Glenn Johnson
1c0abaa6eb
r-dss: added new package at v2.36.0 with dependencies ( #17661 )
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This PR adds the r-dss package and the r-bsseq package, also new, as a
dependency. This includes the latest versions, which required updates to
the following dependencies:
- r-biocgenerics
- r-iranges
- r-s4vectors
- r-summarizedexperiment
Older versions of r-dss and r-bsseq are included as well to ensure
compatibility with older versions of the above dependencies.
2020-07-27 20:51:27 +02:00
Seth R. Johnson
6c2749536e
qt: fixed build with apple-clang ( #17706 )
2020-07-27 18:32:29 +02:00
Adam J. Stewart
4e4b8d8249
SciPy: added v1.5.2 ( #17708 )
2020-07-27 18:26:30 +02:00
ketsubouchi
032a52e006
scons: added support to Fujitsu compilers ( #17710 )
2020-07-27 18:23:53 +02:00
Hadrien G
e3cc7fc38c
acts: added v0.29 ( #17712 )
2020-07-27 18:13:56 +02:00
Amjad Kotobi
f2e66730d0
openmpi: added lustre variant to openmpi ( #17478 )
2020-07-27 18:11:57 +02:00
Claire Guilbaud
0ebdfb3c37
sphinxcontrib-mermaid: new package at v0.4.0 ( #17630 )
2020-07-27 17:30:22 +02:00
Claire Guilbaud
fdb21e3e91
json logger: new package at v0.1.11 ( #17628 )
2020-07-27 16:32:56 +02:00
Claire Guilbaud
d66d430ab5
pygments pytest: new package at v1.2.0 ( #17626 )
2020-07-27 15:44:26 +02:00
Claire Guilbaud
bbfc9fd448
commonmark: new package at v0.9.0 ( #17624 )
2020-07-27 15:02:56 +02:00
Claire Guilbaud
e960e016af
hieroglyph: new package at v1.0.0 ( #17625 )
2020-07-27 14:34:40 +02:00
Claire Guilbaud
074c0d622f
python docs theme: new package at v2020.1 ( #17627 )
2020-07-27 12:53:04 +02:00
Claire Guilbaud
458a9f22da
yolk3k: new package at v0.9 ( #17635 )
2020-07-27 12:48:58 +02:00
Claire Guilbaud
38730c6e68
sphinxcontrib trio: new package at v1.1.2 ( #17631 )
2020-07-27 12:14:12 +02:00
Claire Guilbaud
21a4edb1f3
sphinx gallery: new package at v0.7.0 ( #17633 )
2020-07-27 11:21:48 +02:00
Greg Becker
1ceec31422
add tutorial setup script to share/spack ( #17705 )
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* add tutorial setup script to share/spack
* Add check for Ubuntu 18, fix xvda check, fix apt-get errors
- now works on t2.micro, t2.small, and m instances
- apt-get needs retries around it to work
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-07-27 01:17:58 -07:00
Todd Gamblin
d351946194
bugfix: don't redundantly print ChildErrors ( #17709 )
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A bug was introduced in #13100 where ChildErrors would be redundantly
printed when raised during a build. We should eventually revisit error
handling in builds and figure out what the right separation of
responsibilities is for distributed builds, but for now just skip
printing.
- [x] SpackErrors were designed to be printed by the forked process, not
by the parent, so check if they've already been printed.
- [x] update tests
2020-07-26 22:41:55 -07:00
Hadrien G
907f9e8411
[root] Add version 6.22 ( #17459 )
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* Add ROOT v6.22
* Hello xext my old friend...
2020-07-26 10:08:53 -05:00
Patrick Gartung
66d59a90ed
Rename sas static-analysis-package ( #17695 )
2020-07-24 17:07:01 -07:00
Nicholas Sly
5795f1d7da
Add Totalview package ( #17643 )
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* Add initial totalview package.
* Add maintainer and helpful comments/information.
