335d modules : fixed annoying indent 2016-03-23 16:04:36 +01:00
alalazo
0fbdb3f65d modules : added configuration file with disable keyword 2016-03-23 15:54:26 +01:00
Todd Gamblin
38350ae33d resurrect preferred=True option for packages lost in merge of externals support. 
- Pyton 2.7.11 is preferred again.
 2016-03-23 01:32:54 -07:00
Todd Gamblin
c4134ee71e Fix #608: broken numpy build. 
- Failed to catch all instances of modify_module when it was renamed
  to setup_dependent_package.

- Refactored remaining modify_module calls.

- Also modified Python's setup_dependent_package slightly: only
  creates empty site-packages directory for Python extensions now, not
  for all dependents.
 2016-03-23 00:36:32 -07:00
Peter Scheibel
cb9fba98d8 (1) relocate cache for tests (2) initial approach for restoring unit tests (just for git tests although the same concept applies to the other unit tests which are failing - namely those for svn and hg) 2016-03-22 19:37:47 -07:00
Gregory Becker
7c729d4c3c Merged newarch into merge 2016-03-22 15:22:51 -07:00
Peter Scheibel
75460d8586 URLFetchStrategy.archive does a copy vs. a move now 2016-03-22 10:43:43 -07:00
Todd Gamblin
a26992ef55 Change from PR #552: rename setup_dependent_python_module -> setup_dependent_package 
- Fixed in package.py
- Fixed wrong prototypes in packages that use it.
- Fixed build_environment to set module variables properly
  - added hacky fix to ensure spec/package consistency in build processes.
  - Need to think about defensive spec copy done by `Repo.get`.  May be
    time to think about an immutable spec implementation.
 2016-03-22 01:56:16 -07:00
Peter Scheibel
41a97c8f80 temporarily wrap archiving with conditional to avoid moving (this still causes a failure on the initial download) 2016-03-21 20:55:23 -07:00
Peter Scheibel
b255f02762 undoing whitespace-only diff 2016-03-21 20:50:26 -07:00
Peter Scheibel
ee5e507ff6 pursuing a strategy using fetch.archive and treating var/spack/cache as a mirror. this should support both URLFetchStrategy as well as VCSFetchStrategy (the previous strategy supported only the former). this won't work until URLFetchStrategy.archive is updated 2016-03-21 20:48:12 -07:00
Todd Gamblin
b1516f64eb Rename some environment methods to be less repetitive, add set_path. 2016-03-21 16:01:40 -07:00
Todd Gamblin
439d47b4e4 Refactor environment setup. 
- Gave setup_environment and setup_dependent_environment more similar
  signatures. They now allows editing the Spack env and the runtime
  env for *this* package and dependents, respectively.

- modify_module renamed to setup_dependent_python_module for symmetry
  with setup_dependent_environment and to avoid confusion with
  environment modules.

- removed need for patching Package objects at runtime.

