Commit graph

27479 commits

Author SHA1 Message Date
Paulo Baraldi Mausbach
16692b802b
New python package support: py-river (#32718) 2022-09-20 15:47:08 -05:00
John W. Parent
fd66f55e3c
cmake: add v3.24.1 and v3.24.2 (#32654) 2022-09-20 11:24:16 -07:00
Wouter Deconinck
4b66364b06
gaudi: @:36 fails to build with fmt@9: (#32699)
Since fmt@9.0.0 and 9.1.0 were [added](6c4acfbf83) to spack a few days ago, gaudi fails to compile with default concretization. Since gaudi developers are usually paying attention to new versions of dependencies, I'm going to assume (perhaps optimistically) that the next bugfix version of gaudi will fix this (even though the issue has not been reported yet to Gaudi; I posted on the [key4hep public mirror](https://github.com/key4hep/Gaudi/issues/1)).
2022-09-20 11:20:55 -07:00
HELICS-bot
692f1d0e75
helics: Add version 3.3.0 (#32682)
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Ryan Mast <3969255+nightlark@users.noreply.github.com>
2022-09-20 11:53:59 -06:00
Stephanie Labasan Brink
2f796e1119
variorum: new versions 0.5 and 0.6, remove log option (#32731) 2022-09-20 11:46:04 -06:00
iarspider
ac459df2b6
Add fixed version 0.7.0 to cpu-features (#32726)
* Add fixed version 0.7.0 to cpu-features
* [@spackbot] updating style on behalf of iarspider

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-09-20 10:40:39 -07:00
Joel Falcou
d8e566d554
Update EVE to 2022.09 (#32729) 2022-09-20 10:35:39 -07:00
Luke Diorio-Toth
cc0e7c87c1
new version (py-multiqc v1.13) + new package (py-rich-click) (#32719)
* started updating multiqc package

* working now

* added py-rich-click

* fixed style

* changed py-matlibplot versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-networkx versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-coloredlogs versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed python versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-markdown versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-pyyaml requirement

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-requests requirements

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-spectra requirements

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-20 11:14:01 -06:00
Manuela Kuhn
757a2db741
py-python-gitlab: add 3.9.0 (#32723) 2022-09-20 10:41:53 -06:00
Manuela Kuhn
8409ec0f21
py-annexremote: add 1.6.0 (#32725) 2022-09-20 10:06:03 -06:00
Manuela Kuhn
0d3a4d799a
py-pybids: add 0.15.3 (#32722) 2022-09-20 11:03:33 -05:00
Manuela Kuhn
578d06a86a
py-nibabel: add 4.0.2 (#32721) 2022-09-20 11:01:06 -05:00
dependabot[bot]
e656b4659a
build(deps): bump codecov/codecov-action from 3.1.0 to 3.1.1 (#32717)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.0 to 3.1.1.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](81cd2dc814...d9f34f8cd5)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-09-20 14:03:47 +02:00
natshineman
3b273e263b
osu-micro-benchmarks: add v6.1 (#32692) 2022-09-20 12:57:59 +02:00
Jim Galarowicz
24245be85a
must: fix incorrect cmake argument (#32671) 2022-09-20 12:45:15 +02:00
Massimiliano Culpo
71434d8b9d intel-oneapi-itac: remove UTF-8 character in docstring
This character causes random failures in CI for Python 2.7
2022-09-20 11:02:10 +02:00
iarspider
2518a55105
Add checksum for py-nbconvert 6.5.1 (#32646) 2022-09-20 09:31:48 +02:00
Jen Herting
637a95c67f
py-h5py: add v3.7.0 (#32578) 2022-09-20 09:30:36 +02:00
Manuela Kuhn
7e00852278
py-bids-validator: add 1.9.8 (#32712) 2022-09-20 01:05:45 -06:00
Gregory Lee
9b9691233a
stat: add v4.2.1 (#32691) 2022-09-20 08:43:36 +02:00
Sreenivasa Murthy Kolam
0405ed6e9b
Bump up the version for rocm-5.2.1 release (#32195)
* Bump up the version for rocm-5.2.1-initial commit
* Bump up the version for rocm-5.2.1 release
* Bump up the version for rocm-5.2.1 release
* correct the PROF_API_HEADER_PATH to include
* Bump up the version of rocm-openmp-extras for rocm-5.2.1 release
* bump up the version of rocwmma for 5.2.1
2022-09-19 21:13:38 -06:00
Jim Edwards
60997a7bc3
add pio2_5_9 to spack package (#32716) 2022-09-19 15:45:40 -06:00
Adam J. Stewart
5479f26aa6
py-pandas: add v1.5.0 (#32714) 2022-09-19 15:09:52 -06:00
kent-cheung-arm
8a7343f97b
Added variant to ensure Arm Forge license acceptance (#32635)
* Added variant to ensure Arm Forge license acceptance
* Update var/spack/repos/builtin/packages/arm-forge/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-19 13:45:43 -07:00
Wouter Deconinck
5b26df8f64
imagemagick: new variant ghostscript (#32450)
* imagemagick: new variant ghostscript

