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Author SHA1 Message Date
Andrew Gaspar
1e6da47b4e Kokkos package: pthreads feature and new kokkos versions (#10943) 2019-03-26 14:31:48 -05:00
Seth R. Johnson
844ca31894 Use 'shlex' to split default Executable arguments (#10929) 
This allows shell commands for `spack edit` to be executed correctly if
they have quoted arguments.
 2019-03-26 14:02:32 -05:00
Chris Green
670ef9bd7c nix package: improve dependencies based on prerequisites from manual. (#10927) 2019-03-26 13:39:40 -05:00
Michael Kuhn
63ddc44db6 ior package: Add patch to fix 3.2.0 with hdf5 (#10923) 2019-03-26 13:36:54 -05:00
fcannini
f08c9aa601 quantum-espresso: Enable EPW installation (#10637) 2019-03-26 13:33:10 -05:00
Chris Green
763549fe7c mysql: Support client-only, cxxstd and more versions (#10911) 
* add cxxstd variant
* add CMake constraints based on platform/version
* add older versions
* update boost dependency version constraints (which are closely
  tied to mysql version) and update boost cxxstd choice to be
  the same as the cxxstd chosen for mysql
* add client-only support (including a patch for 5.5.x)
* record the mysql package as a provider of the mysql-client virtual
 2019-03-26 13:19:06 -05:00
Chris Green
1bd8c0c460 boost: Fix build of versions < 1.62.0 (#10910) 
Improve management of the Fiber library and C++ standard support:

* Remove Fiber from list of libraries to build
* Improve variant management for Fiber; add variants for Context and
  Coroutine libraries.
* Add known conflict with C++17 for boost < 1.63.0
* Remove C++ standard "default" option, which left the choice of
  C++ standard to the compiler used to build boost
 2019-03-26 12:50:06 -05:00
Massimiliano Culpo
89b9880719 Add regression marker to pytest.ini (#11011) 2019-03-26 12:04:36 -05:00
Michael Kuhn
8434e7803d lz4: Add 1.8.3 (#11013) 2019-03-26 15:34:25 +01:00
Michael Kuhn
58d186fc00 zstd: Add 1.3.8 (#11012) 2019-03-26 15:33:26 +01:00
Nichols A. Romero
66172f80f3 Fixed some issues with CUDA-Intel compiler conflicts. (#10924) 
* Fixed some issues with CUDA-Intel compiler conflicts.

* Comment about expressing CUDA-compiler conflicts.

* More precise conflicts and also add support for Intel 19.0
 2019-03-26 15:31:56 +01:00
clellsolomon
31d7df7860 ninja-fortran package: add newer versions (#10921) 2019-03-25 20:38:45 -05:00
bfovet
cc2ff82027 New package: MMG (#10902) 2019-03-25 20:24:40 -05:00
Dustin Lagoy
14acfb65c4 netcdf-cxx package: Add optional netCDF4 support (#10899) 2019-03-25 20:22:15 -05:00
Omar Padron
57523c3f0b explicitly install unzip in all docker images (#10891) 2019-03-25 20:10:42 -05:00
Chris Green
17da285cfb range-v3 package: Add notes, conflicts and doc dependencies. (#10887) 
* record conflicts with compiler versions which don't provide
  required c++ standard support
* add doxygen (build) dependency
* add note that range-v3 is header-only as of 0.3.6 and update
  package description
 2019-03-25 20:10:01 -05:00
Chris Green
a4bf8de09b gl2ps: add missing dependencies and doc variant. (#10886) 
Makes building of documentation optional.
 2019-03-25 20:04:33 -05:00
Dustin Lagoy
4c68d2e14e py-netcdf4: avoid using system installs of dependencies (#10885) 
Use environment variables to point setup.py to Spack installations
of hdf5/netcdf
 2019-03-25 20:03:02 -05:00
Chris Green
c124b1f471 postgresql package: build enhancements. (#10877) 
We add new variants to handle readline vs libedit, a client-only
build and install, and bindings to TCL, Python and Perl. We also add
new versions and the ability to detect remote versions not otherwise
dealt with.
 2019-03-25 19:51:51 -05:00
simo-tuomisto
6478a32598 New package: elmer-fem (#10860) 
Elmer finite element method solver; builds Elmer, ElmerICE and
contributed solvers with MPI support.
 2019-03-25 19:47:15 -05:00
Omar Padron
bf03edb51b LLVM package: disable CUDA (#10858) 
This avoids using a system-installed CUDA package. In the future a
variant can be added to allow using Spack-installed CUDA, but for
now CUDA support is always disabled.
 2019-03-25 19:43:18 -05:00
Brian Van Essen
a88b540723 Conduit package: add option to build with hdf5 versions > 1.8 (#10913) 
Added a variant to allow conduit to build with newer versions of
HDF5.  Set the default for the variant to prefer compatibility mode
with HDF5 v1.8
 2019-03-25 12:26:30 -05:00
Satish Balay
365c17a3d5
xsdk: enable sundials@4.1.0 for xsdk@develop (#10989) 
- disable sundials varaiant for dealii and mfem - as they are incomatible with sundials@4.1.0
 2019-03-24 22:17:20 -05:00
Satish Balay
8c165494f2
hypre: add superlu-dist variant (#10985) 
- add a patch to fix build error with superlu-dist
 2019-03-24 22:16:47 -05:00
Satish Balay
d7e984bcf8
amrex: current @develop - and future releases require cmake@3.13 or higher (#10953) 2019-03-24 22:15:49 -05:00
Navdeep Rana
fb946e51a4 Added a package for chapel. (#11002) 
* Added a package for chapel.