- adjust packages to reflect these changes.
 2016-03-21 16:01:35 -07:00
Todd Gamblin
e88df95b42 Remove unused code from modules.py 2016-03-21 16:01:26 -07:00
Todd Gamblin
48b35bb495 Fix print function in uninstall.py 2016-03-21 16:00:50 -07:00
Todd Gamblin
861a235ecb Merge pull request #552 from epfl-scitas/features/env_objects_flying_around 
enhancement proposal : customization of module files
 2016-03-21 15:56:20 -07:00
Matthew LeGendre
5d06daeb5e Add test for issue 573, child with compiler not respected in concretization 2016-03-21 14:28:34 -07:00
Matthew LeGendre
b79fce76cb Fix issue 573 where Spack was ignoring user's compiler preference in concretization 2016-03-21 14:28:07 -07:00
alalazo
fbeffee91e Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 
Conflicts:
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/netlib-scalapack/package.py
 2016-03-21 09:46:49 +01:00
alalazo
aef6d50b08 uninstall : fixed typo (print statement vs. print function) 2016-03-21 09:23:25 +01:00
Peter Scheibel
d632266a40 move cache to var/spack/cache 2016-03-18 17:15:45 -07:00
Peter Scheibel
fd067dd8b8 since only archives with checksums can be retrieved from the cache, make sure that an archive without a checksum isnt placed there (this wouldn't cause an error but does waste space and might be confusing) 2016-03-18 17:00:13 -07:00
Peter Scheibel
ac7323118e rename for clarity 2016-03-18 16:34:45 -07:00
Peter Scheibel
16fa40b893 (1) add a var/cache directory under spack. (2) downloads from URLFetchStrategy check the cache and skip the download if the source is available there. 2016-03-18 15:50:24 -07:00
Todd Gamblin
e9126baaab Add docs for InstallError. 2016-03-18 13:42:45 -07:00
Todd Gamblin
23f3f1adfe Make InstallError and ExternalPackageError visiible in packages. 2016-03-18 13:32:37 -07:00
Todd Gamblin
741bea032c Merge pull request #574 from LLNL/features/flattener 
Created flatten_dependencies function
 2016-03-18 12:13:48 -07:00
Gregory Becker
151b04637e changed function name and removed hardcoded libs dir 2016-03-18 11:55:31 -07:00
Gregory Becker
af7e3cadde cleanup 2016-03-18 11:34:07 -07:00
Gregory Becker
76672a4e34 Refactoring flat_install 2016-03-18 11:28:44 -07:00
Todd Gamblin
4e9ba49272 Merge pull request #576 from adamjstewart/features/tar 
Add support for .tar files
 2016-03-18 11:13:17 -07:00
Adam J. Stewart
6acb830263 Add support for .tar files 2016-03-18 13:03:55 -05:00
Gregory Becker
80495e50f9 added error class for error that should never come up 2016-03-18 09:46:18 -07:00
Gregory Becker
1fa38689d8 Created flatten_dependencies function that dummy packages can use to create sane install environments. 2016-03-18 09:35:56 -07:00
alalazo
491babd5cd env modifications : added a validation rule 2016-03-18 17:09:20 +01:00
alalazo
1e468c5541 modules : added formats mapping 2016-03-18 16:02:44 +01:00
alalazo
ccd90df62f modules : turned category into a property (logic can be extended later) 2016-03-18 15:41:14 +01:00
alalazo
67ca2c704b modules : fixed bug in modify_module arguments 2016-03-18 15:18:26 +01:00
alalazo
ec8cc2b528 PYTHONPATH : python patches methods for its extensions 2016-03-18 14:40:53 +01:00
Ben Morgan
076cc764a7 Add additional suffixes for GCC compiler 2016-03-18 11:26:22 +00:00
alalazo
f9438c75d0 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-18 10:26:34 +01:00
Erik Schnetter
f3ea0420f8 Import recent changes 2016-03-17 21:53:13 -04:00
Erik Schnetter
84b7cd593f Merge branch 'develop' into correct-cc 
# Conflicts:
#	lib/spack/env/cc
 2016-03-17 21:52:24 -04:00
Todd Gamblin
90268876f7 Change sanity_check_[file|dir] to sanity_check_is_[file|dir], per #554 
- Add documentation as well.
 2016-03-17 18:49:58 -07:00
alalazo
ac394718ec python : implemented possible solution 2016-03-17 18:22:07 +01:00
alalazo
e673127263 package : added documentation 2016-03-17 18:11:23 +01:00
alalazo
38c3c84969 environment : added caller information 2016-03-17 17:37:33 +01:00
alalazo
3da4d6664b environment : simplified hierarchy according to comments in review 2016-03-17 15:38:08 +01:00
alalazo
f0f0663d1b package : split environment_modifications into setup_environment and setup_dependent_environment. 
package : renamed `module_modifications` to `modify_module` for consistency
 2016-03-17 15:11:39 +01:00
alalazo
9cdd79e33f modules : restored previous logic for path inspection 2016-03-17 14:14:18 +01:00
Adam J. Stewart
bb04d5cc63 Fix grammar in mirrors documentation 2016-03-16 14:27:22 -05:00
alalazo
ac762e95a6 modules : removed dead code 2016-03-16 16:23:02 +01:00
alalazo
597727f8be tclmodules : added hooks to process EnvironmentModifications objects 2016-03-16 15:19:13 +01:00
alalazo
b45ec3f04e environment : simplified modification of the environment 2016-03-16 10:55:28 +01:00
alalazo
b2c98feea4 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-16 09:02:35 +01:00
Todd Gamblin
7eca383b10 Add sanity check paths to packages; fix #505 2016-03-15 17:16:04 -07:00
Matthew LeGendre
108ea1522a Merge pull request #549 from LLNL/bugfix/gh538-less-greedy-concretize 
Bugfix/gh538 less greedy concretize
 2016-03-15 16:18:54 -07:00
Todd Gamblin
15bbd088e6 Fix #551: version bug in spack create 
- `spack create` now sets a proper version in generated file, based on
  the filename, even if it can't find any tarballs for the package.
 2016-03-15 14:38:06 -07:00
alalazo
c8cc6f4fc1 test : fix for python 2.6 2016-03-15 16:59:29 +01:00
alalazo
ccced9f290 package : optimized imports 2016-03-15 15:12:39 +01:00
alalazo
cc3d9f4eb7 environment : added test, modified docs 2016-03-15 15:09:35 +01:00
alalazo
572cb93bf8 package : renamed setup_dependent_environment to module_modifications 2016-03-15 14:05:30 +01:00
alalazo
c85888eb57 package : added environment_modifications 2016-03-15 13:36:41 +01:00
alalazo
bcea1df01c environment : refactoreded set_build_environment_variables 2016-03-15 10:49:33 +01:00
alalazo
f20247ae55 environment : refactoreded set_compiler_environment_variables 2016-03-15 10:08:54 +01:00
alalazo
f9923452b3 environment : added machinery to collect modifications to the environment and apply them later 2016-03-14 14:35:48 +01:00
Todd Gamblin
f2761270f3 Make concretization less greedy: add backtracking for virtuals. 
- `_expand_virtual_packages` now gets a candidate list and will try
  all the candidates.

