Commit graph

18118 commits

Author SHA1 Message Date
Massimiliano Culpo
30a9e6462f bugfix: work around issue handling packages not in any repo 2021-02-17 17:07:24 -08:00
Todd Gamblin
0e725f0ab1 concretizer: refactor handling of special variants dev_build and patches
Other parts of the concretizer code build up lists of things we can't
know without traversing all specs and packages, and they output these
list at the very end.

The code for this for variant values from spec literals was intertwined
with the code for traversing the input specs. This only covers the input
specs and misses variant values that might come from directives in
packages.

- [x] move ad-hoc value handling code into spec_clauses so we do it in
  one place for CLI and packages

- [x] move handling of `variant_possible_value`, etc. into
  `concretize.lp`, where we can automatically infer variant existence
  more concisely.

- [x] simplify/clarify some of the code for variants in `spec_clauses()`
2021-02-17 17:07:23 -08:00
Robert Maynard
9499dc4a7e VTK-m: update to specify correct requirements to kokkos (#20097) 2021-02-17 17:07:23 -08:00
Massimiliano Culpo
ecfba13d89 concretizer: each external version is allowed by definition (#20247)
Registering external versions among the lists of allowed ones
generates the correct rules for `version_satisfies`
2021-02-17 17:07:22 -08:00
Massimiliano Culpo
a6d433b937 concretizer: restrict maximizing variant values to MV variants (#20194) 2021-02-17 17:07:22 -08:00
Matthias Wolf
b4f79f3cb7 environment installs: fix reporting. (#20004)
PR #15702 changed the invocation of the report context when installing
specs, do the same when building environments.
2021-02-17 17:07:22 -08:00
Greg Becker
30290acf67 avoid circular import (#20236) 2021-02-17 17:07:21 -08:00
Andrew W Elble
92de484228 concretizer: call inject_patches_variants() on the roots of the specs (#20203)
As was done in the old concretizer. Fixes an issue where conditionally
patched dependencies did not show up in spec (gdal+jasper)
2021-02-17 17:07:21 -08:00
Massimiliano Culpo
b78cc5b43d concretizer: try hard to infer the real version of compilers (#20099)
fixes #20055

Compiler with custom versions like gcc@foo are not currently
matched to the appropriate targets. This is because the
version of spec doesn't match the "real" version of the
compiler.

This PR replicates the strategy used in the original
concretizer to deal with that and tries to detect the real
version of compilers if the version in the spec returns no
results.
2021-02-17 17:07:21 -08:00
Harmen Stoppels
571e36787b Fix hipcc once more (#20095) 2021-02-17 17:07:20 -08:00
Massimiliano Culpo
63d75cd089 boost: disable find_package's config mode for boost prior to v1.70.0 (#20198) 2021-02-17 17:07:20 -08:00
Andrew W Elble
598c25b434 concretizer: don't optimize emitting version_satisfies() (#20128)
When all versions were allowed a version_satisfies rule was not emitted,
and this caused conditional directives to fail.
2021-02-17 17:07:19 -08:00
MichaelLaufer
24fb43cc43 Fixes compile time errors (#20006)
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
2021-02-17 17:07:19 -08:00
Massimiliano Culpo
0b7a22dea2 spec: return early from concretization if a spec is already concrete (#20196) 2021-02-17 17:07:18 -08:00
Massimiliano Culpo
1e1a6f4e30 concretizer: remove ad-hoc rule for external packages (#20193)
fixes #20040

Matching compilers among nodes has been prioritized
in #20020. Selection of default variants has been
tuned in #20182. With this setup there is no need
to have an ad-hoc rule for external packages. On
the contrary it should be removed to prefer having
default variant values over more external nodes in
the DAG.
2021-02-17 17:07:18 -08:00
Massimiliano Culpo
22d7937c50 concretizer: swap priority of selecting provider and default variant (#20182)
refers #20040

Before this PR optimization rules would have selected default
providers at a higher priority than default variants. Here we
swap this priority and we consider variants that are forced by
any means (root spec or spec in depends_on clause) the same as
if they were with a default value.

