Michael Kuhn
5bbbfe9446
Introduce virtual dependency pkgconfig ( #5198 )
...
There are two providers, pkgconf and pkg-config, with the former being
the default provider.
2017-11-23 08:05:38 -07:00
Sergey Kosukhin
7f0659f032
New version and patch for 'sqlite'. ( #6303 )
2017-11-23 08:04:41 -07:00
Audrey Thoma
cd7d812be9
express: new package ( #6281 )
2017-11-23 08:04:02 -07:00
Ondřej Čertík
7a2b3b2588
Add a patch for Intel 18.0.1 ( #6392 )
2017-11-23 07:28:35 -07:00
Michael F. Herbst
a955f63530
Add bohrium to spack ( #6395 )
...
* Add bohrium package.py
* Changes suggested by @davydden
* Add +cuda guard
* Specify required environment setup
2017-11-23 07:24:55 -07:00
Eric
1dba6435bd
r-plotly: Create new package ( #6423 )
2017-11-23 07:17:17 -07:00
Denis Davydov
ddf10fa322
dealii: limit CMake to 3.9 as 3.10.0 is not supported yet ( #6427 )
2017-11-23 07:16:44 -07:00
sknigh
e2cf933ec1
gcc environment module will set CC, CXX, FC, F77, and F90 flags ( #3954 )
2017-11-23 12:44:55 +01:00
Cameron Smith
951679376e
zoltan: add optional dependency on parmetis ( #6387 )
2017-11-23 09:03:02 +01:00
Eric
6fd1009081
r-mixtools: Create new package ( #6421 )
2017-11-23 09:01:10 +01:00
Eric
bdd8bb1fd9
r-ranger: Create new package ( #6422 )
2017-11-23 09:00:32 +01:00
Chien-Chang Feng
630d7e19db
py-yt: Yt-project is moved. Add new version. ( #6409 )
2017-11-23 07:25:35 +01:00
Jon Rood
8b63cc6ad6
Using MPI environment compiler variables for pnetcdf. ( #6424 )
2017-11-22 21:34:21 -08:00
Massimiliano Culpo
0fc6611dc2
Changed every docs variant into doc as decided in #2663 ( #6412 )
...
fixes #2663
2017-11-22 15:06:59 +01:00
Sergey Kosukhin
d4ab511f73
Script for 'eccodes' is compatible with Python 3. ( #6402 )
2017-11-21 15:59:04 -07:00
Audrey Thoma
a0df5ae3e0
phantompeakqualtools: new package ( #6403 )
2017-11-21 15:58:20 -07:00
Eric
9e013ee036
r-pbapply: Create new package ( #6377 )
2017-11-21 13:45:12 -07:00
Eric
5a72d30816
r-ggjoy: Create new package ( #6399 )
2017-11-21 13:44:25 -07:00
Eric
60b50a7bd2
r-ica: Create new package ( #6400 )
2017-11-21 13:43:02 -07:00
Eric
d6a5310df5
r-cppprogress: Create new package ( #6398 )
2017-11-21 13:42:44 -07:00
Eric
d725904803
r-sdmtools: Create new package ( #6397 )
2017-11-21 13:42:28 -07:00
BenBrands
27b9d2614c
CMake: add 3.10.0 ( #6393 )
2017-11-21 08:04:53 -07:00
David Poliakoff
003f83db50
gotcha: new package ( #6391 )
...
* Initial stab at a package for Gotcha
* Commit with no boilerplate
* Flake8
2017-11-21 08:04:43 -07:00
Audrey Thoma
c4613b8e1f
mira: new package ( #6385 )
2017-11-21 08:04:08 -07:00
Michael F. Herbst
f0c0243cd4
Fix to allow installing pocl 0.14 again ( #6372 )
...
