healther
0cff0fba73
fix post install method for py3 in mercurial ( #6497 )
...
* fix post install method for py3 in mercurial
* Update package.py
* Update package.py
* use print_str instead of manual print detection
* Update package.py
* use only depends_on
* Update package.py
* Update package.py
State py3 compatibility for @4.3: according to setup.py from the 4.3.tar.gz from pypi
2017-12-17 12:00:58 -06:00
Sergey Kosukhin
576ef5e2b3
Package 'cdo': get rid of unnecessary dependency on MPI C++ library. ( #6632 )
2017-12-16 19:48:56 -07:00
nshtg
2a639097b0
Add new package signify ( #6645 )
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OpenBSD tool to sign and verify signatures on files.
See https://github.com/aperezdc/signify
2017-12-16 19:47:59 -07:00
Eric
7d800a0fc2
breseq: Create new package ( #6648 )
2017-12-16 19:47:11 -07:00
fpruvost
6c81cf1a78
build lapacke with tmg ( #6654 )
2017-12-16 19:43:46 -07:00
David Orman
7b8d889d31
bwa: added version 0.7.16a and checksum ( #6658 )
2017-12-16 19:43:02 -07:00
Jack Morrison
d4cc1ac86b
Hadoop: Replace broken url ( #6671 )
2017-12-16 19:42:03 -07:00
David Böhme
3467c207c8
Caliper update, add version 1.6.0 ( #6680 )
2017-12-16 19:39:52 -07:00
Eric
dac09dd5fb
py-bx-python: Create new package ( #6672 )
2017-12-16 19:38:59 -07:00
Eric
d08dc0c019
py-tetoolkit: Create new package ( #6673 )
2017-12-16 19:38:36 -07:00
Eric
d3545ed1b3
py-pandas: add versions 0.19.2 and 0.21.1 ( #6687 )
2017-12-16 19:38:02 -07:00
Paschalis Korosoglou
a69cfd5f78
Add petsc version 3.8.3 ( #6688 )
2017-12-16 19:37:35 -07:00
Paschalis Korosoglou
61dbd3182d
Add clanguage variant for petsc ( #6689 )
2017-12-16 19:37:20 -07:00
Eric
87420dccee
bedtools2: Add version 2.27.1 ( #6693 )
2017-12-16 19:36:35 -07:00
peetsv
5d0e7abcc5
MetaSV: adding new package ( #6691 )
2017-12-16 19:36:11 -07:00
Eric
5539c94e67
PANDAseq: Create new package ( #6694 )
2017-12-16 19:35:48 -07:00
Eric
554d4045fa
DeNovoGear: Create new package ( #6699 )
2017-12-16 19:34:53 -07:00
lingnanyuan
34cf796b54
mefit: Create new package. ( #6700 )
2017-12-16 19:34:30 -07:00
Denis Davydov
f78418d8bb
moltemplate: add new package ( #6702 )
2017-12-16 19:33:28 -07:00
David Orman
176b518d4b
new package: gatk ( #6674 )
2017-12-15 11:00:55 -08:00
Jon Rood
7369ba21bf
new package: Percept ( #6636 )
...
This also adds the 'exception' boost library to the set of default
libraries built by boost.
2017-12-14 18:11:47 -08:00
Douglas Duckworth
1aed3f7c01
added breakdancer ( #6319 )
2017-12-14 14:43:32 -07:00
Massimiliano Culpo
6c1fa37e3d
fftw: added version 3.3.7 ( #6678 )
2017-12-14 21:38:33 +01:00
Jon Rood
b447c2ba51
Add TIOGA package and optional dependency of Nalu on TIOGA ( #6638 )
2017-12-14 11:46:25 -08:00
Scott Wittenburg
ce832fca59
libharu: Make dependencies on zlib and libpng explicit ( #6682 )
2017-12-14 08:58:42 +01:00
Douglas Duckworth
5a66065dfa
relion: add version and cuda arch variant ( #6317 )
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Add preferred version 2.0.3. Added beta version. Added conflict with
gcc versions >= 5 when building with cuda@8 (which is currently the
only supported cuda version). Added cuda architecture variant. Added
comment about current lack of cuda@9 support.
2017-12-13 10:30:38 -08:00
Denis Davydov
c0aa12111b
tasmanian: add new package ( #6659 )
2017-12-13 16:01:51 +01:00
Axel Huebl
836bf65250
CUDA: 9.1 ( #6663 )
...
