Massimiliano Culpo
0480afe29d
CI: avoid issues with Ubuntu patched git by adding safe.directory ( #30042 )
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Ubuntu patched git v2.25.1 with a security fix that also
introduced a breaking change, so v2.25.1 behaves like
v2.35.2 with respect to the use cases in CVE-2022-24765
2022-04-13 11:10:00 +00:00
Harmen Stoppels
cb56e9b745
libbsd: fixes for %nvhpc ( #29848 )
2022-04-13 11:24:02 +02:00
renjithravindrankannath
6a8aa59717
reverting the changes present in 29017 as CFLAGS and CXXFLAGS which overrides defaults in other packages ( #30036 )
2022-04-13 08:29:56 +02:00
Daryl W. Grunau
110ade1804
Apply llvm7_intel.patch with intel@19.1.3 ( #29955 )
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* llvm7_intel.patch required for intel@19.1.3 too
* apply llvm7_intel.patch forall intel@19.0 and intel@19.1
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2022-04-12 15:38:11 -07:00
Adam J. Stewart
5db279f986
py-numpy: add v1.21.6 ( #30034 )
2022-04-12 22:30:13 +00:00
Sergey Kosukhin
67a90a644f
hdf5: remove redundant dependency on numactl ( #29914 )
2022-04-12 14:55:28 -07:00
Jose E. Roman
fef84f2265
New patch release SLEPc 3.17.1 ( #30010 )
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Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2022-04-12 14:50:32 -07:00
Kyle Gerheiser
b0e35dffa3
Add grib_util v1.2.4 ( #30033 )
2022-04-12 13:32:19 -07:00
Nathan Hanford
a3520d14bd
Splice differing virtual packages ( #27919 )
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Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2022-04-12 13:31:39 -07:00
psakievich
7d534f38d6
Don't allow replacement of root develop specs with --reuse ( #28605 )
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* Fix to concretize.lp
do not allow dev specs to be reused
Co-authored-by: Gregory Becker <becker33@llnl.gov>
2022-04-12 10:37:24 -07:00
Peter Scheibel
2aec5b65f3
Git commit versions bugfix: Environments and Concretization ( #29717 )
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Spack added support in #24639 for ad-hoc Git-commit-hash-based
versions: A user can install a package x@hash, where X is a package
that stores its source code in a Git repository, and the hash refers
to a commit in that repository which is not recorded as an explicit
version in the package.py file for X.
A couple issues were found relating to this:
* If an environment defines an alternative package repo (i.e. with
repos.yaml), and spack.yaml contains user Specs with ad-hoc
Git-commit-hash-based versions for packages in that repo,
then as part of retrieving the data needed for version comparisons
it will attempt to retrieve the package before the environment's
configuration is instantiated.
* The bookkeeping information added to compare ad-hoc git versions was
being stripped from Specs during concretization (such that user
Specs which succeeded before concretizing would then fail after)
This addresses the issues:
* The first issue is resolved by deferring access to the associated
Package until the versions are actually compared to one another.
* The second issue is resolved by ensuring that the Git bookkeeping
information is explicitly applied to Specs after they are concretized.
This also:
* Resolves an ambiguity in the mock_git_version_info fixture used to
create a tree of Git commits and provide a list where each index
maps to a known commit.
* Isolates the cache used for Git repositories in tests using the
mock_git_version_info fixture
* Adds a TODO which points out that if the remote Git repository
overwrites tags, that Spack will then fail when using
ad-hoc Git-commit-hash-based versions
2022-04-12 09:58:26 -07:00
Mikael Simberg
17e2fb0ef6
Add missing Boost dependencies to pika+generic_coroutines variant ( #30026 )
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Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-04-12 12:36:14 +02:00
Carlos Bederián
ce09b42cdd
curl: nss deprecated since 7.82 ( #30020 )
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* curl: nss deprecated since 7.82
2022-04-12 03:30:24 -06:00
Brian Van Essen
433d404a93
lbann (and related stack): avoid bug in cmake 3.23.0 ( #30019 )
2022-04-12 08:56:48 +02:00
Massimiliano Culpo
8d56728984
vmd: remove custom phases
2022-04-12 08:39:15 +02:00
Massimiliano Culpo
39b58abd9c
siesta: remove custom phases
2022-04-12 08:39:15 +02:00
Massimiliano Culpo
d7a6cb3e53
qbank: remove custom phases
2022-04-12 08:39:15 +02:00
Massimiliano Culpo
fd724fb38d
py-sip: remove custom phases
2022-04-12 08:39:15 +02:00
Massimiliano Culpo
2bb9eeac28
py-gosam: remove custom phases
2022-04-12 08:39:15 +02:00
Massimiliano Culpo
b7ce6a5ec1
openmx: remove custom phases
2022-04-12 08:39:15 +02:00
Massimiliano Culpo
1999135cab
ntl: remove custom phases
2022-04-12 08:39:15 +02:00
Massimiliano Culpo
a708844e87
nsimd: remove custom phases, refactor variants
2022-04-12 08:39:15 +02:00
Massimiliano Culpo
4dd5bcb3ef
npb: remove custom phases
2022-04-12 08:39:15 +02:00
liuyangzhuan
dc44642bfb
bump py-statsmodels versions to 0.13.2 for gptune ( #29972 )
2022-04-11 17:10:28 -06:00
Doug Jacobsen
a9b4f33f23
Update gpg publish to work with mirror arguments ( #28740 )
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This commit updates the `gpg publish` command to work with the mirror
arguments, when trying to push keys to a mirror.