* Resolve issue 4669
* Use prefix path magic attribute
2017-11-21 08:03:36 -07:00
Yifan Zhu
5250c8eb0a
r-broom: new package ( #6282 )
2017-11-21 10:49:09 +01:00
Yifan Zhu
e3abc7bfa4
r-haven: created new package ( #6293 )
2017-11-21 09:54:43 +01:00
Yifan Zhu
b7189ecf9e
r-psych: created new package ( #6286 )
2017-11-21 09:40:10 +01:00
Yifan Zhu
ef8429c99c
r-modelr: created new package ( #6289 )
2017-11-21 09:26:44 +01:00
Eric
0743c5bde6
r-crosstalk: Create new package ( #6383 )
2017-11-20 21:52:58 -07:00
Eric
cd5e6a14bb
r-fnn: Create new package ( #6384 )
2017-11-20 21:52:39 -07:00
Audrey Thoma
8b2abfb28b
masurca: new package ( #6386 )
2017-11-20 21:51:35 -07:00
Eric
70ce7e2099
meme: add version 4.12.0 ( #6388 )
2017-11-20 21:50:46 -07:00
Eric
035cce2b81
py-biopython: add version 1.70 ( #6389 )
2017-11-20 21:50:25 -07:00
Eric
17e0b81463
r-ggridges: Create new package ( #6376 )
2017-11-20 14:18:16 -07:00
Eric
30b794254f
py-pysam: add version 0.13 ( #6382 )
2017-11-20 14:08:25 -07:00
BenBrands
93d5a91a56
dealii: fix HDF5 dependency ( #6374 )
2017-11-20 11:57:53 -07:00
BenBrands
83db25967e
Atlas: add 3.11.39 ( #6375 )
2017-11-20 11:57:34 -07:00
Eric
9040f34aba
r-tclust: Create new package ( #6380 )
2017-11-20 11:57:04 -07:00
Eric
1d69dbe7ae
r-diffusionmap: Create new package ( #6378 )
2017-11-20 11:56:47 -07:00
Eric
012acdc7a2
r-chemometrics: Create new package ( #6379 )
2017-11-20 11:56:33 -07:00
Denis Davydov
4e878c21cd
elpa: add 2017.05.002 and 2017.05.003 ( #5306 )
...
* elpa: add 2017.05.002 and 2017.05.03
* add a variant for optimization flags
2017-11-20 11:17:22 -07:00
Denis Davydov
34da07db9b
dealii: add cuda_arch variant via CudaPackage ( #6070 )
2017-11-19 12:39:13 -07:00
Adam J. Stewart
acbdf516f7
Add a new package for rlwrap ( #6371 )
2017-11-19 06:45:25 -07:00
lingnanyuan
cf3df2a321
r-dose: Create new package. ( #6355 )
2017-11-18 12:54:14 -07:00
Eric
20092adb94
r-vgam: Create new package ( #6363 )
2017-11-18 06:39:55 -07:00
Eric
618f4dff6d
r-bindrcpp: Create new package ( #6366 )
2017-11-18 06:36:39 -07:00
Eric
1c55a401b1
r-dtw: Create new package ( #6365 )
2017-11-18 06:35:47 -07:00
Eric
ebfc7bd7aa
r-som: Create new package ( #6364 )
2017-11-18 06:35:21 -07:00
Michael Kuron
e2fea1e1e6
siesta: new package ( #6346 )
...
* siesta: new package
* siesta: use libs instead of ld_flags everywhere
2017-11-17 19:01:15 -07:00
Stephen Hudson
b2f0306c6f
Mpi4py update ( #6342 )
2017-11-17 19:00:36 -07:00
Javier Cervantes
21da747a5d
hepmc: fix hash and urls, add new version 3.0.0 ( #6348 )
2017-11-17 18:59:52 -07:00
健美猫
8bc024d2d9
Add cluster.2017.5 and cluster.2018.1. ( #6349 )
2017-11-17 18:59:18 -07:00
lingnanyuan
9647038f27
r-rvcheck: Create new package. ( #6351 )
2017-11-17 18:59:00 -07:00
lingnanyuan
eda91bebd7
r-gosemsim: Create new package. ( #6352 )
2017-11-17 18:58:43 -07:00
lingnanyuan
d836d7e7ea
r-do-db: Create new package. ( #6353 )
2017-11-17 18:58:23 -07:00
lingnanyuan
c604638681
r-fgsea: Create new package. ( #6354 )
2017-11-17 18:58:01 -07:00
lingnanyuan
5c06255b24
r-clusterprofiler: Create new package. ( #6356 )
2017-11-17 18:57:40 -07:00
sknigh
1f8f593dd6
Added libhio 1.4.0.0 ( #6357 )
2017-11-17 18:57:17 -07:00
Brian Homerding
17debcb9b2
NuT: Add Installation of lib and demo app ( #6341 )
2017-11-16 16:30:42 -07:00
Matthias Vogelgesang
a62f8698c3
Add UFO and dependencies ( #6337 )
...