This prevents the solver from avoiding expected configurations
just because they contain directives like:

depends_on('pkg+foo')

and `+foo` is not the default variant value for pkg.
2021-02-17 17:07:18 -08:00
George Hartzell
96283867d6 Typos: add missing closing parens (#20174) 2021-02-17 17:07:17 -08:00
Massimiliano Culpo
d7ffdd76f6 concretizer: treat target ranges in directives correctly (#19988)
fixes #19981

This commit adds support for target ranges in directives,
for instance:

conflicts('+foo', when='target=x86_64:,aarch64:')

If any target in a spec body is not a known target the
following clause will be emitted:

node_target_satisfies(Package, TargetConstraint)

when traversing the spec and a definition of
the clause will then be printed at the end similarly
to what is done for package and compiler versions.
2021-02-17 17:07:17 -08:00
Massimiliano Culpo
b326d59e10 concretizer: prioritize matching compilers over newer versions (#20020)
fixes #20019

Before this modification having a newer version of a node came
at higher priority in the optimization than having matching
compilers. This could result in unexpected configurations for
packages with conflict directives on compilers of the type:

conflicts('%gcc@X.Y:', when='@:A.B')

where changing the compiler for just that node is preferred to
lower the node version to less than 'A.B'. Now the priority has
been switched so the solver will try to lower the version of the
nodes in question before changing their compiler.
2021-02-17 17:07:16 -08:00
Massimiliano Culpo
0ae49821e2 concretizer: allow a bool to be passed as argument for tests dependencies (#20082)
refers #20079

Added docstrings to 'concretize' and 'concretized' to
document the format for tests.

Added tests for the activation of test dependencies.
2021-02-17 17:07:16 -08:00
Massimiliano Culpo
8e1b5f734f concretizer: treat conditional providers correctly (#20086)
refers #20040

This modification emits rules like:

provides_virtual("netlib-lapack","blas") :- variant_value("netlib-lapack","external-blas","False").

for packages that provide virtual dependencies conditionally instead
of a fact that doesn't account for the condition.
2021-02-17 17:07:16 -08:00
Adam J. Stewart
ad84351c43 Docs: remove duplication in Command Reference (#20021) 2021-02-17 17:07:15 -08:00
Martin Aumüller
508534aad9 recognize macOS 11.1 as big sur (#20038)
Big Sur versions go 11.0, 11.0.1, 11.1 (vs. prior versions that
only used the minor component)

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-02-17 17:07:15 -08:00
Adam J. Stewart
cda34ba20a py-ipykernel: fix bug in phase method (#19986)
* py-ipykernel: fix bug in phase method

* Fix bug in executable calling
2021-02-17 17:07:15 -08:00
Greg Becker
38cf4f9fc2 fix error handling for spack test results command (#19987) 2021-02-17 17:07:14 -08:00
Danny Taller
c42ce439e4 hip support for umpire, chai, raja, camp (#19715)
* create HipPackage base class and do some refactoring

* comments and added conflict to raja for openmp with hip
2021-02-17 17:07:14 -08:00
Axel Huebl
d6bd95db2e py-ipykernel: fix install (#19617)
There is a post-install routine in `ipykernel` that needs to be
called for proper registration with jupyter.
2021-02-17 17:07:14 -08:00
Todd Gamblin
77d9acb071 update CHANGELOG.md for v0.16.0 2020-11-18 04:22:09 -08:00
Todd Gamblin
82383093ee bump version number to 0.16.0 2020-11-18 04:22:09 -08:00
Massimiliano Culpo
532fc40e94
clingo: add master branch version (#19958)
* updated @master to point to the master branch
* also added a @spack that points to a fixed commit
2020-11-18 04:21:55 -08:00
Michael Kuhn
20367e472d
cmd: add spack mark command (#16662)
This adds a new `mark` command that can be used to mark packages as either
explicitly or implicitly installed. Apart from fixing the package
database after installing a dependency manually, it can be used to
implement upgrade workflows as outlined in #13385.

