Commit graph

33649 commits

Author SHA1 Message Date
Massimiliano Culpo
000fe1b5a1 Set version to 0.21.2.dev0 2024-02-29 11:35:38 +01:00
Massimiliano Culpo
e30fedab10 Update CHANGELOG and version 2024-01-12 10:16:58 +01:00
eugeneswalker
a7c6df1b5a e4s ci: disable gpu test stack (#41296) 2024-01-12 10:16:58 +01:00
Harmen Stoppels
19e86088cd binary_distribution.py: support build cache layout 2 (#41773)
Add forward compatibility for tarballs created by Spack 0.22, which
use build cache layout version 2.

Spack 0.21 continues to produce build cache layout version 1 tarballs.

Build cache layout version 2 also lists parent directories of the
package prefix in the tarball, which is required for certain container
runtimes.
2024-01-11 09:40:22 +01:00
Harmen Stoppels
0295b466d7 Dont expect __qualname__ to exist (#41989) 2024-01-11 09:40:22 +01:00
Harmen Stoppels
68e9547615 installer.py: do not tty.die when cache only fails (#41990) 2024-01-11 09:40:22 +01:00
Harmen Stoppels
0ab9c8b904 installer.py: don't dereference stage before installing from binaries (#41986)
This fixes an issue where pkg.stage throws because a patch cannot be found,
but the patch is redundant because the spec is reused from a build cache and
will be installed from existing binaries.
2024-01-11 09:40:22 +01:00
Miguel Dias Costa
dd768bb6c3 update BerkeleyGW source urls (#38218)
* update url for BerkeleyGW version 3.0.1
* update source urls and add version 3.1.0 to berkeleygw package
2024-01-11 09:40:22 +01:00
Harmen Stoppels
b15f9d011c Spec.format: error on old style format strings (#41934) 2024-01-11 09:40:22 +01:00
Massimiliano Culpo
4f7cce68b8 ASP-based solver: don't error for type mismatch on preferences (#41138)
This commit discards type mismatches or failures to validate a package preference during concretization. The values discarded are logged as debug level messages. It also adds a config audit to help users spot misconfigurations in packages.yaml preferences.
2024-01-11 09:40:22 +01:00
Massimiliano Culpo
f39a1e5fc8 Fix an issue with deconcretization/reconcretization of environments (#41294) 2024-01-11 09:40:22 +01:00
Massimiliano Culpo
df2a3bd531 ASP-based solver: use a unique ID counter (#41290)
* solver: use a unique counter for condition, triggers and effects

* Do not reset counters when re-running setup

  What we need is just a unique ID, it doesn't need
  to start from zero every time.
2024-01-11 09:40:22 +01:00
Todd Gamblin
e29049d9c0 bugfix: sort variants in spack info --variants-by-name (#41389)
This was missed while backporting the new `spack info` command from #40326.

Variants should be sorted by name when invoking `spack info --variants-by-name`.
2024-01-11 09:40:22 +01:00
Stephen Sachs
de2249c334 clingo-bootstrap: use new Spack API for environment modifications (#41574) 2024-01-11 09:40:22 +01:00
Harmen Stoppels
03d7643480 tests: fix more cases of env variables (#41226) 2024-01-11 09:40:22 +01:00
Massimiliano Culpo
9f2b8eef7a Refactor a test to not use the "working_env" fixture (#41308)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-01-11 09:40:22 +01:00
Harmen Stoppels
f57ac8d2da tests: fix issue with os.environ binding (#41342) 2024-01-11 09:40:22 +01:00
Harmen Stoppels
539fa5c39a test_variant_propagation_with_unify_false: missing fixture (#41345) 2024-01-11 09:40:22 +01:00
Harmen Stoppels
50710c2b6e tests: fix side effects of default_config fixture (#41361)
* tests: default_config drop scope

