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1817 commits

Author SHA1 Message Date
Robert.French
ff3e56cf9a Import which from spack.util.executable; Fixes #1095 2016-06-22 15:25:32 +00:00
alalazo
f29b55957a documentation : removed references to never implemented features 2016-06-22 17:08:02 +02:00
Todd Gamblin
58cff1290d Make environment test less sensitive to user config files. 2016-06-21 00:19:28 -07:00
Todd Gamblin
0521b9bb32 Fix merge error. 2016-06-21 00:08:12 -07:00
Todd Gamblin
f18e1a9371 Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera 2016-06-20 23:53:48 -07:00
Todd Gamblin
3f90fee614 Merge pull request #1085 from NERSC/bugfix/compiler_find 
Bugfix/compiler find and gfortran fix.
 2016-06-20 23:46:13 -07:00
Todd Gamblin
70a25c4587 Change --insensitive to --sensitive in spack list 2016-06-20 17:17:25 -07:00
Todd Gamblin
cbd5a0a6e3 Merge branch 'list-ext' of https://github.com/trws/spack into trws-list-ext 2016-06-20 17:13:32 -07:00
Todd Gamblin
db81a74d66 Merge pull request #939 from davydden/docs/blas_lapack 
document blas and lapack usage in packages
 2016-06-20 17:11:09 -07:00
Todd Gamblin
a3431c5a73 Merge pull request #1047 from epfl-scitas/source_diffs_in_environment_modifications 
feature : construct environment modifications sourcing files
 2016-06-20 16:56:30 -07:00
Mario Melara
d515877d91 Add init_config args in compilers/__init__ 2016-06-20 16:20:52 -07:00
Mario Melara
4c4f3e9747 Add init_config to compiler_find method 2016-06-20 16:20:33 -07:00
alalazo
5aa3131385 qa : fixed flake8 issues 2016-06-20 21:11:33 +02:00
alalazo
b86e3047f3 openmpi : revert part of #1079 (OpenMPI can be built without fortran) 
Building OpenMPI without fortran is possible, and was already handled.
 Raising an install error we effectively renounce at clang+OpenMPI.

 build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found
 2016-06-20 20:46:11 +02:00
Tom Scogland
45482187b4 one more typo issue 2016-06-20 11:42:35 -07:00
Tom Scogland
f6aa864bc4 adding quotes to make sure the glob is interpreted correctly 2016-06-20 11:41:36 -07:00
Tom Scogland
ac728d3e60 fixing capitol->capital typos 2016-06-20 11:38:39 -07:00
Tom Scogland
6180e6c047 automatic case-insensitive like smartsearch, docs 
New documentation for the new options, also case insensitive by default
unless the user includes an upper-case character in their pattern.
 2016-06-20 11:33:56 -07:00
Mario Melara
6fb7b0fcf7 Merge branch 'develop' of https://github.com/LLNL/spack into bugfix/compiler_find 
Forgot to pull branch changes before
 2016-06-20 10:59:28 -07:00
Mario Melara
88888f5ba0 Got rid of unnecessary module arg 2016-06-20 10:58:20 -07:00
Mario Melara
1303b5a6a9 Adding more init_config as args to all_compilers,all_compilers_config, and get_compiler_config 2016-06-20 10:57:58 -07:00
Mario Melara
fe30113502 Adding init_config back. Don't initalize config rather let compiler_find do all the work. spack compiler list and spack compilers can do the work 2016-06-20 10:57:10 -07:00
Tom Scogland
0377f3580b switching argument naming 2016-06-20 10:53:19 -07:00
Adam J. Stewart
aa86488fd9 Flake8 2016-06-20 12:47:17 -05:00
Todd Gamblin
42ff1aaa75 Merge pull request #1064 from LLNL/bugfix/github-1043-script-backup 
do not create shebang.bak file
 2016-06-20 10:45:42 -07:00
Todd Gamblin
c09111bbef Merge pull request #1053 from davydden/pkg/dealii_suite_update 
update Petsc, Slepc, Trilinos, Superlu-dist and deal.II
 2016-06-20 10:32:52 -07:00
Adam J. Stewart
be407f531e Move around extension logic 2016-06-20 12:24:45 -05:00
Adam J. Stewart
28b2e36230 Add ctest executable 2016-06-20 12:24:45 -05:00
Adam J. Stewart
afff40e584 Flake8 fix for R templates 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5dfc2052bd Flake8 change 2016-06-20 12:24:45 -05:00
Adam J. Stewart
98d03c74e1 Add support for less common compression schemes 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5a55bb3f8d Modify R installation template 2016-06-20 12:24:45 -05:00
Adam J. Stewart
79fae306f6 Add extensions for Python/R and more configurable install 2016-06-20 12:24:45 -05:00
Adam J. Stewart
9500f2718b More Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
a21e845ce7 Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
2220784eda Add scons support, .zip support, and Cantera package 2016-06-20 12:24:45 -05:00
Peter Scheibel
1dc62e8a19 Merge branch 'develop' into features/cache-archives 2016-06-20 10:16:02 -07:00
Todd Gamblin
ce105e9bbe Merge branch 'bugfix/compiler_find' into develop 2016-06-20 09:34:25 -07:00
Todd Gamblin
84e21703bd Test no longer assumes compilers exist in /usr. 
