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Author SHA1 Message Date
snehring
a8285f0eec
vcftools: add v0.1.16 (#40805) 
* vcftools: adding new version 0.1.16

* Update var/spack/repos/builtin/packages/vcftools/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
 2023-11-01 16:33:12 -07:00
Adam J. Stewart
e7456e1aab
py-matplotlib: add v3.8.1 (#40819) 2023-11-01 16:33:00 -07:00
Jeremy L Thompson
dd636dd3fb
libCEED v0.12.0, Ratel v0.3.0 (#40822) 
* ratel - add v0.3.0
* libceed - add version 0.12.0
 2023-11-01 16:29:18 -07:00
Mikael Simberg
a73c95b734
pika: Add 0.20.0 (#40817) 2023-11-01 17:19:56 -06:00
Miroslav Stoyanov
33b355a085
heffte: add v2.4.0 (#40741) 
* update the heffte versions

* remove obsolete patch files

* update testing

* style

* restore version (unknown reason)

* restore old patch

* change the syntax

* [@spackbot] updating style on behalf of mkstoyanov

* missed one

* style
 2023-11-01 16:54:11 -06:00
Satish Balay
f7630f265b
pflotran: add version 5.0.0 (#40828) 
alquimia: add version 1.1.0
And fix alquimia@master
 2023-11-01 15:16:04 -07:00
dependabot[bot]
9744e86d02
build(deps): bump black in /.github/workflows/style (#40681) 
Bumps [black](https://github.com/psf/black) from 23.9.1 to 23.10.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.9.1...23.10.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-11-01 14:20:29 -07:00
Harmen Stoppels
ff6bbf03a1
changelog: add 0.20.2 and 0.20.3 changes (#40818) 2023-11-01 22:09:11 +01:00
Cameron Rutherford
0767c8673e
hiop: fix cuda constraints and add tag to versions (#40721) 
* hiop: fix cuda constraints and add tag to versions

* hiop: fix styling
 2023-11-01 13:21:14 -07:00
Satish Balay
9aa75eaf65
superlu-dist: -std=c99 prevents usage of putenv() (#40729) 2023-11-01 12:44:13 -07:00
Weiqun Zhang
73f012b999
amrex: add v23.11 (#40821) 2023-11-01 12:38:02 -07:00
Satish Balay
c7a8a83cbf
petsc, py-petsc4py: add v3.20.1 (#40794) 2023-11-01 12:37:53 -07:00
Satish Balay
5f87db98ea
butterflypack: add version 2.4.0 (#40826) 2023-11-01 12:20:13 -07:00
Brian Van Essen
d05dc8a468
LBANN: add explicit variant for shared builds (#40808) 2023-11-01 13:18:57 -06:00
wspear
afa2a2566e
Add 2.33 to tau (#40810) 2023-11-01 12:10:35 -07:00
Thomas Madlener
581f45b639
podio: Add latest tags and variants and update dependencies accordingly (#40182) 
* Make sure sio is in dependent build env for podio

* podio: Fix likely(?) typo in root dependency

* podio: Add latest tag and new variants + dependencies

* podio: Add v00-16-07 tag

* podio: Fix dependencies flagged by package audit

* podio: Simplify root dependency

* podio: Add 0.17.1 tag
 2023-11-01 13:44:11 -05:00
Bilal Mirza
92780a9af6
fix: sentence framing (#40809) 2023-11-01 11:41:37 +01:00
Harmen Stoppels
2ea8e6c820
Executable.add_default_arg: multiple (#40801) 2023-11-01 09:14:37 +01:00
Harmen Stoppels
ac976a4bf4
Parser: fix ambiguity with whitespace in version ranges (#40344) 
Allowing white space around `:` in version ranges introduces an ambiguity:

```
a@1: b
```

parses as `a@1:b` but should really be parsed as two separate specs `a@1:` and `b`.