* use default_config elsewhere

* use parse_install_tree for missing defaults in default config
2024-01-11 09:40:22 +01:00
Harmen Stoppels
f1b2515ce1 tests: add missing mutable db (#41359) 2024-01-11 09:40:22 +01:00
Harmen Stoppels
37f65e769c unit tests: replace /bin/bash with /bin/sh (#41495) 2024-01-11 09:40:22 +01:00
Harmen Stoppels
16b600c193 tests: use temporary_store (#41369) 2024-01-11 09:40:22 +01:00
Harmen Stoppels
bb62f71aa0 asp.py: remove "CLI" reference (#41718)
Can also be an environment root, or programatically
`Spec("x").concretized()`.
2024-01-11 09:40:22 +01:00
Juan Miguel Carceller
fff8e16cdd Add a webgui patch (#41404)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-01-11 09:40:22 +01:00
Dave Keeshan
33c287eed8 Fix filter_compiler_wrapper where compiler is None (#41502)
Fix filer_compiler_wrapper for cases where the compiler returned in None, this happens on some installed gcc systems that do not have fortran built into them as standard, e.g. gcc@11.4.0 on ubuntu 22.04
2024-01-11 09:40:22 +01:00
Robert Cohn
2d5ccd3068 handle use of an unconfigured compiler (#41213) 2024-01-10 20:28:14 +01:00
Michael Kuhn
125085c580 Fix multi-word aliases (#41126)
PR #40929 reverted the argument parsing to make `spack --verbose
install` work again. It looks like `--verbose` is the only instance
where this kind of argument inheritance is used since all other commands
override arguments with the same name instead. For instance, `spack
--bootstrap clean` does not invoke `spack clean --bootstrap`.

Therefore, fix multi-line aliases again by parsing the resolved
arguments and instead explicitly pass down `args.verbose` to commands.
2024-01-10 20:28:14 +01:00
Massimiliano Culpo
e70e401be1 spack graph: fix coloring with environments (#41240)
If we use all specs, we won't color correctly build-only dependencies
2024-01-10 20:28:14 +01:00
John W. Parent
e8bbd7763c MSVC preview version breaks clingo build (#41185)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2024-01-10 20:28:14 +01:00
Harmen Stoppels
712db8c85c setup_platform_environment before package env mods (#41205)
This roughly restores the order of operation from Spack 0.20,
where where `AutotoolsPackage.setup_build_environment` would
override the env variable set in `setup_platform_environment` on
macOS.
2024-01-10 20:28:14 +01:00
Massimiliano Culpo
47c560d526 ASP-based solver: don't emit spurious debug output (#41218)
When improving the error message, we started #showing in the
answer set a lot more symbols - but we forgot to suppress the
debug messages warning about UNKNOWN SYMBOLs
2024-01-10 20:28:14 +01:00
Harmen Stoppels
5b386cf9b1 test_which: do not mutate os.environ 2024-01-10 20:28:14 +01:00
Harmen Stoppels
2cbe84b1ee docs: document how spack picks a version / variant (#41070) 2024-01-10 20:28:14 +01:00
Massimiliano Culpo
e1f98fd206 Improve the error message for deprecated preferences (#41075)
Improves the warning for deprecated preferences, and adds a configuration
audit to get files:lines details of the issues.

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-01-10 20:28:14 +01:00
Massimiliano Culpo
d5ef4f8c83 Add audit check to spot when= arguments using wrong named specs (#41107)
* Add audit check to spot when= arguments using named specs

* Fix package issues caught by the new audit
2024-01-10 20:28:14 +01:00
Harmen Stoppels
b49022822d docs: packages config on separate page, demote bootstrapping (#41085) 2024-01-10 20:28:14 +01:00
Massimiliano Culpo
198bd87914 Fix infinite recursion when computing concretization errors (#41061) 2024-01-10 20:28:14 +01:00
Harmen Stoppels
080a781b81 Set version to 0.21.1.dev0 2024-01-10 20:28:14 +01:00
Todd Gamblin
65d3221a9c Update version and CHANGELOG.md for v0.21.0
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-11-11 03:32:22 -08:00
Todd Gamblin
f6b17f6329 update release branch for tutorial command 2023-11-11 03:32:22 -08:00
Greg Becker
09e9bb5c3d spack deconcretize command (#38803)
We have two ways to concretize now:
* `spack concretize` concretizes only the root specs that are not concrete in the environment.
* `spack concretize -f` eliminates all cached concretization data and reconcretizes the *entire* environment.

This PR adds `spack deconcretize`, which eliminates cached concretization data for a spec.  This allows
users greater control over what is preserved from their `spack.lock` file and what is reused when not
using `spack concretize -f`.  If you want to update a spec installed in your environment, you can call
`spack deconcretize` on it, and that spec and any relevant dependents will be removed from the lock file.