Ghostscript adds about 75 dependencies to an installation of
imagemagick (97 without, 172 with Ghostscript). This adds a
variant (defaulting to true for backward compatibility) that
allows users to turn off Ghostscript support.

* imagemagick: be explicit when `--with-gslib`

* imagemagick: fix suggestion fail

* imagemagick: use spec.prefix.share.font

* imagemagick: default ghostscript false

* imagemagick: no need for join_path anymore

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-19 15:41:11 -05:00
Adam J. Stewart
83e66ce03e
Deprecate Python 2 support (#32615)
This PR deprecates using Spack to install [EOL Python versions](https://endoflife.date/python), including Python 2.7, 3.1–3.6. It also deprecates running Spack with Python 2.7. Going forward, we expect Spack to have the following Python support timeline.

### Running Spack

* Spack 0.18 (spring 2022): Python 2.7, 3.5–3.10
* Spack 0.19 (fall 2022): Python 2.7 (deprecated), 3.6–3.11
* Spack 0.20 (spring 2023): Python 3.6–3.11

### Building with Spack

* Spack 0.18 (spring 2022): Python 2.7, 3.1–3.10
* Spack 0.19 (fall 2022): Python 2.7, 3.1–3.6 (deprecated), 3.7–3.11
* Spack 0.20 (spring 2023): Python 3.7–3.11

This is a reboot of #28003. See #31824 for a detailed discussion of the motivation for this PR.
If you have concerns about this change, please comment on #31824.
2022-09-19 13:34:38 -07:00
Manuela Kuhn
cc78d5db36
py-datalad: add 0.17.5 (#32676)
* py-datalad: add 0.17.5

* Fix description of py-types-urllib3

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add colorama dependency for windows

* Fix importlib-metadata dependency

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Use conflict to avoid dependency duplication

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-19 15:30:34 -05:00
rsanthanam-amd
8f8205af88
NCCL should not be dependent on ROCm builds since RCCL is used instead. (#32461)
Allow the nccl flag to be specified even for ROCm builds so that NCCL kernels are included in the build.

In this case the NCCL kernels will use RCCL as the backend implementation.
2022-09-19 15:02:02 -05:00
Stephen Sachs
13d870157f
Adding intel-oneapi-itac package (#32658)
* Adding intel-oneapi-itac package
* Make black happy
* add rscohn2 as maintainer
* black prefers double quotes

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2022-09-19 12:44:32 -07:00
Terry Cojean
5d42185698
Ginkgo: improve smoke testing (#32647)
* Ginkgo: improve smoke testing
* Fix style issues
* Pass `self.compiler.{cc,cxx}` to the smoke tests
2022-09-19 12:37:34 -07:00
Ashwin Kumar
3ffc7f4281
patch etsf-io tests (#32666)
(Patches from meisam.tabriz@mpcdf.mpg.de and smoke tests from @fangohr)
2022-09-19 12:31:59 -07:00
Wouter Deconinck
7d250c4bea
root: determine_variants cxxstd=20 support (#32673)
This is somewhat ahead of reality, but once/when external ROOT installs with cxxstd=20 are common, we will need this to pick up the correct variant.
2022-09-19 11:32:47 -07:00
snehring
edee67d96f
fasttree: updating to 2.1.11 (#32683) 2022-09-19 11:07:51 -07:00
Massimiliano Culpo
fc1e25c5e1
Don't run bootstrap on package only PRs (#32689)
* Don't run bootstrap on package only PRs

* Run bootstrap tests when ci.yaml is modified

* Test a package only PR

* Revert "Test a package only PR"

This reverts commit af96b1af60b0c31efcc9a2875ffb1a809ef97241.
2022-09-19 10:59:29 -07:00
Adam J. Stewart
bb071d03ba
py-sip: add v6.6.2 (#32695)
* py-sip: add v6.6.2

