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Author SHA1 Message Date
George Hartzell
89ef576ba4 Add package for the Python regex library (#4771) 
Lightly tested on CentOS 7 with `python@2.7.13` and `python@3.6.0`.
 2017-07-15 18:11:54 +02:00
George Hartzell
ad2a22fa01 Add package for r-ada, update r-rpart version (#4772) 
* Add package for r-ada, update r-rpart version

Adds a package for r-ada.

Update the version for r-rpart because the previous version is
no longer at that URL.  The previous version *is* in the Archive,
but list_url does not seem to be able to find it.

* Clean up FIXMEs (blush)
 2017-07-15 18:08:36 +02:00
George Hartzell
8e6d7f117a Add package for MuSE (#4779) 2017-07-15 18:06:43 +02:00
George Hartzell
8bd22c3294 Add package for Somatic Sniper (#4778) 
Lightly tested on CentOS 7.
 2017-07-15 18:05:51 +02:00
homerdin
246c07f864 New Package: miniFE (#4712) 
* New Package: miniFE

* Removed extra property, using variant value directly
 2017-07-14 15:55:51 -05:00
Kshitij Mehta
31503cb058 Savanna (#4713) 
* savanna: Runtime framework for online workflow management from the ECP CODAR project

* savanna: added version 0.5

* savanna: Copying the package contents to prefix as part of installation

* savanna: Doing submodules=true for git checkout of develop version

* savanna: removed dependency on adios@develop. depends on adios

* Savanna: Converted package to MakefilePackage
 2017-07-14 15:54:57 -05:00
homerdin
f5f37845d6 New Package: Pathfinder (#4714) 
* New Package: Pathfinder

* Added index for String format

* Changed to make Makefile edit more specific

* Make Flake8 Happy

* Removed unneeded conversion
 2017-07-14 15:54:31 -05:00
George Hartzell
88cb8b493b Add package for freebayes (#4718) 
* Add package for freebayes

* Don't include url, must use git info.

* Fix flake8 complaints
 2017-07-14 15:49:46 -05:00
George Hartzell
ea8c05b263 Add package for Sniffles (#4719) 
* Add package for Sniffles

* Wire up a manual install step

The cmake infra doesn't install anything, so do it by hand.

The binaries land in a location that embeds the version...
 2017-07-14 15:49:02 -05:00
Audrey Thoma
1e205c09d8 hybpiper: new package (#4720) 
* hybpiper: new package and spades dependency

* hybpiper: making flkae8 happy

* hybpiper: fixing dependency errors

* fixing python dep type

* removing cmake from spade dependencies
 2017-07-14 15:48:30 -05:00
homerdin
c78ee4a733 Package/cloverleaf (#4759) 
* New Package: CloverLeaf

* Removed Tag and Added Documentation

* Corrected Dependencies and Variant Values
 2017-07-14 15:46:20 -05:00
pkondamudi
76d95b1798 New Package: Nekbone. (#4748) 2017-07-14 19:40:18 +02:00
pkondamudi
b3692d14fd New Package: EBMS (#4749) 2017-07-14 19:37:52 +02:00
Axel Huebl
0d8b126d66 libwebsockets: new versions (#4764) 
* libwebsockets: new versions

both new versions fix a nasty bug leading to a hanging
connection on connect.

* ISAAC Server: Fix libwebsockets

ISAAC server did hang in docker containers due to a bug
in libwebsockets.
 2017-07-14 10:28:15 -05:00
Denis Davydov
d929ea8102 slepc: fix download url (#4763) 2017-07-14 08:00:28 -05:00
pkondamudi
dfd56da358 New Package:XSBench (#4751) 
* New Package:XSBench

* minor changes

* replaced extend() with append()

* addressed comment.

* removed tags as per PR# 4749
 2017-07-13 22:21:30 -05:00
Patrick Gartung
f63cdc7b61 Add two python packages for editing mach-O headers. (#4725) 
* Add two python packages for editing mach-O headers. Much faster than calling otool and install_name_tool directly

* remove non-overriding function

* autopep8
 2017-07-13 22:07:22 -05:00
Audrey Thoma
3eedbd7c4e py-deeptools: new package and dependencies (#4717) 
* py-deeptools: new package and dependencies

* py-deeptools: fixing python things

* missed a fix
 2017-07-13 22:02:08 -05:00
Alen Kansakar
29fd896179 jags: Adding atlas as it depends on atlas 2017-07-13 09:48:30 -05:00
homerdin
34aea1328a New Package: CloverLeaf3D (#4705) 
* New Package: CloverLeaf3D

* Fixed Flake8 Mistake

* Removed unnecessary check
 2017-07-13 09:22:45 -05:00
Audrey Thoma
d68aa03868 graphmap: new package (#4707) 2017-07-13 09:21:37 -05:00
Jon Rood
47fe9e7aad Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF directly, for Trilinos. (#4687) 
* Adding OpenMP variant to Trilinos. Also building NetCDF with PNetCDF in Trilinos when necessary.