- makes a fake gcc instead, and tests that.
 2016-06-20 09:28:39 -07:00
Mario Melara
64c83638ff Adding test to list of test_names 2016-06-18 11:11:46 -07:00
Mario Melara
15e6b88a8b Adding new tests for compiler command for spack's test suite 2016-06-18 10:51:38 -07:00
Mario Melara
36275f8e6e More clean up of init_config, also no need for a different find_compilers function. 2016-06-18 10:50:55 -07:00
Mario Melara
ccb62b4620 Getting rid of no longer used init_config arg 2016-06-18 10:49:39 -07:00
Todd Gamblin
f9efb746d7 Merge pull request #1032 from eschnett/eschnett/cc-quotes 
Add quotes around file name
 2016-06-18 08:57:18 -07:00
alalazo
9e0c20c794 environment : filter the current environment 
Previously only the environment obtained after sourcing the file was filtered.
This caused the appeareance of spurious unset commands in the list.
 2016-06-18 13:39:08 +02:00
alalazo
a17d1efe7c Merge branch 'develop' of https://github.com/LLNL/spack into features/source_diffs_in_environment_modifications 
Conflicts:
	lib/spack/spack/test/environment.py
 2016-06-18 13:31:29 +02:00
alalazo
670669ef80 qa : fixed flake8 issues 2016-06-18 13:10:35 +02:00
alalazo
a33077b77f unit tests : fixed test_alter_environment 2016-06-18 13:07:14 +02:00
alalazo
51cf847647 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_file_explicit_load 
Conflicts:
	lib/spack/spack/test/modules.py
 2016-06-18 13:06:37 +02:00
Mario Melara
8af1c5fc8f Merge remote-tracking branch 'upstream/develop' into develop 
"Updating NERSC branch"
 2016-06-18 00:52:06 -07:00
Mario Melara
c703bfb54d Got rid of init_config flag since we don't need it. Instead we update the cache config if there are any changes 2016-06-18 00:48:08 -07:00
Todd Gamblin
4569df025e Merge pull request #1060 from mathstuf/no-break-long-words 
tty: do not break long words
 2016-06-17 14:51:26 -07:00
Todd Gamblin
d7f48e1ff0 Merge pull request #1061 from mathstuf/reindex-preserve-explicit 
reindex: preserve 'explicit' flags
 2016-06-17 14:29:47 -07:00
Todd Gamblin
0bbbfc2ef7 Merge pull request #946 from LLNL/features/intel2 
Intel software packages and license enhancements
 2016-06-17 14:28:39 -07:00
Tom Scogland
8770f2a0ea fixing last flake8 issue 2016-06-17 13:42:27 -07:00
Tom Scogland
0743ef4d0b fixing flake8 issues 2016-06-17 13:32:28 -07:00
Tom Scogland
a4ac99877a cmd/list: adding description search and glob by default 2016-06-17 12:00:35 -07:00
Mario Melara
fe5eec5230 'find and 'add' are options for adding compilers via command line 2016-06-17 09:16:03 -07:00
Mario Melara
df84fe0b58 Added init_config parameter so we don't initialize the config when user runs spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter. 2016-06-16 18:10:38 -07:00
Todd Gamblin
005827ab23 Replace 2.6-incompatible skipIf with a conditional. 
- skipIf doesn't work with Python 2.6.