Co-authored-by: sly <sly@lanl.gov>
2020-07-24 16:01:32 -07:00
t-nojiri
de6dfe3707
brltty (package): Add dependency on alsa-lib ( #17616 )
2020-07-24 15:56:34 -07:00
Jen Herting
148acfefcc
py-gensim (package): add version 3.8.3; update dependency constraints ( #17641 )
2020-07-24 15:47:19 -07:00
Matthieu Dorier
b04f9e6774
MPICH (package): add optional support for argobots ( #17678 )
2020-07-24 15:42:00 -07:00
Christian Tacke
0e090064c4
singularity: Add version 3.6.1
2020-07-24 15:35:40 -07:00
vvolkl
be06803804
WHIZARD (package): add LCIO dependency, Openloops support ( #17658 )
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* WHIZARD: add versions 2.8.4 and 2.8.3
* New package: LCIO
* WHIZARD: add optional dependency on LCIO
* WHIZARD: add optional dependency on Openloops
* WHIZARD: allow building with either hepmc or hepmc3 dependencies
* Openloops: set process_lib_dir in configure
* Openloops: fix reference to variant
2020-07-24 15:25:57 -07:00
Dennis Klein
0c63c94103
Relax architecture compatibility check ( #15972 )
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* Relax architecture compatibility check
* Add test coverage for the spack.abi module
2020-07-24 10:00:55 -07:00
Andrew W Elble
99c46e8186
py-astropy: force re-cythonization of distributed .pyx files ( #17567 )
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astropy 3.2.1 fails to build with python 3.8.3 with
errors similar to this:
astropy/stats/_stats.c:318:11: error: too many arguments to function 'PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
These are files that are generated by cython, but are included in the
tarball. Since there's apparently been an API change to PyCode_New, they will
need to be re-cythonized to compile correctly.
2020-07-24 17:46:56 +02:00
Andrew W Elble
30d0347825
py-astropy-healpix: new package ( #17568 )
2020-07-24 17:39:45 +02:00
jdomke
ea50e4036e
scorep: add libunwind dependency ( #17580 )
2020-07-24 17:30:50 +02:00
Adam J. Stewart
f73a3d35a8
spack help --spec: add compiler flags ( #17584 )
2020-07-24 17:27:43 +02:00
Dmitriy
02f14fd857
Initialize new_specs in Environment.remove() ( #17592 )
2020-07-24 17:18:40 +02:00
Harmen Stoppels
54bce00d4d
Ensure that the stubs directory does not end up in the rpath ( #17619 )
2020-07-24 17:02:58 +02:00
Jon Rood
d3e4b14997
imagemagick: added dependency on libsm ( #17577 )
2020-07-24 17:00:25 +02:00
rempke
6bad79fca0
netlib-scalapack: fixed compilation with gcc 10 ( #17647 )
2020-07-24 16:53:32 +02:00
t-nojiri
13b3578d2f
camx: change compile option for aarch64 ( #17653 )
2020-07-24 16:39:40 +02:00
Adam J. Stewart
08b5b56566
Qhull: add v2019.1 and v2020.1 ( #17648 )
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* Qhull: add v2019.1 and v2020.1
* Fix compilation with Apple Clang
2020-07-24 16:16:53 +02:00
Adam J. Stewart
c1a2d66804
py-matplotlib: fix freetype and qhull dependencies ( #17649 )
2020-07-24 16:15:50 +02:00
Mark Olesen
c95c183bc4
openfoam: install META-INFO directory ( #17673 )
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Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-24 15:32:18 +02:00
Michael Kuhn
ed4b770e1a
gcc: added v10.2.0 ( #17681 )
2020-07-24 15:24:12 +02:00
Federico Ficarelli
b8c3e3e16f
hipsycl: switch to renamed default branch ( #17689 )
2020-07-24 15:19:59 +02:00
Rémi Lacroix
d9c1b62d38
CMake: added v3.18.0. ( #17688 )
2020-07-24 15:02:08 +02:00
ilbiondo
1aa1ddcd78
Updated elmer-fem recipe ( #17687 )
2020-07-24 09:47:09 +02:00
Adam J. Stewart
5fed42eae8
NumPy: add v1.19.1
2020-07-23 17:56:48 -07:00
ketsubouchi
1bbf8c0635
libgd (package): update configure to find jpeg dependency ( #17655 )
2020-07-23 17:55:34 -07:00
ketsubouchi
1fe07891e3
cctools (package): remove fstack-protector-all for Fujitsu compiler ( #17656 )
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The Fujitsu C compiler does not support the "fstack-protector-all" option.
2020-07-23 17:49:37 -07:00
Tamara Dahlgren
a88675ffa9
XBraid (package): Switch to Github URL ( #17670 )
2020-07-23 17:27:25 -07:00
Gregory Becker
63db5499ee
Merge tag 'v0.15.2' into develop
2020-07-23 16:55:22 -07:00
Gregory Becker
d6d839cd3e
update changelog for 0.15.2
2020-07-23 16:04:26 -07:00
Gregory Becker
3534717151
bump version number for 0.15.2
2020-07-23 16:04:08 -07:00
Chuck Atkins
547c71ad78
Revert "Add libglvnd packages/Add EGL support ( #14572 )" ( #17682 )
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This reverts commit 573489db71
2020-07-23 17:41:48 -04:00