* Adding runtime error for PNetCDF variant in Trilinos when necessary. Omitting unnecessary openmp variant for Trilinos in Nalu.

* Changing variant checks to conflicts statements.

* Adding comments to Trilinos package.
 2017-07-13 09:14:15 -05:00
Audrey Thoma
bde58a319b idba: new package (#4722) 2017-07-13 08:35:22 -05:00
Audrey Thoma
c104fa233a infernal: new package (#4724) 2017-07-13 08:32:55 -05:00
Audrey Thoma
4cbe1b338f last: new package (#4729) 2017-07-13 08:26:17 -05:00
Audrey Thoma
e257ea59c2 maverick: new package (#4731) 2017-07-13 08:09:23 -05:00
George Hartzell
adcaa82b88 Add package for daligner (#4734) 2017-07-13 08:08:36 -05:00
Audrey Thoma
c7af89d8fc mcl: new package (#4732) 2017-07-13 08:03:26 -05:00
Denis Davydov
92e6616a8a dealii: workaround for concretization bug (#4735) 
* dealii: workaround for concretization bug

* trilinos: add Anasazi which got disabled recently
 2017-07-13 07:51:45 -05:00
Audrey Thoma
1ecb389dcb mitofates: new package and dependency libsvm (#4741) 2017-07-13 07:44:44 -05:00
Akhil Reddy Patlolla
5ac2020c98 Added ASPA Proxy App (#4743) 2017-07-13 07:30:01 -05:00
Alen Kansakar
6ce33d7773 Jags: Changing depends on to only include lapack 2017-07-12 14:52:54 -05:00
Alen Kansakar
d930c8d01a Jags: Fixing problems found by flack8 2017-07-12 11:39:08 -05:00
kansakar
8873fc3a20 Jags: Adding jags defination 2017-07-12 11:39:07 -05:00
Christoph Junghans
a95f40f18e hpx: added new package (#4709) 2017-07-12 07:54:27 +02:00
George Hartzell
ff906faf9a Typo: submdoules -> submodules (#4716) 2017-07-12 07:48:31 +02:00
Audrey Thoma
3566966d47 genometools: new package (#4706) 
* genometools: new package

* genometools: fixing perl dependency type
 2017-07-11 07:49:00 -05:00
Audrey Thoma
143d50ab67 fseq: new package (#4702) 
* fseq: new package

* fseq: fixed dependency type
 2017-07-10 18:30:24 -05:00
homerdin
5bad9dfeac New Package: MiniAMR (#4701) 
* New Package: MiniAMR

* Removed empty braces string formatting
 2017-07-10 18:30:08 -05:00
homerdin
45e731d574 New Package: HPCCG (#4693) 
* New Package: HPCCG

* Moved Run Script Install Location
 2017-07-10 12:31:41 -05:00
homerdin
c908ccecdc New Package: MiniAero (#4694) 2017-07-10 12:31:23 -05:00
Audrey Thoma
02258056fd exabayes: new pacakge (#4695) 
* exabayes: new pacakge

* exabayes: added configure arg

* exabayes: adding comments regarding compilers
 2017-07-10 12:29:59 -05:00
Audrey Thoma
1f9d6927b7 csdp: new pacakge (#4700) 2017-07-10 12:28:51 -05:00
Audrey Thoma
c80bca00ff ea-utils: new package (#4690) 
* ea-utils: new package

* ea-utils: simplifying self.spec.prefix

* ea-utils: added comment about perl

* ea-utils: fixing flake8 error
 2017-07-10 12:26:03 -05:00
EmreAtes
1abf31d3fa New package: CoMD (#4697) 
* New package: comd

* Avoid re-defining build
 2017-07-09 09:05:11 -05:00
Mike DePaulo
72aa99cb24 GCC: Add strip variant to reduce installation size (#4670) 
* gcc: Add strip variant

* gcc: Fix strip variant description being too long
 2017-07-07 22:17:52 -05:00
George Hartzell
efecefd4dd Add a package for tophat (#4698) 
Lightly tested on CentOS 7.
 2017-07-07 22:15:38 -05:00
Audrey Thoma
56b959501a fastx-toolkit: solving gcc conflict (#4696) 2017-07-07 16:53:15 -05:00
Christoph Junghans
1886b0b370 New package: quinoa (#4686) 2017-07-07 11:11:53 +02:00
homerdin
60a8b68a7e Added TeaLeaf Package (#4683) 2017-07-07 10:54:34 +02:00