- [x] update `gpg publish command
- [x] add test for publishing GPG keys and rebuilding the key index within a mirror
2022-04-11 14:48:08 -07:00
Sergey Kosukhin
6e5cba7b82
cray platform: unload cray-mpich ( #29898 )
2022-04-11 14:34:09 -07:00
Ken Raffenetti
b45e734b59
mpich: add v4.0.2 ( #30012 )
2022-04-11 15:22:34 -06:00
marcosmazz
624077e629
Fix typo in package wrf ( #30014 )
2022-04-11 14:11:19 -07:00
iarspider
da0a7836f3
ROOT: allow c++20, default to c++14 ( #30006 )
2022-04-11 12:39:11 -07:00
Massimiliano Culpo
271f0c024a
libceed: remove custom phases, slight refactor of variants ( #29970 )
2022-04-11 20:20:25 +02:00
Harmen Stoppels
8deb50fea5
zstd: bring back libs=shared,static and compression=zlib,lz4,lzma variants ( #29995 )
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* zstd: bring back libs=shared,static and compression=zlib,lz4,lzma variants
Should make building `gcc+binutils ^zstd libs=static` a bit easier (this
is the case where we don't control the compiler wrappers of gcc because
of bootstrapping, nor of ld because of how gcc invokes the linker).
2022-04-11 09:30:30 -06:00
Cory Bloor
b71661eaa6
rocmlibs: cleanup amdgpu_target variant behaviour ( #28907 )
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* Use auto_or_any_combination_of for AMD GPU architecture variant
* Make consistent rocmlibs amdgpu_target variants
* Propagate amdgpu_target variant
* Fix amdgpu_target=auto
* Fix amdgpu_target=auto setting HCC_AMDGPU_TARGET
* Tighten HIP CMake requirements
Co-authored-by: Teodor Nikolov <teodor.nikolov22@gmail.com>
2022-04-11 15:08:28 +02:00
Massimiliano Culpo
f110d0848a
nasm: remove custom phases ( #29986 )
2022-04-11 15:07:15 +02:00
Massimiliano Culpo
b033dbbbd0
minigmg: remove custom phases
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
1a999d6e2d
minigmg: remove custom phases
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
9740c3b300
mg: remove custom phases, turn it into a Makefile package
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
b9d12df7a9
memkind: remove custom phases, add v1.13.0
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
a9a7ac71fa
madgraph5amc: remove custom phases
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
c8f37797a4
matlab: remove custom phases
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
6bdd9db594
libplist: remove custom phases, make it an Autotools package
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
92531ca773
libimagequant: remove custom phases, make it a Makefile package
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
495dd61218
libgridxc: remove custom phases, make it a Makefile package
2022-04-11 11:42:45 +02:00
Massimiliano Culpo
d0ad644ea6
Remove custom phases in packages (1/n) ( #29968 )
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* abi-dumper: remove custom phases
* apktool: remove custom phases, add v2.6.1
* aragorn: remove custom phases
* ascent: remove custom phases
* astral: remove custom phases, add v5.7.1
* bigdft: remove redundant phase definitions
* bazel: remove custom phases phase definitions
* blasr: remove custom phases phase definitions
* bmake: remove custom phases phase definitions, add v20220330
* botan: remove custom phases phase definitions
* breakdancer: remove custom phases phase definitions
* dnstracer: remove custom phases phase definitions
* conduit: remove custom phases phase definitions
* eclipse-gcj-parser: remove custom phases phase definitions
* eem: remove custom phases phase definitions
* fasttree: remove custom phases phase definitions
* fleur: remove custom phases phase definitions
* fpm: remove custom phases phase definitions
* genie: remove custom phases phase definitions
* gluegen: remove custom phases phase definitions
* gnat: remove custom phases phase definitions
* hpgmg: remove custom phases phase definitions
* karma: remove custom phases phase definitions
* libc: remove custom phases phase definitions
2022-04-11 11:39:50 +02:00
Sebastian Pipping
c2f470f4a6
expat: Deprecate 2.4.6 ( #29973 )
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* expat: Deprecate 2.4.6
* expat: Increase detail on deprecation of 2.4.5
2022-04-11 03:22:32 -06:00
Adam J. Stewart
831346a3fb
py-pyupgrade: add new package ( #29747 )
2022-04-11 11:00:32 +02:00
AMD Toolchain Support
ae76834f3d
Python: fix build with AOCC compiler ( #28708 )
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-04-11 02:50:29 -06:00
dependabot[bot]
714573cdbc
build(deps): bump actions/setup-python from 3.1.0 to 3.1.1 ( #29956 )
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Bumps [actions/setup-python](https://github.com/actions/setup-python ) from 3.1.0 to 3.1.1.
- [Release notes](https://github.com/actions/setup-python/releases )
- [Commits](9c644ca2ab...21c0493ecf
2022-04-11 10:50:08 +02:00
Glenn Johnson
7d67577156
heasoft: add new package ( #29841 )
2022-04-11 10:47:38 +02:00
Wouter Deconinck
7dc569ceeb
intel-oneapi-compilers package: add rpath for lib/ directory ( #29931 )
2022-04-11 02:22:34 -06:00
Sajid Ali
7475eba798
cereal: add v1.3.1, v1.3.2 ( #29385 )
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Restrict lbann to use v1.3.0 of this package
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-11 10:19:48 +02:00