* Add json-glib
* Add ufo-core
* Add ufo-filters
2017-11-16 09:37:17 -08:00
healther
ef3c909701
add package py-numba ( #6323 )
...
* add package py-numba
* Update package.py
* Update package.py
* Update package.py
2017-11-16 10:13:20 -07:00
Audrey Thoma
e941f33eaf
meraculous: new package ( #6292 )
...
* meraculous: new package
* adding gcc version conflict
* Update package.py
* Update package.py
2017-11-16 09:40:46 -07:00
lingnanyuan
bb3d5fd313
r-rhdf5: Create new package. ( #6330 )
2017-11-16 09:40:15 -07:00
lingnanyuan
e732a554ff
r-shortread: Create new package. ( #6332 )
2017-11-16 09:30:18 -07:00
lingnanyuan
cca06422fa
r-sva: Create new package. ( #6333 )
2017-11-16 09:28:59 -07:00
David Hows
d89b09493c
Minor package fixes ( #6334 )
...
* Add no-implicit-fallthrough to MsgpackC
* Add 0.2.1 of Neovim
* Lint
2017-11-16 09:28:40 -07:00
Stephen Hudson
9d1224e5d8
py-petsc4py: Update version to 3.8.0 and add dependencies ( #5792 )
...
* py-petsc4py: Update version to 3.8.0 and add dependencies
- Added explicit dependency on python and numpy
* Kept old version - and corrected minimal python version
* Update to 3.8.1
2017-11-15 16:49:36 -07:00
baip
697f3ea71d
cp2k: add dependency on smm and libxc & new version 5.1 ( #6194 )
...
* cp2k: add libxsmm dependency
* cp2k: add libxc dependency
* cp2k: add smm variant to select from libxsmm or libsmm
* cp2k: add version 5.1
2017-11-15 16:49:08 -07:00
Christoph Junghans
7da8a02cbf
git grep --files-with-matches github.com/llnl/spack | xargs sed -i '/github.com/s@llnl/spack@spack/spack@' ( #6329 )
2017-11-15 16:46:39 -07:00
Denis Davydov
cb5fd6035a
intel: add 2018.1 ( #6322 )
2017-11-15 13:13:15 -07:00
Axel Huebl
d1a733bc86
xtensor, xtl, xsimd ( #6315 )
...
Adds the QuantStack libs (C++, header-only) needed for
xtensor.
2017-11-15 13:12:31 -07:00
Yifan Zhu
cde0570c56
r-janitor: created new package ( #6313 )
2017-11-15 13:09:24 -07:00
Yifan Zhu
0d9ab84ebb
r-dbplyr: created new package ( #6311 )
2017-11-15 13:09:11 -07:00
Howard Pritchard
af1b93b3db
Open MPI: add 2.0.4 release to package file ( #6310 )
...
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-11-15 13:03:07 -07:00
健美猫
71f12597a7
Update pgi to 17.10 . ( #6306 )
2017-11-15 13:02:54 -07:00
Sergey Kosukhin
e77b11674f
Update for 'magics' and 'libemos'. ( #6275 )
2017-11-15 13:01:23 -07:00
Benedikt Riedel
2eb7fabe62
Allow openblas to build on a VM ( #6258 )
...