* Fix python deptype
2022-09-19 10:56:47 -07:00
Wouter Deconinck
0298823e28
edm4hep: allow variant cxxstd 20, sync with podio (#32698)
Now that `podio` can support `cxxstd` variants 17 and 20, we can allow `edm4hep` to use `cxxstd=20` as well, but must ensure that `edm4hep` uses the same `cxxstd` variant as `podio`. Solution as in `celeritas`.
2022-09-19 10:51:22 -07:00
Laurent Aphecetche
51d2c05022
geant4-vmc: add version 6-1-p1 (#32704) 2022-09-19 10:12:02 -07:00
iarspider
3762e7319d
Fix benchmark recipe after branch name was changed (#32708) 2022-09-19 10:08:30 -07:00
Wouter Deconinck
2f19826470
geant4: new bugfix version 11.0.3 (#32700)
Geant4 has a new bugfix version 11.0 patch-03, [release notes](https://geant4-data.web.cern.ch/ReleaseNotes/Patch.11.0-3.txt). No build system changes.
2022-09-19 13:11:31 +01:00
Manuela Kuhn
0f9cd73f58
py-neurora: add 1.1.6.8 (#32684) 2022-09-19 04:41:41 -06:00
Manuela Kuhn
17c16ac2fc
py-pydicom: add 2.3.0 (#32681) 2022-09-19 04:25:35 -06:00
John W. Parent
0376a62458
Attempt at patching phist find mpi heuristic (#32688)
for updated phist version
2022-09-18 11:18:28 -05:00
Manuela Kuhn
d4c13b0f8f
Add skip_import to PythonPackage and use it in py-nilearn (#32664)
* Add skip_import to PythonPackage and use it in py-nilearn

* Fix dependencies
2022-09-17 23:02:30 +00:00
Paul Kuberry
2c7c749986
xyce: Change preferred to last numeric version (#32679)
- Also handles new constraints on Trilinos version
2022-09-17 13:57:40 -06:00
Robert Cohn
9e0755ca3a
[intel-oneapi-compilers] fix CC/CXX (#32677) 2022-09-16 14:16:06 -04:00
Massimiliano Culpo
0f26931628
CI: add coverage on Windows (#32610)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2022-09-16 05:38:29 -07:00
Todd Gamblin
a0c7209dc1
bugfix: package hash should affect process, dag, and dunder hashes (#32516)
This fixes a bug where two installations that differ only by package hash will not show
up in `spack find`.

The bug arose because `_cmp_node` on `Spec` didn't include the package hash in its
yielded fields. So, any two `Spec` objects that were only different by package hash
would appear to be equal and would overwrite each other when inserted into the same
`dict`. Note that we could still *install* specs with different package hashes, and they
would appear in the database, but we code that needed to put them into data structures
that use `__hash__` would have issues.

This PR makes `Spec.__hash__` and `Spec.__eq__` include the `process_hash()`, and it
makes `Spec._cmp_node` include the package hash. All of these *should* include all
information in a spec so that we don't end up in a situation where we are blind to
particular field differences.

Eventually, we should unify the `_cmp_*` methods with `to_node_dict` so there aren't two
sources of truth, but this needs some thought, since the `_cmp_*` methods exist for
speed. We should benchmark whether it's really worth having two types of hashing now
that we use `json` instead of `yaml` for spec hashing.

- [x] Add `package_hash` to `Spec._cmp_node`
- [x] Add `package_hash` to `spack.solve.asp.spec_clauses` so that the `package_hash`
      will show up in `spack diff`.
- [x] Add `package_hash` to the `process_hash` (which doesn't affect abstract specs
      but will make concrete specs correct)
- [x] Make `_cmp_iter` report the dag_hash so that no two specs with different
      process hashes will be considered equal.
2022-09-16 00:57:10 +00:00
liuyangzhuan
46d7ba9f78
adding butterflypack 2.2.0 (#32670) 2022-09-15 18:14:01 -06:00
iarspider
31c24cd0d5
New package: xrdcl-record (#32663)
* New package: xrdcl-record
* Flake-8
2022-09-15 10:13:37 -07:00
Matthew Archer
66b451a70d
Fenicsx v0.5.0 (#32611)
* initial commit of 0.5.0 changes
* updated dependencies
* updated ffcx sha
* comment style
* llvm compilers
* introduce pugixml dependency for 0.5.0:
* update compilers to support C++20 features
* style fixes
* xtensor and xtl not needed for basix 0.5.0 and above
* Skip to Basix 0.5.1

The 0.5.1 release removes the C++ build dependency on Python that sneaked into the 0.5.0 build system.

* Improve depends on version ranges
* More dependency version improvements

Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk>
Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
2022-09-15 08:11:25 -07:00