 2016-06-16 12:12:29 -07:00
Todd Gamblin
f60ae61652 remove dead code, cleanup. 2016-06-16 10:44:15 -07:00
Todd Gamblin
8867adf942 simplify instance check. 2016-06-16 10:43:36 -07:00
Todd Gamblin
c7dfa1699a rename Mac OS X to macos 2016-06-16 10:43:12 -07:00
Mario Melara
6b03770602 Added str method to mac_osx so that whenever we try to access darwins different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not. 2016-06-16 09:44:37 -07:00
Todd Gamblin
88b73bacdb Merge branch 'features/newarch' into develop 
Conflicts:
	lib/spack/spack/config.py
	var/spack/repos/builtin/packages/lua/package.py
 2016-06-16 03:03:26 -07:00
Todd Gamblin
17b868381f Fixes #460: Do not show variants by default in spack find. 
This does two things:

1. By default `spack find` no longer shows variants.  You have to
   supply `-v` to get that

2. This improves the `colify` implementation so that it no longer pads
   the rightmost column.  This avoids the issue where if one spec was
   too long in the output, *all* specs would have space padding added
   to that width, and it would look like the output of `spack find`
   was double spaced.  This no longer happens -- the one bad line
   wraps around and the other lines are now single-spaced when you use
   `-v` with boost.
 2016-06-16 02:55:33 -07:00
Todd Gamblin
88b671f8b1 Just call old os "unknown" 2016-06-16 02:06:19 -07:00
Todd Gamblin
f3d6818d5c be more tolerant when parsing new specs. 2016-06-16 00:55:39 -07:00
Todd Gamblin
c90cc465f5 Add __contains__ to arch to satsify old packages. 2016-06-16 00:54:59 -07:00
Gregory L. Lee
d4df4375d5 removed unused import per flake8 report 2016-06-15 20:32:08 -07:00
Gregory L. Lee
1724ff5658 do not create shebang.bak file 2016-06-15 20:21:02 -07:00
Gregory Becker
3fcd54203c two minor fixes 2016-06-15 16:44:38 -07:00
Gregory Becker
2fc9ac4036 Two minor fixes 2016-06-15 16:39:39 -07:00
Ben Boeckel
716f12dd58 reindex: preserve 'explicit' flags 
Look up in the old database whether the spec was explicit or not and
preserve it into the new database.

Fixes #1050.
 2016-06-15 12:48:40 -04:00
Denis Davydov
3d3a26cd9a flake8 fixes for filesystem.py 2016-06-15 18:31:10 +02:00
Ben Boeckel
36decbfa69 tty: do not break long words 
These "words" tend to be file paths which are best left unbroken.

Fixes #1057.
 2016-06-15 12:22:35 -04:00
Denis Davydov
a860a3d614 superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version 2016-06-15 18:21:13 +02:00
Massimiliano Culpo
30c9d976f6 environment : added more logic to treat append and prepend path 2016-06-12 18:54:56 +02:00
alalazo
5300ffac7f qa : fixed flak8 checks 2016-06-12 15:11:26 +02:00
alalazo
a6681f2d7f environment modules : added function to construct them from source files 2016-06-12 15:06:17 +02:00
alalazo
3737169450 qa : fixed style and a bug reported by flake8 
lib/spack/spack/test/versions.py:313: [F811] redefinition of unused 'test_union_with_containment' from line 306
Flake8 found errors.
 2016-06-11 12:57:46 +02:00
alalazo
eb9b00b210 versions : added unit tests for the new properties 2016-06-11 12:44:21 +02:00
Gregory Becker
0fea167f97 I made a hash of that minor merge 
Merge commit '4eeb' into features/newarch
 2016-06-10 16:28:09 -07:00
Gregory Becker
992bcac794 changed compiler yaml format 2016-06-10 16:26:02 -07:00
Erik Schnetter
2a4d440003 Add quotes around file name 
$input_log will expand to file names with special characters (e.g. "@"), thus bash requires quotes.
