Massimiliano Culpo
11fa61665f
travis: use bionic as default for Linux ( #16521 )
...
Modifications:
- [x] Travis now uses `bionic` as a default (`xenial` used for Python 3.5, `trusty` for Python 2.6)
- [x] Shell unit tests have been factored into their own run
- [x] `kcov` is built only for tests that upload coverage results
Overall with this we shave 3-4 mins. on each run and add an additional run of about 3 min. For some reason `kcov` 38 fails forwarding output when used with Python unit tests, so I used v34 for that and v38 (latest) for shell testing. Previously we were using v25.
2020-05-12 13:56:01 -07:00
Adam J. Stewart
6b41fb88a9
py-threadpoolctl: add new package ( #16606 )
2020-05-12 14:33:10 -05:00
Nick Booher
9bdf4564db
revbayes: update for 1.1.0 ( #16603 )
...
* revbayes: update for 1.1.0
* revbayes: Fix flake8
2020-05-12 14:26:44 -05:00
Greg Becker
0307111dd8
bugfix: reorder variants in Spec strings ( #16462 )
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* change print order for variants to avoid zsh parsing bugs
* change tests for new variant parse order
2020-05-12 10:23:42 -07:00
Amjad Kotobi
154c0f5771
new version r-rcurl ( #16550 )
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* new version r-rcurl
* RCurl dependency R version updated
* Adding version conditions
2020-05-12 11:42:58 -05:00
Amjad Kotobi
78d8dd0815
new version r-cli ( #16553 )
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* new version r-cli
* r-cli : dependencies updated
* Adding version conditions for dependencies
2020-05-12 11:42:20 -05:00
Amjad Kotobi
bfa707dfc4
new version r-ellipsis ( #16556 )
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* new version r-ellipsis
* r-ellipsis : R dependency updated
* Adding version conditions for dependencies
2020-05-12 11:41:41 -05:00
Amjad Kotobi
d4c8c8b80d
r-rematch2 : new package ( #16563 )
...
* r-rematch2 : new package
* Updating URL
2020-05-12 11:41:20 -05:00
Amjad Kotobi
b99a5369ce
r-roxygen : dependencies and version updated ( #16565 )
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* r-roxygen : dependencies and version updated
* Dependencies updated for condition
2020-05-12 11:40:55 -05:00
Amjad Kotobi
7528e1eb45
r-purrr : dependencies and version update ( #16566 )
...
* r-purrr : dependencies and version update
* Dependencies updated for condition
2020-05-12 11:39:39 -05:00
Amjad Kotobi
173823e77d
r-rversions : new package ( #16572 )
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* r-rversions : new package
* URL updated r-rversions
2020-05-12 11:39:08 -05:00
Amjad Kotobi
14b80ecaf2
r-withr : dependencies and version updated ( #16577 )
...
* r-withr : dependencies and version updated
* Adding version conditions for dependencies
2020-05-12 11:36:25 -05:00
Amjad Kotobi
7c327ed447
r-knitr : dependencies and version updated ( #16579 )
...
* r-knitr : dependencies and version updated
* Adding version conditions for dependencies
2020-05-12 11:35:41 -05:00
Tomoki, Karatsu
278f8eb7fe
modylas: Add flag to use preprocessor when building with Fujitsu compiler. ( #16598 )
2020-05-12 11:34:28 -05:00
Jose E. Roman
8b06bd7198
New patch release SLEPc 3.13.2 ( #16601 )
2020-05-12 11:33:46 -05:00
Andrew W Elble
e36aa96392
py-horovod: link dependency for py-torch ( #16600 )
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fix for same reasons as #16495 .
2020-05-12 11:24:30 -05:00
Toyohisa Kameyama
7813e41464
caffe: fixed build error ( #16520 )
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* opencv 3.2 requires cmake 3.11 or older.
caffe dependency is changed.
* revert opencv variant to caffe.
backport to opencv errors.
2020-05-12 09:39:19 -05:00
Sergey Kosukhin
d1a5dc792e
py-dask: new version ( #16531 )
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* py-dask: new version
* py-dask: update the constraints.
* py-dask: add a list of maintainers.
2020-05-12 09:35:11 -05:00
Michael Kuhn
15112f9dba
gcc: fix several issues ( #16599 )
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- GCC has moved to Git
- The develop/master version requires flex
- Add myself as a maintainer
- Set the library path in the zstd patch
2020-05-12 13:56:58 +02:00
Todd Gamblin
a44f487a1d
z3: update python dependency ( #16597 )
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-[x] `z3` needs a dependency on `py-setuptools`
-[x] `z3` has a run dependency on `python`, so we might as well make
building with the python bindings default
2020-05-12 11:15:42 +02:00
Justin S
80e7a61597
prokka: new package at v1.14.6 ( #16282 )
2020-05-12 10:09:01 +02:00
Todd Gamblin
269bcfe1c8
clingo: update package ( #16594 )
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`clingo` has some undocumented dependencies:
- `bison`, for which the default macos version is too old
- `re2c`, which isn't always available
Also, the python installation was not set up properly. Clingo by default
does an install in `~/.local`, so we need to disable that and add a few
other options to get things right.