This adds a "virtual_machine" boolean variant which adds build
options that enable building openblas on a VM.
2017-11-15 10:32:02 -08:00
Eric
9acf207023
picard: add versions and fix url format ( #6309 )
2017-11-14 16:41:27 -07:00
Michael Kuhn
ec5d366bcd
likwid: Fix hash for 4.3.0 ( #6307 )
...
Prefer 4.2.1 for now because 4.3.0's hash changes regularly.
2017-11-14 16:41:05 -07:00
健美猫
d9a4e7a038
Update miniconda to 4.3.30. ( #6233 )
2017-11-14 12:11:53 -08:00
Adam J. Stewart
138e9d08c6
Add the latest version of Lmod ( #6297 )
2017-11-14 10:32:41 -08:00
koebbe
50957bd44f
py-h5py: make sure to depend on the hl variant of hdf5 ( #6304 )
2017-11-14 09:26:58 -07:00
vishalkenchan
0692029273
update trilinos checksums ( #6301 )
2017-11-14 09:22:34 -07:00
Michael Kuhn
aa27432a1d
ncl: Check for ncl binary after installation ( #6298 )
...
ncl's build system will happily continue in case of errors, which might
result in the ncl binary not being built.
2017-11-14 09:22:04 -07:00
Michael Kuhn
e31b997162
icu4c: Update to 60.1 ( #6295 )
...
Previous versions try to include xlocale.h, which fails on glibc >= 2.26.
2017-11-14 09:21:35 -07:00
Yifan Zhu
a8f9182ef3
r-forcats: created new package ( #6291 )
2017-11-14 09:21:21 -07:00
Michael Kuhn
93bca2f3a2
libbson, libmongoc: Update to 1.8.1 ( #6290 )
2017-11-14 09:21:05 -07:00
Eric
137a9e64ac
trimgalore: add version 0.4.5 ( #6288 )
2017-11-14 09:20:20 -07:00
Yifan Zhu
392e25b7e6
r-mnormt: created new package ( #6287 )
2017-11-14 09:20:06 -07:00
Yifan Zhu
05eb287ed9
r-bindr: created new package ( #6285 )
2017-11-14 09:19:49 -07:00
Yifan Zhu
c042644b53
r-glue: created new package ( #6283 )
2017-11-13 16:25:52 -07:00
Douglas Duckworth
c7d2b4dbd6
relion 2.1 - update variant defaults ( #6201 )
...
Default precision should be double for CPU. Generally users also want
to use GPUs so the +cuda variant is now also enabled by default.
2017-11-13 12:29:43 -08:00
Christoph Junghans
bde727e187
mpibash: move to autotools ( #6253 )
2017-11-13 10:48:31 -07:00
Christoph Junghans
02335fa849
ucx: initial commit ( #6265 )
2017-11-13 10:47:58 -07:00
Eric
306aca812d
ont-albacore: add version 2.1.2 ( #6278 )
2017-11-13 10:47:40 -07:00
Satish Balay
6fd92e4257
petsc: update to version 3.8.2 ( #6244 )
...
Includes pkgconfig fix [for mfem static build failure]
2017-11-11 07:16:03 -07:00
Brian Homerding
19f8940c01
Nekbone: Installing data files for example runs ( #6243 )
...
* Nekbone: Installing data files for example runs
* Typo Fix
2017-11-10 19:59:33 -07:00
Sergey Kosukhin
263126bc5d
Create symlink for 'swig' binary after installation. ( #6240 )
2017-11-10 19:50:11 -07:00
Aaron Fisher
af06ea0e74
Fixed mfem mpi build issue. ( #6254 )
...
* Fixed mfem mpi build issue.
* Fixed a non-mpi build issue and switched to the latest official MFEM release.
2017-11-10 19:49:17 -07:00
Yifan Zhu
e38f31e773
feature/r-reprex: new package ( #6257 )
2017-11-10 19:47:21 -07:00
Cyrus Harrison
b079e1dbd5
add alpine ascent ( #6224 )
...