 2016-06-08 19:14:01 -04:00
Orion Poplawski
7ce08c4216 Remove last two remaining from external imports 2016-06-08 13:51:31 -06:00
Peter Scheibel
3b71d78f3c rename URLMirrorFetchStrategy to CacheURLFetchStrategy since it isnt used to manage all mirror URLs - just the cache (the specific behavior that a URL may refer to a stale resource doesn't necessarily apply to mirrors) 2016-06-08 09:57:56 -07:00
alalazo
564483936f qa : fixed flake8 issues 2016-06-08 16:33:49 +02:00
alalazo
f4a39457de lmod : updated package and dependencies 2016-06-08 15:35:15 +02:00
Peter Scheibel
a2754894ea (1) FsCache store now takes a fetcher vs. just a copy command (2) use [1] to conditionally cache resource: only save it if there is a feature which identifies it uniquely (for example do not cache a repository if it pulls the latest state vs. a particular tag/commit) 2016-06-07 16:26:54 -07:00
Mario Melara
5715799d4e Added to_dict back into operating system 2016-06-07 14:15:28 -07:00
Mario Melara
4925be0bc4 Load external modules 2016-06-07 13:22:47 -07:00
Peter Scheibel
de1ec4be8b change source archive caching to omit digest from name and instead calculate and compare the checksum. This achieves the original goal of discarding stale cache files without preserving multiple files for the same version. 2016-06-06 12:26:13 -07:00
Mario Melara
196737c217 Changed to passing full architecture spec to function rather than just platform_os so we can grab the operating system from the platform getters 2016-06-06 10:29:19 -07:00
Mario Melara
835982faed Changed OS name to CNL10 so that we properly find the compilers for the test platform 2016-06-06 09:08:59 -07:00
Mario Melara
864191b6ed Got rid of unnecessary global keyword 2016-06-06 09:06:58 -07:00
Mario Melara
5b023bb0a1 Passing through full arch instead of just operating sysystem so that we can use the platform to get the operating system 2016-06-06 09:05:14 -07:00
Mario Melara
c7b48f6fef Passing full arch for proper compiler spec so that we can use the platform to get the operating system 2016-06-06 09:04:24 -07:00
Mario Melara
f751d68177 Passing architecture to functions to find compiler. We can use the platform name if provided to find the operating system. Also changed error to operating system instead of target since operating system is now in charge of compiler finding. 2016-06-06 09:03:32 -07:00
Tom Scogland
30e8e77fb6 Merge pull request #869 from brettviren/feature/views 
Feature/views
 2016-06-05 11:31:48 -07:00
alalazo
bdd874eb7f autopep8 2016-06-04 18:09:28 +02:00
alalazo
02cadb882b unit test : suffixes 2016-06-04 18:09:06 +02:00
alalazo
669caefccb unit test : wrong naming scheme in conflict 2016-06-04 18:00:18 +02:00
alalazo
d43cfefa43 autopep8 2016-06-04 17:24:52 +02:00
alalazo
2d6db06fca unit test : prerequisites 2016-06-04 17:24:27 +02:00
alalazo
ffa6fed3a3 unit test : custom module file load 2016-06-04 17:20:06 +02:00
alalazo
422d3d4db6 unit test : write a whitelisted module 2016-06-04 16:46:15 +02:00
alalazo
09b1daa7b9 unit test : write a blacklisted module 2016-06-04 16:23:41 +02:00
alalazo
408aa10210 unit test : whitelist 2016-06-04 16:18:15 +02:00
alalazo
a3f39c2315 autopep8 : fixed style issues 2016-06-04 11:23:23 +02:00
alalazo
97e2834816 unit test : wrong tag for dependencies 2016-06-04 11:20:35 +02:00
alalazo
2207ab8f23 unit test : inspect_path 2016-06-04 10:44:37 +02:00
alalazo
0e71b5dde8 unit test : update dictionary extending lists 2016-06-04 10:07:13 +02:00
Mario Melara
30c204a0a5 Made a merge commit earlier with Todd fixing all_platforms, but changed how architecture looks in spec.yaml. Just three strings. Also made some flake8 formatting changes 2016-06-03 16:16:59 -07:00
Mario Melara
bc557cc765 Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-06-03 15:59:00 -07:00
Mario Melara
24d160e93e Changed how architecture looks like in spec.yaml. Now it's only three strings, platform, os, target in spec.yaml. Also did some flake8 formatting changes 2016-06-03 15:57:54 -07:00
Todd Gamblin
9d04dccb79 Update version to correspond to master. 2016-06-02 01:20:40 -07:00
Gregory Becker
817f43f927 Fixed config format to allow default compiler flags 2016-05-31 13:39:25 -07:00
Todd Gamblin
7bdf63a0fa Fix some bugs in architecture. 2016-05-31 03:01:05 -07:00
Todd Gamblin
24ee32d7b0 More flexible reading of specs from DB, formatting. 2016-05-30 22:02:22 -07:00
Todd Gamblin
f3f0122f11 Merge branch 'develop' into features/newarch 2016-05-30 13:54:53 -07:00
Mario Melara
b14ba31250 Quick fix for mock compilers.yaml to work on linux machines. 2016-05-30 13:22:08 -07:00
Mario Melara
716991775d Added extra check on linux machines, since most linux machines don't have module system 2016-05-30 13:09:41 -07:00
Mario Melara
08a9d80ebc Changed platform to py_platform to avoid name collisions. The naming collisions resulted in an error on linux machines 2016-05-30 13:07:20 -07:00
Mario Melara
f96c979024 Added a conditional to check if package is external 2016-05-30 13:05:49 -07:00
Todd Gamblin
e8b4d5fb6f Performance boost: reduce instantiations of re.Scanner 
- Lexer is the same for every Spec parser in spack, so don't build it
  every time.

