The r-devtools package was not installable due to a few issues.
- The rstudioapi spec was for 0.11.0 but the rstudioapi version is
actually 0.11. This caused an error during concretization.
- Set r-usethis to depend on rlang@0.4.3: rather than r-lang@0.4.3.
- Set r-usethis to depend on r-gh@1.1.0: rather than r-gh@1.1.0.
- Added version r-gh-1.1.0 as it is not currently present in spack.
* Added CUDAHOSTCXX variable needed to compile with cuda and mpi.
* Added guard for setting CUDAHOSTCXX with MPI.
* Acceptable working version of dealii+cuda+mpi.
* cpio: Fix issue compiling with newer intel compilers (#18854)
Do not add --no-gcc for recent intel compilers (e.g. 20.x)
* cpio: Remove --no-gcc flag for intel@19 as well as intel@20
Based on comments from @nrichart, removing --no-gcc option for intel@19
as well as intel@20
* Provide draco-7_8_0.
+ Also provide a patchfile for draco-7_6_0 to support CrayPE builds.
+ Version 7.8.0 has a new variant `+caliper`.
+ Sort dependencies alphabetically after grouping by required and optional.
* Remove patchfile that is no longer needed.
+ Newer versions of draco do not require this patch.
+ Older versions of draco are not supported for spectrum-mpi.
* Change new variant +caliper to default to False.
* pandoc: add variant for texlive
Modifies the pandoc package by adding a variant for texlive, which is only needed for PDF output. Enables this variant by default.
* Fix whitespace
Fix for #19095
When given +openmp, add the correct compiler openmp flag to the link
stage. This seems to be required for %intel compilers.
I do this for all compilers, not just %intel, because it does not seem
to harm anything and might be beneficial for others (and just seems
'correct').
* py-scikit-image: bump version
* address reviewer comments
* address reviewer comments
* address reviewer comments
* py-scikit-image : update dependencies : part 2
* cloudpicke is a docs only dependency, enable it with a variant if necessary
* address reviewer comments
* cleanup build vs run deps
* address reviewer comments
* Initial cut at FLCL spackage. Works with GCC so far.
* Update spackage to list release which supports spack. Add @agaspar as a maintainer. Default unit tests to disabled when building with spack.
* Change url to 0.2.
* Nope, 0.3.
* add package py-lmodule version 0.1.0
Lmodule is tested with lmod >= 7.x. Lmod 6 has different json
structure in spider which is not supported by lmodule
* py-charm4py: new package
Charm++ for python
Installation notes:
1) charm4py ships with its own charm++ tarball. It really wants
to use the version it ships with. It also builds charm++ in a special way to
produce libcharm.so (but not charmc, etc), so it does not seem
worthwhile to try to hack to build using a spack installed charmpp.
2) Originally, the installation was failing due to unresolved cuda
symbols when setup.py was doing a ctypes.CDLL of libcharm.so (in order
to verify version?). This appears to be due to the fact that
libcharm.so had undefined cuda symbols, but did not show libcudart.so as
a dependency (in e.g. ldd output). To fix this, I had to add
libcudart.so explicitly when linking libcharm.so, but since setup.py
untars a tarball to build libcharm, the solution was a tad convoluted:
2a) Add a patch in spack to py-charm4py which creates a patchfile
"spack-charm4py-setup.py.patch" which will modify a Makefile file (after it
is untarred) to add the flags in env var SPACK_CHARM4PY_EXTRALIBS to
the link command for libcharm.so
2b) The spack patch file also patches setup.py to run patch using the
aforementioned patchfile to patch the Makefile after it is untarred, and
sets the SPACK_CHARM4PY_EXTRALIBS variable appropriately in the setup
environment.
* Update var/spack/repos/builtin/packages/py-charm4py/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-charm4py/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-charm4py: flake8 fixes
remove useless import
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update Package, Pymol 2.4
* Fixed flake8 stuff
* more style fixes
* missing ( at EOF
* added py-pymol 2.3 back this
* extra line removal
* white space in empty line removal
* added libpng and py-pyqt5 to prefix_path
* Fix 'unexpected product version' error for macOS 11.0
* Adjustment: add the minimum version that this macOS patch is necessary.
* Adding a keyword to prevent the patch being applied to systems other than darwin (macOS)
* Deleting quotation marks