* add ascent package and and deps
* proper use of site_packages_dir prop
* flake8
* add maitain, small updates
* flake8
* flake8
* fixs for docstrings for sphinx
2017-11-10 17:00:47 -08:00
becker33
917d021997
Add version 1.04 ( #6259 )
2017-11-10 15:52:48 -08:00
becker33
a7b817b494
elfutils: add --no-as-needed flag for library ordering issue ( #6256 )
...
* add --no-as-needed flag for library ordering issue libelf
* fix syntax error.
2017-11-10 11:42:37 -08:00
Yifan Zhu
f6ed8d856a
xclip: created new package ( #6248 )
2017-11-10 11:13:00 -07:00
Yifan Zhu
a872dc5927
r-clipr: created new package ( #6249 )
2017-11-10 11:11:45 -07:00
lingnanyuan
acc3817ffc
r-purrr: Create new package. ( #6241 )
2017-11-09 14:51:30 -07:00
lingnanyuan
65a278c927
r-covr: Create new package. ( #6239 )
2017-11-09 13:19:53 -07:00
lingnanyuan
e43e29209d
r-readxl: Create new package. ( #6238 )
2017-11-09 13:19:43 -07:00
lingnanyuan
0902f58f3d
r-cellranger: Create new package. ( #6237 )
2017-11-09 13:19:25 -07:00
lingnanyuan
5e0e3092f6
r-rematch: Create new package. ( #6236 )
2017-11-09 13:19:12 -07:00
Satish Balay
2b07379831
petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configur… ( #6189 )
...
* petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configured with zlib
* petsc: fix dependency [of zlib to be on hdf5 - and not on petsc]
* petsc: use the fact that hdf5/package.py has a hard dependency on zlib [so no need to check for this dependency in code]
recommended-by: @davydden
* petsc: change hdf5 dependency to 'hdf5+hl' as petsc configure is looing for -lhdf5_hl
https://github.com/spack/spack/issues/5846
2017-11-09 11:34:59 -08:00
Satish Balay
8d512ce9ae
magma: cuda updates [from xsdk-0.3.0 branch] ( #6160 )
...
- add gcc dependency per cuda versions
- Fix for cuda-9.0 as it does not support sm20
nvcc fatal : Unsupported gpu architecture 'compute_20'
2017-11-09 11:34:40 -08:00
lingnanyuan
ee867db5de
r-log4r: Create new package. ( #6133 )
2017-11-09 10:23:48 -07:00
Simone Bnà
c79a0fbbf2
mesa: fixed url for version ( #5818 )
2017-11-09 10:16:52 -07:00
Benedikt Riedel
266de67c24
ROOT needs to have a consistent version of binutils, as it is very sensitive to the version of libopcodes. You can't move the code from one system (with the same OS) as another. ( #6226 )
2017-11-09 06:49:27 -08:00
lingnanyuan
935a6b00d7
r-analysispageserver: Create new package. ( #6135 )
2017-11-09 07:23:10 -07:00
Levi Baber
74d38b3150
py-dlcpar ( #6229 )
...
* py-dlcpar: new package
* py-dlcpar: whitespace
2017-11-09 07:21:56 -07:00
baip
acf6653933
pexsi: add version 0.10.2 ( #6232 )
2017-11-09 07:21:39 -07:00
David Gardner
d9fc26b2a5
add sundials 3.1.0 ( #6230 )
2017-11-09 14:04:03 +01:00
Luigi Calori
24bb3c61de
fix perl dependent modules, #5900 ( #5937 )
...
* FIX perl dependent environmwent setup to avoid void lines in generated modules as #5900
* remove debug prints
* fix flake8
2017-11-08 22:10:50 -07:00
Alfredo Adolfo Gimenez
a754bd7eee
Package/sosflow ( #6122 )
...
* Added missing deps to libffs
* SOSflow spack package pointing to sos_flow feature/spack branch
* Using tag for spack build
* Change url to spack/spack
2017-11-08 22:07:37 -07:00
David Gardner
a656bc300a
add patch for building sundials ( #6161 )
...