`spack concretize` has two options:
* `--root`: limits deconcretized specs to *specific* roots in the environment. You can use this to
  deconcretize exactly one root in a `unify: false` environment.  i.e., if `foo` root is a dependent
  of `bar`, both roots, `spack deconcretize bar` will *not* deconcretize `foo`.
* `--all`: deconcretize *all* specs that match the input spec. By default `spack deconcretize`
  will complain about multiple matches, like `spack uninstall`.
2023-11-11 03:32:22 -08:00
Massimiliano Culpo
f6dc557764 builtin.repo: fix ^mkl pattern in minor packages (#41003)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-11-11 03:32:22 -08:00
Massimiliano Culpo
74172fb9d2 gromacs et al: fix ^mkl pattern (#41002)
The ^mkl pattern was used to refer to three packages
even though none of software using it was depending
on "mkl".

This pattern, which follows Hyrum's law, is now being
removed in favor of a more explicit one.

In this PR gromacs, abinit, lammps, and quantum-espresso
are modified.

Intel packages are also modified to provide "lapack"
and "blas" together.
2023-11-11 03:32:22 -08:00
Harmen Stoppels
c266e69cde env: compute env mods only for installed roots (#40997)
And improve the error message (load vs unload).

Of course you could have some uninstalled dependency too, but as long as
it doesn't implement `setup_run_environment` etc, I don't think it hurts
to attempt to load the root anyways, given that failure to do so is a
warning, not a fatal error.
2023-11-11 03:32:22 -08:00
Todd Gamblin
fe57ec2ab7 info: rework spack info command to display variants better (#40998)
This changes variant display to use a much more legible format, and to use screen space
much better (particularly on narrow terminals). It also adds color the variant display
to match other parts of `spack info`.

Descriptions and variant value lists that were frequently squished into a tiny column
before now have closer to the full terminal width.

This change also preserves any whitespace formatting present in `package.py`, so package
maintainers can make easer-to-read descriptions of variant values if they want. For
example, `gasnet` has had a nice description of the `conduits` variant for a while, but
it was wrapped and made illegible by `spack info`. That is now fixed and the original
newlines are kept.

Conditional variants are grouped by their when clauses by default, but if you do not
like the grouping, you can display all the variants in order with `--variants-by-name`.
I'm not sure when people will prefer this, but it makes it easier to tell that a
particular variant is/isn't there. I do think grouping by `when` is the better default.
2023-11-11 03:32:22 -08:00
Adam J. Stewart
3c3476a176 py-black: add v23.10: (#40959) 2023-11-11 03:32:22 -08:00
Scott Wittenburg
67f20c3e5c buildcache: skip unrecognized metadata files (#40941)
This commit improves forward compatibility of Spack with newer build cache metadata formats.

Before this commit, invalid or unrecognized metadata would be fatal errors, now they just cause
a mirror to be skipped.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-11-11 03:32:22 -08:00
Satish Balay
1baf712b87 intel-oneapi-mkl: do not set __INTEL_POST_CFLAGS env variable (#40947)
This triggers warnings from icx compiler - that breaks petsc configure

$ I_MPI_CC=icx /opt/intel/oneapi/mpi/2021.7.0/bin/mpiicc -E a.c > /dev/null
$ __INTEL_POST_CFLAGS=-Wl,-rpath,/opt/intel/oneapi/mkl/2022.2.0/lib/intel64 I_MPI_CC=icx /opt/intel/oneapi/mpi/2021.7.0/bin/mpiicc -E a.c > /dev/null
icx: warning: -Wl,-rpath,/opt/intel/oneapi/mkl/2022.2.0/lib/intel64: 'linker' input unused [-Wunused-command-line-argument]
2023-11-09 11:44:57 +01:00
Massimiliano Culpo
c73ec0b36d modules: remove deprecated code and test data (#40966)
This removes a few deprecated attributes from the
schema of the "modules" section. Test data for
deprecated options is removed as well.
2023-11-09 11:44:57 +01:00
Harmen Stoppels
9d58d5e645 modules: restore exclude_implicits (#40958) 2023-11-09 11:44:57 +01:00