With white space disallowed around `:` in ranges, the ambiguity is resolved.
 2023-11-01 09:08:57 +01:00
Harmen Stoppels
e5f3ffc04f
SetupContext.get_env_modifications fixes and documentation (#40683) 
Call setup_dependent_run_environment on both link and run edges,
instead of only run edges, which restores old behavior.

Move setup_build_environment into get_env_modifications

Also call setup_run_environment on direct build deps, since their run
environment has to be set up.
 2023-11-01 08:47:15 +01:00
Harmen Stoppels
7aaed4d6f3
Revert python build isolation & setuptools source install (#40796) 
* Revert "Improve build isolation in PythonPipBuilder (#40224)"

This reverts commit 0f43074f3e.

* Revert "py-setuptools: sdist + rpath patch backport (#40205)"

This reverts commit 512e41a84a.
 2023-11-01 07:10:34 +01:00
Tamara Dahlgren
f5d717cd5a
Fix env remove indentation (#40811) 2023-11-01 00:08:46 -06:00
Sreenivasa Murthy Kolam
cb018fd7eb
Enable address sanitizer in rocm's llvm-amdgpu package. (#40570) 
* enable address sanitizer in rocm's llvm-amdgpu package
* remove references to 5.7.0 for now
* fix style error
* address review comments
 2023-10-31 19:09:40 -06:00
Luisa Burini
e5cebb6b6f
fix create/remove env with invalid spack.yaml (#39898) 
* fix create/remove env with invalid spack.yaml
* fix isort error
* fix env ident unittests
* Fix pull request points
 2023-10-31 15:39:42 -07:00
Patrick Bridges
4738b45fb1
beatnik: mall changes for v1.0 (#40726) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-10-31 22:28:48 +01:00
Harmen Stoppels
343ed8a3fa
force color in subshell if not SPACK_COLOR (#40782) 2023-10-31 22:27:00 +01:00
Adam J. Stewart
58e5315089
PyTorch: build with external gloo (#40759) 
* PyTorch: build with external gloo

* Fix gloo compilation with GCC 11

* undeprecate

* py-torch+cuda+gloo requires gloo+cuda
 2023-10-31 16:25:24 -05:00
Samuel Li
26649e71f9
Update sperr (#40626) 
* update SPERR package
* remove blank line
* update SPERR to be version 0.7.1
* a little clean up
* bound versions that require zstd
* add USE_ZSTD
* add libpressio-sperr version upbound
* update libpressio-sperr
* address review comments
* improve format

---------

Co-authored-by: Samuel Li <Sam@Navada>
Co-authored-by: Samuel Li <sam@cisl-m121a>
 2023-10-31 13:53:09 -07:00
Peter Scheibel
2f2d9ae30d
Fix cflags requirements (#40639) 2023-10-31 21:19:12 +01:00
jalcaraz
f9c0a15ba0
TAU: Added dyninst variant (#40790) 
* Added dyninst variant

* Added dyninst variant and fixed some issues

* Update package.py

* Removed whitespace

* Update package.py

* Update package.py

* Fixed conflicting version

---------

Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
 2023-10-31 13:28:16 -06:00
Sreenivasa Murthy Kolam
14cb923dd8
add new recipe for rocm packages- amdsmi (#39270) 
* add new recipe for rocm packages- amdsmilib
* update tags,maintainers list
 2023-10-31 10:18:32 -07:00
Massimiliano Culpo
544a121248
Fix interaction of spec literals that propagate variants with unify:false (#40789) 
* Add tests to ensure variant propagation syntax can round-trip to/from string

* Add a regression test for the bug in 35298

* Reconstruct the spec constraints in the worker process

Specs do not preserve any information on propagation of variants
when round-tripping to/from JSON (which we use to pickle), but
preserve it when round-tripping to/from strings.