* flake8 compliance.
 2019-03-24 17:18:19 -05:00
Xavier Delaruelle
95a0e9c693 environment-modules: add version 4.2.3 (#11003) 2019-03-24 17:17:50 -05:00
Denis Davydov
64acce557d petsc: workaround xcode stub-out-of-sync issue (#10999) 2019-03-24 10:38:40 -05:00
Daryl W. Grunau
7081dba9ee Packages/zoltan (#10432) 
* serialize the F90 interface build

* serialize the F90 interface build
 2019-03-23 13:38:29 +01:00
Stephen McDowell
878b122f45 add ninja v1.9.0 (#10994) 2019-03-22 10:05:14 -05:00
Eric Martin
ec45c22808 netgen: update broken URL (#10882) 
* netgen: update broken URL

* netgen: fix url_for_version URL
 2019-03-22 10:01:07 -05:00
Michael Kuhn
b6185d4ad7 openfoam-com: Fix flex dependency (#10956) 
openfoam-com needs flex's FlexLexer.h, which can only be found if flex
is also a link dependency.
 2019-03-22 12:46:53 +01:00
Eric Martin
ba5f37ee26 vdt: Add version 0.4.3 (#10982) 2019-03-22 11:57:30 +01:00
Michael Kuhn
ea227b9974 py-hpccm: New package (#10957) 2019-03-22 11:39:10 +01:00
Eric Martin
1599dce2ae canu: Add versions 1.8 and 1.7 (#10978) 2019-03-22 11:27:36 +01:00
Eric Martin
563e573b13 megahit: Add version 1.1.4 (#10979) 2019-03-22 11:19:28 +01:00
Eric Martin
d9eaad80c3 racon: Add versions 1.3.2 and 1.3.1 (#10980) 2019-03-22 11:19:13 +01:00
Eric Martin
487fa5713c trimgalore: Add versions 0.6.0 and 0.6.1 (#10981) 2019-03-22 11:18:45 +01:00
Eric Martin
46e0ad3269 bowtie: Add missing zlib dependency (#10984) 2019-03-22 11:17:16 +01:00
Matthias Diener
133d4ca9ce gdb: add version 8.2.1 (#10988) 2019-03-22 11:00:28 +01:00
Hadrien G
cc8a086082 ACTS: add version 0.8.2 (#10974) 2019-03-22 10:59:45 +01:00
Denis Davydov
6d971c4493 add ginkgo package, use it in dealii along with symengine (#10917) 2019-03-22 10:58:48 +01:00
Shahzeb Siddiqui
724acb6421 typo in documentation (#10976) 2019-03-21 14:29:40 -05:00
Stephen McDowell
7bc899d9ca add eigen v3.3.7 (#10955) 2019-03-21 12:16:26 -05:00
George Hartzell
aa1e70aab1 Minor commentary correction, TCL -> lmod (#10951) 2019-03-21 11:17:41 +01:00
Stephen McDowell
70e436e932 prevent UnboundLocalError when sourcing files (#10950) 
Patch extracted from #7536 courtesy of @mgsternberg
 2019-03-21 11:08:29 +01:00
Patrick Schratz
bffe3a605f update R to v3.5.3 (#10928) 
* update R to v3.5.3
 2019-03-20 13:06:57 -05:00
Michael Kuhn
e02eb3633e mpich: Do not use libfabric@1.7: with ch3 ofi netmod (#10919) 2019-03-20 10:01:39 -07:00
Michael Kuhn
c66a24f22d pkgconf: add 1.6.0 (#10942) 2019-03-20 14:10:11 +01:00
bfovet
81f699eca3 Update GMSH to 4.2.2 with OpenMP variant (#10914) 2019-03-20 05:12:57 +01:00