- This improves time to import package.py files a lot, as a Lexer
  doesn't have to be constructed for every spc in the packages.

- To concretize dealii:
  - Before: ~20 sec
  - After:  ~6 sec
 2016-05-28 23:05:23 -07:00
Mario Melara
22ca72e7b9 Added conditional skipIf to test_external_modules, darwin machines don't have tcl modules so skip this test and let user know why 2016-05-28 12:40:29 -07:00
Mario Melara
69585cb6e3 Added elcap compilers 2016-05-28 12:39:43 -07:00
Mario Melara
f0a9c45207 Adding external to mock config 2016-05-28 10:13:57 -07:00
Mario Melara
98a4a9f2cc Adding test for external modules 2016-05-28 10:13:22 -07:00
Mario Melara
becec8ac7e Added external module check in normalize to avoid infinite loop 2016-05-28 10:12:53 -07:00
Gregory Becker
9dad7c2ace re-merged mainline develop 2016-05-27 13:13:19 -07:00
Gregory Becker
f49644cdea Fixed typo in linux platform 2016-05-27 12:37:58 -07:00
Gregory Becker
023504ed64 Fixed the external modules bug 2016-05-27 12:26:59 -07:00
Todd Gamblin
285646bbfa Merge pull request #981 from epfl-scitas/tests/unit_test_for_968 
find : add unit tests
 2016-05-27 11:00:45 -05:00
Todd Gamblin
2f18a34458 Merge pull request #989 from LLNL/features/cflags-documentation 
updated documentation for cflags PR
 2016-05-27 10:59:40 -05:00
Gregory Becker
a2f90453f4 Fixed backwards compatibility for compilers.yaml config file 2016-05-26 20:30:05 -07:00
Mario Melara
9c1da4fa4c Corrected parantheses wrapping 2016-05-26 13:58:17 -07:00
Gregory Becker
189e8b3f34 fixed compiler config init logic 2016-05-26 13:17:01 -07:00
Gregory Becker
88bec814eb Allow 'arch=' syntax for specs to allow copying from output 2016-05-26 12:10:41 -07:00
Gregory Becker
c0661744cc fixed compatibility work 2016-05-26 11:38:40 -07:00
Gregory Becker
b968603a57 made yaml format backwards compatible 2016-05-26 11:14:05 -07:00
Mario Melara
3b675d8b70 Changed comparison operator so that we don't get caught in an infinite loop 2016-05-26 11:09:14 -07:00
Gregory Becker
c30fe932d9 fixed mock config to use truncated versions of linux distro versions 2016-05-25 16:34:45 -07:00
Gregory Becker
8f99334f11 Fixed test config to work on yosemite 2016-05-25 16:06:14 -07:00
Todd Gamblin
76d42b5200 Merge pull request #982 from trws/rust 
Rust
 2016-05-25 15:15:51 -05:00
Gregory Becker
0f40174723 added test platform 2016-05-25 12:28:59 -07:00
Gregory Becker
3a68dd2011 (hopefully) final fixes of the merge 2016-05-25 12:22:16 -07:00
Gregory Becker
74dc7ffe4d updated documentation for cflags PR 2016-05-25 10:56:12 -07:00
Peter Scheibel
dd26c0bbcc merge from develop 2016-05-24 18:56:44 -07:00
alalazo
84707ed926 modules : it's possible to add suffixes to module files based on constraint 2016-05-24 15:23:52 +02:00
Gregory Becker
513aae5ef8 fixed bug where earlier test was blowing away environment, causing an error on which('modulecmd') 2016-05-23 17:39:06 -07:00
Gregory Becker
1da6bbd146 Fixed a couple more bugs 2016-05-23 17:25:54 -07:00
Gregory Becker
d438ea0880 'Ugly merge because I mishandled git 
Merge branch 'save' into features/newarch
 2016-05-23 16:57:54 -07:00
Gregory Becker
d7612e7aaa Fixed errors caught by spec and concretize tests 2016-05-23 16:54:41 -07:00
Mario Melara
6c352132d0 Started writing documentation for architecture. Might need a couple more drafts 2016-05-23 14:28:00 -07:00
alalazo
0890ac4507 modules : explicit module file load from configuration files 2016-05-23 10:54:48 +02:00
Todd Gamblin
3ab56a188e Fixes #980: really slow spack spec performance 
- `spack spec dealii` now takse seconds rather than 18 minutes.