The following commands demonstrate how the `mark` and `gc` commands can be
used to only keep the current version of a package installed:
```console
$ spack install pkgA
$ spack install pkgB
$ git pull # Imagine new versions for pkgA and/or pkgB are introduced
$ spack mark -i -a
$ spack install pkgA
$ spack install pkgB
$ spack gc
```

If there is no new version for a package, `install` will simply mark it as
explicitly installed and `gc` will not remove it.

Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-11-18 03:20:56 -08:00
Greg Becker
77b2e578ec
spack test (#15702)
Users can add test() methods to their packages to run smoke tests on
installations with the new `spack test` command (the old `spack test` is
now `spack unit-test`). spack test is environment-aware, so you can
`spack install` an environment and then run `spack test run` to run smoke
tests on all of its packages. Historical test logs can be perused with
`spack test results`. Generic smoke tests for MPI implementations, C,
C++, and Fortran compilers as well as specific smoke tests for 18
packages.

Inside the test method, individual tests can be run separately (and
continue to run best-effort after a test failure) using the `run_test`
method. The `run_test` method encapsulates finding test executables,
running and checking return codes, checking output, and error handling.

This handles the following trickier aspects of testing with direct
support in Spack's package API:

- [x] Caching source or intermediate build files at build time for
      use at test time.
- [x] Test dependencies,
- [x] packages that require a compiler for testing (such as library only
      packages).

See the packaging guide for more details on using Spack testing support.
Included is support for package.py files for virtual packages. This does
not change the Spack interface, but is a major change in internals.

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
Co-authored-by: wspear <wjspear@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-18 02:39:02 -08:00
sameershende
b81bbfb6e9
Added -level_zero -rocm -opencl flags and sha256 for TAU v2.30. (#19962)
* Added -level_zero -rocm -opencl flags and sha256 for TAU v2.30.

* Removed the depends_on clause for OpenCL and added a variant for OneAPI level_zero.

* remove depends_on rocm

* remove depends_on rocprofiler

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2020-11-17 19:09:24 -08:00
Massimiliano Culpo
89181f253b Improve warning message for deprecated attributes in "packages.yaml"
The deprecatedProperties custom validator now can accept a function
to compute a better error message.

Improve error/warning message for deprecated properties
2020-11-17 17:34:27 -08:00
Peter Scheibel
c9ad2affcc
Documentation: spack load/environments prefix inspections (#19961)
As of #18260, `spack load` and `spack env activate` now use
`prefix_inspections` from the modules configuration to decide
how to modify environment variables.

This updates the modules configuration documentation to describe
how to update environment variables with the `prefix_inspections`
section. This also updates the `spack load` and environments
documentation to refer to the new `prefix_inspections` documentation.
2020-11-17 15:24:00 -08:00
Dr. Christian Tacke
d65f078f66
spack load/environments: allow customization of prefix inspections (#18260)
`spack load` and `spack env activate` now use the prefix inspections
defined in `modules.yaml`. This allows users to customize/override
environment variable modifications if desired.

If no `prefix_inspections` configuration is present, Spack uses the
values in the default configuration.
2020-11-17 14:04:13 -08:00
Massimiliano Culpo
5f636fc317
spack containerize: allow users to customize the base image (#15028)
This PR reworks a few attributes in the container subsection of
spack.yaml to permit the injection of custom base images when
generating containers with Spack. In more detail, users can still
specify the base operating system and Spack version they want to use:

  spack:
    container:
      images:
        os: ubuntu:18.04
        spack: develop

in which case the generated recipe will use one of the Spack images
built on Docker Hub for the build stage and the base OS image in the
final stage. Alternatively, they can specify explicitly the two
base images:

  spack:
    container:
      images:
        build: spack/ubuntu-bionic:latest
        final: ubuntu:18.04

and it will be up to them to ensure their consistency.

