Commit graph

18845 commits

Author SHA1 Message Date
g-mathias
c1efa09928
gromacs: new version 2020.3; variant nosuffix and mkl support (#17908)
* new version 2020.3; new variants nosuffix and fft; version selections for plumed

* fixed too long lines

* fixed whitespaces

* revised fft interface according to @haampie 's suggestions

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-07 07:03:14 -06:00
darmac
6fc6f1ea9d
activeharmony: add version 4.6.0 (#17867) 2020-08-06 23:51:47 -07:00
Adam J. Stewart
463aaef092 py-rasterio: add v1.1.5 2020-08-06 23:50:02 -07:00
Robert Pavel
07e426ce00
New package: ProfugusMC (#17914)
Added spackage for profugusMC
2020-08-06 23:45:19 -07:00
Mark W. Krentel
7d348268fb
hpctoolkit: fix commit hash for version 2020.08.03 (#17920) 2020-08-06 23:42:52 -07:00
Rao Garimella
cff383802a
Wonton (package): Fix sha 256 sum for version (#17916) 2020-08-06 23:41:48 -07:00
Justin S
7a5c0e0326
stacks (package): add version 2.53 (#17915) 2020-08-06 23:40:41 -07:00
Justin S
0f8ad5be1b
isescan: new package at 1.7.2.1 (#16589)
* isescan: new package at 1.7.2.1

* isescan: update external program paths

* isescan: use spack compiler
2020-08-06 22:26:52 -05:00
Rao Garimella
9a7834949d
New Package Wonton (#17882)
* new package Wonton

* remove the flecsi variant because flecsi-sp does not have a spackage

* fix url, clean up whitespaces

* formatting

* put in explicit else clauses for variants in CMake section because CMake's behavior is system-dependent

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-08-06 13:55:24 -05:00
Adam J. Stewart
051e124533
Bazel: relax Java dependency (#17734)
* Bazel: relax Java dependency

* Flake8 fix
2020-08-06 13:02:02 -04:00
Julius-Plehn
f3ec1d445d
New package: HDFView (#17707)
* HDFView

* adds support for version 3.1.1
2020-08-06 09:02:40 -05:00
Todd Gamblin
9dbe1d7776
bugfix: fix spack -V with releases/latest and shallow clones (#17884)
`spack -V` stopped working when we added the `releases/latest` tag to
track the most recent release. It started just reporting the version,
even on a `develop` checkout. We need to tell it to *only* search for
tags that start with `v`, so that it will ignore `releases/latest`.

`spack -V` also would print out unwanted git eror output on a shallow
clone.

- [x] add `--match 'v*'` to `git describe` arguments
- [x] route error output to `os.devnull`
2020-08-05 17:01:18 -07:00
Robert Mijakovic
aee95fe9a9
GPI-2 new package (#17875)
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.

* Fixes a typo with one of the sha256 checksum..

* Adds version entries for new versions of Intel packages.

* Adds hashes for new versions of Intel packages.

* Adds missing hash of Intel compiler.

* Adds the newest version of Intel MPI 2019.8.

* Fixes hash for intel-parallel-studio and intel-tbb.

* Fixes version number of Intel MPI.

* Adds GPI-2 package.

* Fixes flake8 noticed issues.

* Second try to fix flake8 comment

* Fixes some issues adamjstewart noticed.

* Fixes package according to flake8 complains.

* Fixes flake8 issue.

* Renames next version to master and removes master.

* Adds maintainer into gpi-2 and returns master branch for the git
repository.

Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-08-05 16:38:23 -05:00
carlabguillen
cc0a1283c4
Variant with fortran for likwid package (#17889)
* Option to build likwid with fortran interface

* Removing white spaces

* Flake8 conform
2020-08-05 16:31:49 -05:00
h-denpo
a5914cecb4
add depends_on('zlib', type='link') (#17887) 2020-08-05 16:24:49 -05:00
darmac
dc321abb72
bcache:add pkg-config to find blkid.h in linux-utils (#17888) 2020-08-05 16:24:14 -05:00
Greg Becker
acfa2ea018
remove hypre variant from mfem and all references to it (#17885) 2020-08-05 09:19:22 -07:00
darmac
afaae70855
nodejs: add version 8.11.4 (#17824)
* nodejs: add version 8.11.4

* node-js: refine configure() for different version
2020-08-05 10:12:14 -05:00
Ronak Buch
e64e600fbb
charmpp: added v6.10.2 (#17886) 2020-08-05 15:03:51 +02:00
Jen Herting
96f5075eb1
[py-smart-open] fixing dependencies (#17640)
* version 1.8.4 requires py-boto at 2.3.2:
* google-cloud-storage only in newer versions
2020-08-04 16:44:30 -07:00
Jen Herting
118948cb0a
[bowtie] added version 1.3.0. Patch fixed for new version (#17744) 2020-08-04 14:52:51 -07:00
Tim Haines
f9ee76a817
Dyninst: 10.2 release (#17847)
* Dyninst: 10.2 release

* Use 'elf' instead of 'elfutils'

* Use v10.2.0 tag

* Change minimum elfutils to 0.173

* Move STERILE_BUILD option to correct cmake_args

* make a sacrifice to the flake8 gods

* Add maintainer

* Revert to using elf@1 for elfutils
2020-08-04 13:48:08 -05:00
Brian Van Essen
54dc871524
Renamed the aluminum variant for thhe intra-node RMA functions. (#17861) 2020-08-04 12:52:59 -05:00
Ethan Stam
b3dd90b95c
ParaView: Allow all ParaView versions to depend on Python 2 (#17484)
* Allow all ParaView versions to depend on Python 2

* Keep conflict for 5.9 and up with python 2

* Fix line too long

* Don't use backslash

* Try fixing indent

* Clean logic for python cmake flags

* Try fixing indent
2020-08-04 12:51:49 -05:00
Toyohisa Kameyama
d77f388a0d
yorick: avoid hang to fputest on aarch64. (#17865) 2020-08-04 12:27:27 -05:00
Simon Frasch
cb676eab0f
Added new package: spla (#17868) 2020-08-04 12:24:07 -05:00
Robert Underwood
4eb3558d20
Prefer dynamic linking for Python in vim when +python (#17870)
Previously the python package for vim used static linking, and depending
on what system libraries were available and linked against could cause
symbol conflicts for python leading to segfaults in loading c modules in
the standard library (i.e. heapq).  This patch address this issue by
dynamically linking them.
2020-08-04 12:22:53 -05:00
Robert Underwood
b35b950ee2
Add openssh runtime dependency to git (#17872)
If you use git to clone a repository ssh, git transfers control the ssh
binary available on your path, if that ssh binary was built with
contradictory version of openssl/kerberos, then your git commands will
fail.
2020-08-04 12:21:55 -05:00
Adam J. Stewart
91671be7cc
py-keras-preprocessing: add new version (#17735) 2020-08-04 12:12:15 -05:00
t-nojiri
8977f7377a
abyss 2.1.4: fails to build with GCC 8 (#17614)
* abyss 2.1.4: fails to build with GCC 8

* abyss 2.1.4: fails to build with GCC 8

* abyss 2.1.4: Revise the points indicated by the review.
2020-08-04 12:11:52 -05:00
vvolkl
9d2b60ac0c
[delphes] pythia8 variant and cleanup (#17664)
* [delphes] new version

* [delphes] pythia8 variant

* [delphes] flake8
2020-08-04 12:11:13 -05:00
Zicklag
b85cc363c1
Add Espanso Package and its xdotool Dependency (#17586) 2020-08-04 12:06:46 -05:00
Simon Pintarelli
c3a38e0b14
sirius (new versions, fixes), q-e-sirius (new package), nlcglib (new package) (#17844)
* sirius, update versions, fixes, add missing options

- sirius/spfft: depend on fftw-api
- cleanup +shared option
- sirius add option for memory pool
- sirius add version 6.5.3 and 6.5.4
- sirius: add spfft dependency for @master, @develop

* add nlcglib package

Robust wave function optimization for SIRIUS.