- Slow hash (`dag_hash`) was accidentally inserted into the fast hash
  (`__hash__`).

- Do not put the slow hash in the fast hash.
 2016-05-22 18:33:13 -07:00
Tom Scogland
9bd4bc02d6 fixing warning for package fetch 2016-05-22 11:16:00 -07:00
Todd Gamblin
d087086581 update documentation. 2016-05-21 14:33:05 -07:00
Mario Melara
c3767d593d compiler list is sorted in descending order, in order to get most up to date version we check from the beginning of the list 2016-05-20 15:48:13 -07:00
alalazo
7303c387e8 autopep8 : fixed style 2016-05-20 10:34:11 +02:00
alalazo
b485ca8198 find : added unit tests, exits with 1 if -E and -e are given 2016-05-20 10:32:46 +02:00
Mario Melara
175a042fd3 Changed rpaths method so that it only grabs rpaths using the compiler module name instead of PrgEnv-x module name 2016-05-19 16:42:13 -07:00
Mario Melara
36450b9bc9 Adding link_paths to craype compilers 2016-05-19 14:25:50 -07:00
Gregory Becker
19c8a52fe1 fixed spec syntax test 2016-05-19 09:53:49 -07:00
Brett Viren
126fc10b9d Remove view print for now. 2016-05-19 08:36:18 -06:00
Gregory Becker
63459ab0c7 Fixed some of the bugs 2016-05-18 18:21:52 -07:00
Gregory Becker
01d5ffcd87 Fixed the first set of merge bugs 2016-05-18 17:42:11 -07:00
Mario Melara
16431f7a4c Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-05-18 17:26:30 -07:00
Mario Melara
b25da51638 Changed unsatisfiable architecture test 2016-05-18 17:26:06 -07:00
Mario Melara
6926f4d0da Changed arch tests to new spec target= os= 2016-05-18 17:23:10 -07:00
Gregory Becker
5417f1cdc6 more merge work 2016-05-18 17:21:03 -07:00
Gregory Becker
b1e5eafb80 more merge work 2016-05-18 17:18:26 -07:00
Gregory Becker
deb5011d08 more merge work 2016-05-18 17:14:16 -07:00
Mario Melara
b4b7942230 Moved searching of flags into get compilers in compilers_for_spec 2016-05-18 17:07:23 -07:00
Mario Melara
9f8ff32bcc Got rid of ifdefs, changed parameters for Compiler: added kwargs 2016-05-18 17:05:11 -07:00
Mario Melara
faa0f2a13c got rid of ifdef 2016-05-18 17:01:59 -07:00
Gregory Becker
80310a3b7c Finished merge on these files 2016-05-18 16:50:50 -07:00
Gregory Becker
9f59c128be Partial merge of mainline develop 2016-05-18 15:13:40 -07:00
Tom Scogland
a1f8cc2817 peren-nesting fix in spec 2016-05-18 14:24:16 -07:00
Tom Scogland
29635b7bbd initial docs for find and flake8 cleanup 2016-05-18 14:04:39 -07:00
alalazo
23c7089789 fixes #967, flake8 approved 2016-05-18 11:52:27 +02:00
alalazo
fcc30cbf30 fixes #967 2016-05-18 11:48:03 +02:00
Todd Gamblin
502420ceff Merge branch 'features/cflags' into develop 
Conflicts:
	lib/spack/spack/cmd/find.py
	var/spack/repos/builtin/packages/ghostscript/package.py
 2016-05-17 16:44:54 -07:00
Todd Gamblin
9d584d0c47 Tag Spack version 0.9 
- Tagging a version to include all that's happened since 0.8.17

- This is in anticipation of merging `features/cflags` and
  `features/newarch`, which will break the spec format.

- 1.0 will likely come after those.