* add patch for building sundials on mac
* add upper limit on the patch
2017-11-08 22:06:34 -07:00
Yifan Zhu
3159841e33
r-callr: created new package ( #6223 )
2017-11-08 21:59:21 -07:00
lingnanyuan
72bec9a7a0
r-rex: Create new package. ( #6221 )
2017-11-08 21:57:09 -07:00
Yifan Zhu
ca2ffd9299
r-rvest: created new package ( #6220 )
2017-11-08 21:56:50 -07:00
Levi Baber
ef126523f1
fastme: new package ( #6219 )
2017-11-08 21:56:32 -07:00
Yifan Zhu
edc1e6a0d8
r-selectr: created new package ( #6218 )
2017-11-08 21:56:02 -07:00
lingnanyuan
e57564e899
r-tseries: Create new package. ( #6216 )
2017-11-08 21:55:45 -07:00
sknigh
699748a2be
Added missing build dependency to json-c ( #6211 )
2017-11-08 21:55:28 -07:00
lingnanyuan
e2004076b1
r-allelicimbalance: Create new package. ( #6044 )
2017-11-08 21:52:46 -07:00
Yifan Zhu
ac7f5a1af1
r-mzr: created new package ( #6206 )
2017-11-08 19:53:00 -07:00
Yifan Zhu
cd4b19ffa8
r-msnbase: new package ( #6207 )
2017-11-08 19:52:38 -07:00
lingnanyuan
912d39908d
r-sqldf: Create new package. ( #6208 )
2017-11-08 19:52:08 -07:00
lingnanyuan
4585d6426a
r-gsubfn: Create new package. ( #6209 )
2017-11-08 19:51:51 -07:00
Yifan Zhu
b110cd0b12
r-vsn: new package ( #6210 )
...
* r-hexbin: updated md5
* r-vsn: created new package
2017-11-08 19:51:35 -07:00
lingnanyuan
7848e0d4b6
r-quantmod: Update version to 0.4-11 ( #6212 )
2017-11-08 19:51:13 -07:00
Yifan Zhu
ecdaea1c8e
r-xml2: created new package ( #6217 )
2017-11-08 19:50:53 -07:00
lingnanyuan
1c2292dcd4
r-timedate: Create new package. ( #6215 )
2017-11-08 19:50:37 -07:00
lingnanyuan
5558cce438
r-fracdiff: Create new package. ( #6214 )
2017-11-08 19:50:18 -07:00
lingnanyuan
2cd57876c7
r-forecast: Create new package. ( #6213 )
2017-11-08 19:49:58 -07:00
Christoph Junghans
b3f678c1c0
gasnet: add 1.30.0 ( #6167 )
...
* gasnet: add 1.30.0
* gasnet: expose more options as variants
* gasnet: change defaults
2017-11-08 19:43:13 -07:00
Audrey Thoma
877bee3cb5
guidance: new package ( #6079 )
...
* guidance: new package
* not really fixed yet
* adding loop
* fixing url
* dang typos
2017-11-08 14:07:13 -07:00
lingnanyuan
dd3a6d7f18
r-ampliqueso: Create new package. ( #6132 )
2017-11-08 14:05:53 -07:00
Yifan Zhu
96f70606e8
r-tiff: created new package ( #6134 )
2017-11-08 14:05:33 -07:00
lingnanyuan
f73b409968
r-anaquin: Create new package. ( #6138 )
2017-11-08 14:05:17 -07:00
lingnanyuan
2cba0d4d5f
r-qvalue: Create new package. ( #6137 )
2017-11-08 14:05:00 -07:00
baip
4273ebac3c
libxsmm: add libs property ( #6193 )
2017-11-08 14:04:26 -07:00
lingnanyuan
17b9a479b6
r-aneufinderdata: Create new package. ( #6192 )
2017-11-08 14:03:35 -07:00
lingnanyuan
bb619aa091
r-aneufinder: Create new package. ( #6191 )
2017-11-08 14:03:22 -07:00