  - Good news: If the first virtual in the list conflicts with something else in
               the spec, we'll keep trying until we find a good one.

  - Bad news: Only looks as far as the next normalize(); can't see
              conflicts further ahead than that if they're inevitable
              some other virtual expansion.

- Refactor `concretize.py` to keep all the nasty spec graph stitching in
  `spec.py`. This is more similar to before externals support.

  - `concretize.py` now just returns a list of candidates sorted by
    ABI compatibility to `_expand_virtual_packages`, and `spec.py`
    handles testing the candidates.

- Refactor the way external paths are handled in `config.py` and `concretize.py`:

  - previously, `spec_externals` returned spec/path pairs.  Now it
    returns specs with `external` set. Makes code in `concretize.py`
    more natural.
 2016-03-14 05:04:01 -07:00
Todd Gamblin
f45b8b1083 Add some tests for packages with multiple virtual dependencies. 
- Added mock `hypre` package, depends on `lapack` and `blas`.

- test cases where some packages provide both `lapack` and `blas`, but
  others do not.
 2016-03-14 05:02:50 -07:00
Todd Gamblin
05c761dee9 Add package_class method to spec. 
- Shouldn't call .package from within things like normalize() and
  concretize() beacuse spec may be inconsistent.

- Add `.package_class` property so that we can get at package metadata
  without constructing a Package with a Spec.

- should be faster than `.package` was, anyway. Use where possible.
 2016-03-14 04:59:29 -07:00
Todd Gamblin
003fd4d834 Optimize __eq__ and __ne__ in key_ordering 
- use `is` when possible before calling `_cmp_key()`
 2016-03-14 04:55:30 -07:00
Elizabeth F
5c865b9b70 Fixed typo in typo fix. 2016-03-13 19:44:04 -04:00
Elizabeth F
6f26c45143 Fixed typo bug. Made error comment more explicit 2016-03-13 19:41:09 -04:00
Elizabeth F
3383486adc Fixed typo bug. Made error comment more explicit 2016-03-13 19:39:45 -04:00
Elizabeth F
0426796d9f Fixed typo 2016-03-13 18:14:38 -04:00