- [x] add `bison` dependency
- [x] add `re2c` dependency
- [x] make `doxygen` dependency optional (and patch if needed)
- [x] add options to fix `python` build
- [x] make python build optional but on by default
2020-05-12 09:41:31 +02:00
Tomoki, Karatsu
a59b92d303
xabclib: added support for Fujitsu compiler. ( #16596 )
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- Added Fujitsu compiler options that have the same functions as the options added for GCC
- Added option to link C objects
2020-05-12 09:40:11 +02:00
Sajid Ali
b526a90220
Charm++: fix build prefix; add ucx/pmi support ( #15666 )
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* Add pmi support (required by ucx, ofi, and gni backends)
* Add support for ucx backend
* Add dependency on MPI for pmi=simplepmi, slurmpmi, or slurmpmi2
* Remove charmpp as an MPI provider since the changes in this PR can
add MPI as a dependency (mentioned previously)
* Install into transport_protocol-OS-arch subdirectory to match
default charmpp installation behavior (which helps dependents find it)
2020-05-11 16:27:38 -07:00
Greg Becker
fa702b8311
python: add -fwrapv to cflags for python@3.8.0: %intel ( #16592 )
2020-05-11 18:02:56 -05:00
Michael Kuhn
35c3478fcd
fio: Add 3.19 ( #16571 )
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Earlier versions are not compatible with gcc@10:.
2020-05-11 16:54:28 -05:00
Michael Kuhn
97779e3539
adios: Fix build with gcc@10: ( #16569 )
2020-05-11 16:54:08 -05:00
asmaahassan90
1367b63e99
Add avizo version 2020.1 ( #16567 )
2020-05-11 12:56:50 -05:00
Adam J. Stewart
98fd62254f
py-plac: remove erroneous argparse dependency ( #16584 )
2020-05-11 12:56:07 -05:00
Michael Kuhn
5ed5c55ebd
mpich: Fix build with gcc@10: ( #16568 )
2020-05-11 12:55:36 -05:00
Massimiliano Culpo
43c9ad3421
Remove 'spack bootstrap' and associated docs ( #15179 )
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fixes #15145
This commit removes the outdated `spack bootstrap`
command and any reference to it in the documentation
and unit tests.
2020-05-11 10:55:18 -07:00
Amjad Kotobi
4c666034dc
r-rstudioapi : new version ( #16574 )
2020-05-11 12:49:27 -05:00
Amjad Kotobi
3ddf6c0845
r-rlang : new version ( #16575 )
2020-05-11 12:48:51 -05:00
Amjad Kotobi
5e348f7133
r-digest : version updated ( #16578 )
2020-05-11 12:43:38 -05:00
Andrew Gaspar
2c009a3226
Map the spack skylake arch to Kokkos BDW, rather than SKX ( #16583 )
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SKX includes AVX-512 extensions that consumer Skylake processors do
not have. Therefore, map Skylake to the prior arch to work on
these systems. Skylake-X processors will still map as the
skylake_avx512 spack arch and get the correct optimzations.
2020-05-11 12:33:34 -05:00
Justin S
20a4e5efe8
stata: add new libpng dependency ( #16582 )
2020-05-11 12:32:36 -05:00
Michael Kuhn
cd2e906702
netcdf-fortran: Fix build with gcc@10: ( #16573 )
2020-05-11 12:31:40 -05:00
Jen Herting
c220a22b69
New package: py-mmcv ( #16536 )
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* [py-mmcv] Created template
* [py-mmcv] added description and homepage
* [py-mmcv] requires python 3.6+
* [py-mmcv] added dependencies
* [py-mmcv] depends on opencv
* [py-mmcv] cleaned up fixmes
* [py-mmcv] requires numpy >= 1.11.1
2020-05-11 12:14:22 -05:00
Michael Kuhn
03d0a7ee1e
gcc: added v10.1.0 ( #16525 )
2020-05-11 16:22:19 +02:00
Sinan
ff6a0fc7b0
py-configobj: remove url function ( #16522 )
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It seems the pypi version of the package somehow compiles just fine
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-05-11 10:43:56 +02:00
takanori-ihara
e08792cbcb
py-jupyterlab: added package at v2.1.0 ( #16562 )
2020-05-11 10:35:44 +02:00
takanori-ihara
fa8dede6cd
Add new package:py-jupyterlab-server ( #16561 )
2020-05-10 21:32:53 -05:00
Adam J. Stewart
c03d4688e4
PyTorch: fix master and mkldnn builds ( #16560 )
2020-05-10 19:40:00 -05:00
Amjad Kotobi
7d3b40fba4
new version r-rcpp ( #16549 )
2020-05-10 17:39:20 -05:00
Amjad Kotobi
6c820dd6b5
new version r-glue ( #16558 )
2020-05-10 17:38:51 -05:00
Amjad Kotobi
36941e3d94
new version r-pkgbuild ( #16559 )
2020-05-10 17:38:38 -05:00
Amjad Kotobi
5dc51c21bb
new version r-jsonlite ( #16557 )
2020-05-10 17:38:26 -05:00
Amjad Kotobi
f32d561e9b
new version r-dt ( #16555 )
2020-05-10 15:31:58 -05:00
Amjad Kotobi
3210e5999e
new version r-covr ( #16554 )
2020-05-10 15:31:08 -05:00
Amjad Kotobi
ff869a7d68
new version r-callr ( #16552 )
2020-05-10 15:29:18 -05:00