Therefore, we pass a spec literal to the worker and reconstruct
the Spec objects there.
 2023-10-31 17:50:13 +01:00
Harmen Stoppels
cd6bb9e159
spack checksum: improve signature (#40800) 2023-10-31 16:52:53 +01:00
Greg Sjaardema
e420a685a9
Seacas: Update for latest seacas releaes version (#40698) 2023-10-31 09:38:20 -06:00
Harmen Stoppels
40a5c1ff2d
spack checksum: fix error when initial filter yields empty list (#40799) 2023-10-31 15:08:41 +01:00
Harmen Stoppels
6933e1c3cb
ci: bump tutorial image and toolchain (#40795) 2023-10-31 12:58:33 +01:00
Harmen Stoppels
160bfd881d
tutorial: replace zlib -> gmake to avoid deprecated versions (#40769) 2023-10-31 10:04:53 +01:00
G-Ragghianti
81997ae6d6
Added NVML and cgroup support to the slurm package (#40638) 
* Added NVML support to the slurm package
* dbus package is required for cgroup support
* Fixing formatting
* Style fix
* Added PAM support
* Added ROCm SMI support
 2023-10-30 19:12:09 -07:00
Todd Gamblin
702a2250fa
docs: update license() docs with examples and links (#40598) 
- [x] Add links to information people are going to want to know when adding license
      information to their packages (namely OSI licenses and SPDX identifiers).
- [x] Update the packaging docs for `license()` with Spack as an example for `when=`.
      After all, it's a dual-licensed package that changed once in the past.
- [x] Add link to https://spdx.org/licenses/ in the `spack create` boilerplate as well.
 2023-10-30 18:54:31 -07:00
Freifrau von Bleifrei
3a0f9ce226
selalib: add (sca)lapack dependency (#40667) 
* selalib: add (sca)lapack dependency
* selalib: change when "-mpi" to "~mpi"
 2023-10-30 18:28:52 -07:00
Thomas Madlener
a095c8113d
dd4hep: Add tag for version 1.27 (#40776) 2023-10-30 17:55:33 -07:00
Larry Knox
4ef433b64d
Add hdf5 version 1.14.3. (#40786) 
Add hdf5 version 1.10.11.
Update version condition for adding h5pfc->h5fc symlink.  File h5pfc
exists in versions 1.10.10 and 1.10.22.
 2023-10-30 17:22:55 -06:00
dependabot[bot]
f228c7cbcc
build(deps): bump black from 23.9.1 to 23.10.1 in /lib/spack/docs (#40680) 
Bumps [black](https://github.com/psf/black) from 23.9.1 to 23.10.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.9.1...23.10.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-10-31 00:11:53 +01:00
MatthewLieber
e9ca16ab07
adding sha for OMB 7.3 release (#40784) 
Co-authored-by: Matt Lieber <lieber.31@osu.edu>
 2023-10-30 16:01:48 -07:00
Andrew W Elble
47ac2b8d09
squashfuse: add version 0.5.0 (#40775) 2023-10-30 11:33:22 -06:00
Harmen Stoppels
b1b8500eba
ci: print colored specs in concretization progress (#40711) 2023-10-30 15:29:27 +01:00
Harmen Stoppels
060a1ff2f3
tty: flush immediately (#40774) 2023-10-30 15:07:30 +01:00
marcost2
9ed9a541c9
freesurfer: fix support for linux (#39864) 
* Load the script file during enviroment setup so that all the enviroment variables are set properly
* Patch csh/tcsh so that it uses spacks via env
* Update SHA for latest version
* Extend shebang to perl and fix up the regex
 2023-10-30 14:19:42 +01:00
Alec Scott
1ebf1c8d1c
must: remove release candidates (#40476) 2023-10-30 14:08:23 +01:00
SXS Bot
c2f3943e9e
spectre: add v2023.10.11 (#40463) 
Co-authored-by: nilsvu <nilsvu@users.noreply.github.com>
 2023-10-30 13:56:05 +01:00