Additional changes:

* This commit adds documentation on the two approaches.
* Users can now specify OS packages to install (e.g. with apt or yum)
  prior to the build (previously this was only available for the
  finalized image).
* Handles to avoid an update of the available system packages have been
  added to the configuration to facilitate the generation of recipes
  permitting deterministic builds.
2020-11-17 11:25:13 -08:00
Massimiliano Culpo
7ffad278d3 concretizer: modified weights for providers and matching for externals
This commit address the case of concretizing a root spec with a
transitive conditional dependency on a virtual package, provided
by an external. Before these modifications default variant values
for the dependency bringing in the virtual package were not
respected, and the external package providing the virtual was added
to the DAG.

The issue stems from two facts:
- Selecting a provider has higher precedence than selecting default variants
- To ensure that an external is preferred, we used a negative weight

To solve it we shift all the providers weight so that:
- External providers have a weight of 0
- Non external provider have a weight of 10 or more

Using a weight of zero for external providers is such that having
an external provider, if present, or not having a provider at all
has the same effect on the higher priority minimization.

Also fixed a few minor bugs in concretize.lp, that were causing
spurious entries in the final answer set.

Cleaned concretize.lp from leftover rules.
2020-11-17 10:04:13 -08:00
Massimiliano Culpo
ca31f52be3 concretizer: maximize the number of default values used for a single variant
If a the default of a multi-valued variant is set to
multiple values either in package.py or in packages.yaml
we need to ensure that all the values are present in the
concretized spec.

Since each default value has a weight of 0 and the
variant value is set implicitly by the concretizer
we need to add a rule to maximize on the number of
default values that are used.
2020-11-17 10:04:13 -08:00
Massimiliano Culpo
9a03fd2834 concretizer: don't require a provider for virtual deps if spec is external
This commit introduces a new rule:

real_node(Package) :- not external(Package), node(Package).

that permits to distinguish between an external node and a
real node that shouldn't trim dependency. It solves the
case of concretizing ninja with an external Python.
2020-11-17 10:04:13 -08:00
Todd Gamblin
44aa94a210 concretizer: spec_clauses() shouldn't emit node_compiler_hard for rule bodies.
`node_compiler_hard()` means that something explicitly asked for a node's
compiler to be set -- i.e., it's not inherited, it's required. We're
generating this in spec_clauses even for specs in rule bodies, which
results in conditions like this for optional dependencies:

In py-torch/package.py:

    depends_on('llvm-openmp', when='%apple-clang +openmp')

In the generated ASP:

    declared_dependency("py-torch","llvm-openmp","build")
      :- node("py-torch"),
         variant_value("py-torch","openmp","True"),
         node_compiler("py-torch","apple-clang"),
         node_compiler_hard("py-torch","apple-clang"),
         node_compiler_version_satisfies("py-torch","apple-clang",":").

The `node_compiler_hard` there means we would have to *explicitly* set
py-torch's compiler to trigger the llvm-openmp dependency, rather than
just letting it be set by preferences. This is wrong; the dependency
should be there regardless of how the compiler was set.

- [x] remove fn.node_compiler_hard() call from spec_clauses when
      generating rule body clauses.
2020-11-17 10:04:13 -08:00
Todd Gamblin
0620d954f5 concretizer: don't generate rules for empty version lists
If the version list passed to one_of_iff is empty, it still generates a
rule like this:

    node_compiler_version_satisfies("fujitsu-mpi", "arm", ":") :- 1 {  } 1.
    1 {  } 1 :- node_compiler_version_satisfies("fujitsu-mpi", "arm", ":").

The cardinality rules on the right and left above are never
satisfiale, and these rules do nothing.

- [x] Skip generating any rules at all for empty version lists.
2020-11-17 10:04:13 -08:00
Massimiliano Culpo
2231dfc898 concretizer: add a rule to avoid cycles in the graph of dependencies 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
522be6cadf External packages have a consistent hash across different concretizers 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
5c5a44988e Don't fail if MV variants have a tuple as default value 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
1b0338befb Fixup for target preferences 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
e0ae60edc4 Added unit tests to for regressions on open concretizer bugs 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
63327d1eea Changed clingo options 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
577676106c Reworked optimization rules 2020-11-17 10:04:13 -08:00
Massimiliano Culpo
6baa8157c7 concretizer: set target preference for inheritance from root 2020-11-17 10:04:13 -08:00