 2016-05-17 16:06:43 -07:00
Todd Gamblin
15e9d5f96e Merge pull request #868 from trws/explicitly-installed 
track whether a package was installed "explicitly"
 2016-05-17 14:28:17 -07:00
Todd Gamblin
138307dd0c Merge pull request #955 from trws/lua-rework 
complete lua rework
 2016-05-17 13:21:51 -07:00
Erik Schnetter
fcc4c1b2f2 Remove duplicate providers that can concretize to the same result 
Patch generously provided by @becker33.

Closes #928.
 2016-05-17 15:13:28 -04:00
Gregory Becker
0fd9cdb861 Fixed config tests for new compiler config format 2016-05-16 09:56:07 -07:00
Gregory Becker
7705603f73 Added more compilers to mock packages tests 2016-05-16 09:43:46 -07:00
Tom Scogland
8859a09cd2 handle explicit when requesting to install already installed packages 2016-05-16 08:08:40 -07:00
Tom Scogland
4acdfeae61 track whether a package was installed "explicitly" 
Adds a new attribute in the database to track whether a package was
installed explicitly or not, where explicitly is the user running `spack
install <package>` and implicitly is it being installed as a dependency.
It also adds arguments to `spack find` to find these packages such that
it should be possible to query the packages that were installed
implicitly and are not currently depended upon any longer.
 2016-05-16 08:08:40 -07:00
Brett Viren
1bbe6409e1 Merge remote-tracking branch 'upstream/develop' into view-fix-merge 2016-05-16 10:09:31 -04:00
Brett Viren
77a34ebdf9 flake8-clean. 2016-05-16 10:08:59 -04:00
Tom Scogland
dacedfcc0e formatting to appease flake8 2016-05-16 05:12:30 -07:00
Tom Scogland
c6524d0311 environment: fixed comment and default separator 2016-05-15 09:50:21 -07:00
Tom Scogland
577657b3f7 go rework 
This commit includes:
* a new go package that uses gccgo to bootstrap the go toolchain
* env support added to Executable
* a new Go fetch strategy that uses `go get` to fetch a package and all
  of its deps
* A platinum searcher package that leverages the new go package and
  fetch strategy
 2016-05-14 22:35:55 -07:00
Tom Scogland
a2197f3a41 yet more sacrifices to the god of short-lines 2016-05-14 17:51:58 -07:00
Tom Scogland
df30182a10 appeasing flake8 in environment 2016-05-14 17:39:59 -07:00
Tom Scogland
12e36ee0e7 fix merge error 2016-05-14 16:20:45 -07:00
Tom Scogland
b5979b13e3 complete lua rework, also module path fix 
This is a complete rework of the lua package, it also allows the
environment modification classes to handle paths that are not separated
by colons, and uses the support for same in TCL modules as well.

The biggest difference is the handling for lua extension packages, which
now have their paths set correctly by the lua parent package, and have
access to both lua and luarocks as installation tools. See the luaposix
package for what should be required for most lua packages after this.
 2016-05-14 16:18:26 -07:00
Elizabeth Fischer
efa506b235 Preparing spack setup command for merge. Try this out for a while... 2016-05-14 17:09:11 -04:00
Brett Viren
b3ede099e2 Document command. 2016-05-14 13:15:25 -04:00
Brett Viren
c98afe2205 Pick a better name for the 'spec' parameters. 2016-05-14 13:14:51 -04:00
Brett Viren
8ddc1f8977 Move from str.format() to string.Template. 2016-05-14 09:11:04 -04:00
Gregory L. Lee
e9b71872a8 addressed PR#946 comments from @adamjstewart 2016-05-13 15:16:07 -07:00
Mario Melara
fce6ecb05c Changed _proper_compiler_spec to return filtered list. Apparently filter returns a list rather than filtering the original list. Lead to compiler finding problems if user specified frontend compilers 2016-05-13 15:04:06 -07:00
Gregory Becker
f43cab0951 fixed pkgconfig issue 2016-05-13 14:39:20 -07:00
Gregory L. Lee
b8a91db089 Intel software packages and license enhancements 2016-05-12 20:04:45 -07:00
Gregory Becker
4c9dd028d2 Fixed error causing hang in env/cc 2016-05-12 17:20:48 -07:00
Todd Gamblin
5e13bba068 Fix #941: add copyright to new package files. 
- also reworded the boilerplate a bit.