Add the latest CUDA release, 9.1
2017-12-13 14:43:40 +01:00
peetsv
2e4c9e47a8
py-pysam: adding old version 0.7.7 ( #6675 )
2017-12-13 09:01:45 +01:00
Eric
5fa9e61321
SPAdes: add version 3.11.1 ( #6668 )
2017-12-13 08:57:29 +01:00
David Orman
c5cb8ae159
picard: added version 2.13.2 ( #6669 )
2017-12-13 08:57:06 +01:00
Audrey Thoma
45784af7f2
new packages: biopieces and dependencies ( #6478 )
...
This also adds the tcl, tk, and libx11 dependencies to ruby. All other
changes are new packages.
2017-12-12 18:35:13 -08:00
Christoph Junghans
27be66420a
laghos: inject CXX ( #6664 )
2017-12-12 17:26:02 -07:00
Christoph Junghans
e80a27d713
swfft: inject CC/CXX ( #6666 )
2017-12-12 17:25:48 -07:00
Satish Balay
80284617a5
xsdk: update xsdk@develop to use sundials, plasma, magma ( #6649 )
...
Also update xsdk@0.3.0 to use a fixed version of magma
2017-12-12 09:31:08 -08:00
nshtg
e831ecbf3a
Add new package minisign ( #6644 )
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A dead simple tool to sign files and verify signatures.
See https://jedisct1.github.io/minisign
2017-12-11 17:27:40 -07:00
nshtg
45e8e4b4fb
libsodium: Update to 1.0.15 ( #6643 )
2017-12-11 17:27:09 -07:00
nshtg
25aa21a7a7
git: Update to 2.15.1 ( #6642 )
2017-12-11 17:26:53 -07:00
nshtg
74938f58d2
openssl: Update to 1.0.2n ( #6641 )
...
From 07.12.2017, fixes CVE-2017-3737
2017-12-11 17:26:37 -07:00
Brian Van Essen
6fec473e9e
Py h5py update ( #6635 )
2017-12-11 17:26:13 -07:00
健美猫
e19aa80734
intel-parallel-studio: restrict patch to versions > 2016 ( #6523 )
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Fixes #6522
Patch psxevars.sh and psxevars.csh only when year > 2016.
pxevars.csh does not exist for versions before 2017. psxevars.sh
does not appear to require this patch for versions before 2017.
2017-12-11 13:14:24 -08:00
Johann Klähn
e83c3d1b6a
bazel: include SPACK_DEBUG_LOG_ID in environment ( #6562 )
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Fixes #6521 .
Bazel's build system filters environment variables, including those
set by Spack for use by its compiler wrapper. This updates the patch
to include the SPACK_DEBUG_LOG_ID variable added in #5837 .
2017-12-11 10:34:06 -08:00
Satish Balay
53b2ec356b
disable plasma in xsdk 0.3.0 ( #6621 )
2017-12-10 17:51:54 -08:00
Adam J. Stewart
f41a263a28
Fix reference to self.versions in neovim package ( #6639 )
2017-12-10 21:43:49 +01:00
Cyrus Harrison
95a384f051
updates to conduit and ascent packages (new PR) ( #6584 )
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* optional path to use spacks py-site-pkgs, install host-cfg for provenance
* add more comments and address review requests
* only use st-pkgs-dir when +python
* ascent does not need doxygen
* capture mpiexec if it exists
* added missing import
* flake8 fix
* default adios variant to False
* ascent develop now reqs conduit master
* optional path to use spacks py-site-pkgs, install host-cfg for provenance
* add more comments and address review requests
* only use st-pkgs-dir when +python
* ascent does not need doxygen
* capture mpiexec if it exists
* added missing import
* flake8 fix
* default adios variant to False
* ascent develop now reqs conduit master
* conduit: use hdf5 1.8 for wider output compat
2017-12-08 13:43:12 -08:00
Chris Green
e279299b9b
Relax restriction on lua version. ( #5886 )
2017-12-08 20:52:00 +01:00
Thilina Rathnayake
c1bc1be2a7
Add NekCEM package to spack ( #6509 )
2017-12-08 10:30:42 -07:00
Thilina Rathnayake
d6db532095
Update the Nekbone package ( #6508 )
2017-12-08 10:29:58 -07:00
healther
4c02e7e9f4
add restriction to py-setuptools dependency on py-flake8 ( #6589 )
2017-12-08 10:22:52 -07:00
Eric
bb8e7ee023
Perl-statistics-descriptive: Create new package ( #6588 )
2017-12-08 10:22:16 -07:00