* add q-e-sirius package

based on q-e package

* Update var/spack/repos/builtin/packages/q-e-sirius/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* nlcglib: pass nvcc_wrapper to cmake

* Add 6.5.6

* Make flake8 happy

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-04 12:03:04 -05:00
Mark W. Krentel
3a02d1a847
hpctoolkit: add v2020.08.03 (#17860)
Add version 2020.08.03.  Adjust the cuda args.  The --with-cupti arg
was redundant, even for old versions of hpctoolkit.
2020-08-04 13:39:47 +02:00
Enrico Usai
bd0fb35ff0
AWS ParallelCluster: added v2.8.1 (#17866) 2020-08-04 13:25:27 +02:00
Brian Van Essen
c203898663
Added versions for cuDNN 8.0.2. (#17862) 2020-08-04 13:05:29 +02:00
t-nojiri
23f61ae2b0
subread: extend support for aarch64 to v2.0.0 (#17864) 2020-08-04 13:01:39 +02:00
g-mathias
9c8d4be569
new plumed versions 2.5.5 and 2.6.1; bumped default to 2.5.5 (#17850)
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-03 23:15:57 -05:00
albestro
7154351860
HPX: fix wrong method name and use define/define_from_variant methods (#17851)
* bug fix: wrong method name

* refactoring using define_from_variant and define

* flake8 style fix

* revert change string format
2020-08-03 23:15:23 -05:00
Harmen Stoppels
9318029b63
Bump cmake (#17852) 2020-08-03 23:12:07 -05:00
Harmen Stoppels
c07102ac9f
Fix typo: yaml -> json (#17854) 2020-08-03 23:11:41 -05:00
mic84
1c4b6bad43
amrex:: new version 20.08 (#17856) 2020-08-03 23:08:42 -05:00
darmac
8e1e3ac8c3
canu: fix depends issue & using java instead of jdk (#17599)
* canu: fix depends issue & using java instead of jdk

* Update var/spack/repos/builtin/packages/canu/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03 23:05:37 -05:00
darmac
a7f1565efb
Add new package: ycsb (#17788)
* Add new package: ycsb

* refine mongodb-async-driver jar path
2020-08-03 23:04:48 -05:00
darmac
1884822b56
Add new package: slider (#17799)
* Add new package: slider

* refine version check
2020-08-03 23:04:09 -05:00
darmac
0cc2377de6
Add new package: giraph (#17790)
* Add new package: giraph

* refine version check
2020-08-03 23:03:25 -05:00
Claire Guilbaud
ce7aefbb4f
Packages/py colorspacious (#17623)
* typo error correction

* Adding recipe for `colorspacious` (a python package)

* Copyright year changed

* revert last commit on basic_usage.rst

* better with a good description

* fix according to failed test

* Update var/spack/repos/builtin/packages/py-colorspacious/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-colorspacious/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03 23:01:03 -05:00
Massimiliano Culpo
b1133fab22 MacOS nightly builds: use Python 3.7 in CI
Nightly builds with MacOS started failing again
due to an upgrade of the default virtual environment
that now uses Python 3.8

This makes us hit #14102 and every build fails. This
commit should be reverted along with the fix to #14102.
2020-08-03 17:23:10 -07:00
Harmen Stoppels
827ca72c26
Fix docs about containers on cray (#17431)
* For detecting Cray: CRAYPE_VERSION is not used, but MODULEPATH

* Fix typo and write Cray with a capital
2020-08-03 16:16:18 -07:00
Adam J. Stewart
a67a0e3181
py-astropy: add version 4.0.1.post1, update header finding (#17838)
* Add install tests
* Add pkgconfig dependency to find dependency headers (specifically
  wcslib)
2020-08-03 11:51:29 -07:00