 2016-05-12 10:30:13 -07:00
Denis Davydov
68c681bb78 document blas and lapack usage in packages 2016-05-12 08:59:17 +02:00
Todd Gamblin
e7ced54369 Correct LLNL LGPL license template for clarity. 2016-05-11 21:22:25 -07:00
Todd Gamblin
14fe0b8ad2 Merge pull request #558 from adamjstewart/features/pgi 
Add Licensed Software Support
 2016-05-11 17:17:47 -07:00
Gregory Becker
45bf93405a Changed spec syntax for new parts from modules feature 2016-05-11 16:23:13 -07:00
Gregory Becker
2e1810e3a7 re-merging develop 2016-05-11 15:26:09 -07:00
Gregory Becker
566fec4015 Fixed variants in new format and removed print statements from debugging 2016-05-11 14:56:41 -07:00
Gregory Becker
0b5836cfce Fixed flipped conditional in satisfies 2016-05-11 10:51:52 -07:00
Adam J. Stewart
c043275f1b Final flake8 changes 2016-05-11 11:46:41 -05:00
Todd Gamblin
9cf5404bb7 Merge pull request #937 from davydden/features/unit_tests 
Features/package_test
 2016-05-11 09:42:00 -07:00
Adam J. Stewart
5879f8207f Flake8 formatting changes 2016-05-11 11:32:08 -05:00
Adam J. Stewart
ee7ec4fa66 Move all licensing support to pre/post_install hooks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
19f4b27fd2 Add documentation for packaging of licensed software 2016-05-11 11:32:08 -05:00
Adam J. Stewart
8bcb812529 Allow multiple license symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
2a11cb8b76 Use global licenses with local symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
6906911e85 Allow license files to use different symbols for comments 2016-05-11 11:32:08 -05:00
Adam J. Stewart
b63d11d5b0 Formatting consistency 2016-05-11 11:32:07 -05:00
Adam J. Stewart
5cb45c253e Bug fix 2016-05-11 11:32:07 -05:00
Adam J. Stewart
1b997f10a8 Add set_up_license function 2016-05-11 11:32:07 -05:00
Adam J. Stewart
8cba8d6d1d Add default global variables for licensing information 2016-05-11 11:29:30 -05:00
Todd Gamblin
fd5d89b61c Merge branch 'custom_modulefiles_from_config' of https://github.com/epfl-scitas/spack into epfl-scitas-custom_modulefiles_from_config 2016-05-11 08:59:23 -07:00
alalazo
bb4b6c8ee2 flake 8 : fixed checks 2016-05-11 17:02:36 +02:00
Denis Davydov
eba264fcd0 fix formatting 2016-05-11 16:11:34 +02:00
alalazo
78ae5d7723 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 
Conflicts:
	lib/spack/spack/config.py
 2016-05-11 16:11:19 +02:00
alalazo
22bb0562fe Revert "flake8 : fixed all issues?" 
This reverts commit 71e49e289a.
 2016-05-11 16:09:47 +02:00
alalazo
b215b19cae modules : added docs 2016-05-11 15:42:48 +02:00
Denis Davydov
809ded74c9 add functions for simple unit tests; refactor openblas to use them 2016-05-11 15:10:13 +02:00
Benedikt Hegner
0b7b25487f improve error message for wrong config section names 2016-05-11 13:29:27 +02:00
Todd Gamblin
6d6eb0f2d1 Remove config.py from flake checking for now. 2016-05-11 02:32:13 -07:00
Todd Gamblin
fc8d18ebdc Merge branch 'bugfix/config' of git://github.com/hegner/spack into hegner-bugfix/config 2016-05-11 02:31:20 -07:00
Todd Gamblin
9030541e4b Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages 
QA : make qa checking less painful
 2016-05-11 02:26:07 -07:00
Benedikt Hegner
c1e6b52184 first round of coding rules 2016-05-11 00:28:12 +02:00
Benedikt Hegner
05b6c3f8cf add test for list parameters 2016-05-11 00:14:24 +02:00
Benedikt Hegner
6e462abb4d hmm... test before commit 2016-05-10 23:31:29 +02:00
Benedikt Hegner
5d477bc956 fix setting config for list parameters 2016-05-10 23:19:30 +02:00
Todd Gamblin
98faee1d5c Minor tweaks to flock docs. 2016-05-10 11:19:17 -07:00
Todd Gamblin
a49662276d Merge branch 'fix-doc-flock' of git://github.com/luca-heltai/spack into luca-heltai-fix-doc-flock 2016-05-10 11:10:07 -07:00
Luca Heltai
4cb91d6f7b Added documentation on lockf/flock. 2016-05-10 19:46:24 +02:00
alalazo
7d74e209f3 qa : this should still fail due to F821 2016-05-10 19:20:26 +02:00