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vcftools: add v0.1.16 (#40805)

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* vcftools: adding new version 0.1.16

* Update var/spack/repos/builtin/packages/vcftools/package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
This commit is contained in:
snehring 2023-11-01 18:33:12 -05:00 committed by GitHub
parent e7456e1aab
commit a8285f0eec
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1 changed files with 10 additions and 1 deletions
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var/spack/repos/builtin/packages/vcftools/package.py
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@ -16,6 +16,7 @@ class Vcftools(AutotoolsPackage):
homepage = "https://vcftools.github.io/"
url = "https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz"
version("0.1.16", sha256="dbfc774383c106b85043daa2c42568816aa6a7b4e6abc965eeea6c47dde914e3")
# this is "a pre-release"
# version('0.1.15', sha256='31e47afd5be679d89ece811a227525925b6907cce4af2c86f10f465e080383e3')
version("0.1.14", sha256="76d799dd9afcb12f1ed42a07bc2886cd1a989858a4d047f24d91dcf40f608582")
@ -26,7 +27,15 @@ class Vcftools(AutotoolsPackage):
# this needs to be in sync with what setup_run_environment adds to
# PERL5LIB below
def configure_args(self):
return ["--with-pmdir={0}".format(self.prefix.lib)]
args = []
# between 0.1.16 and 14 the behavior of the configure script
# wrt the perl lib dir changed and it became relative to the
# install directory, if you specify the whole prefix in
# it now you end up with a nasty recreation of the
# prefix tree in self.prefix.
if self.spec.satisfies("@:0.1.14"):
args.append(f"--with-pmdir={self.prefix.lib}")
return args
@run_before("install")
def filter_sbang(self):