py-metasv: new package at 0.5.4 (#11476)

var/spack/repos/builtin/packages/py-metasv/package.py

@@ -0,0 +1,21 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyMetasv(PythonPackage):
+    """An accurate and integrative structural-variant caller for next
+       generation sequencing"""
+
+    homepage = "http://bioinform.github.io/metasv/"
+    url      = "https://github.com/bioinform/metasv/archive/0.5.4.tar.gz"
+
+    version('0.5.4', sha256='c8613b56f44b9303b9e126618b2aee9dbc0b26c03d14e70e1aeed918582eeec1')
+
+    depends_on('py-pybedtools@0.6.9', type=('build', 'run'))
+    depends_on('py-pysam', type=('build', 'run'))
+    depends_on('py-pyvcf', type=('build', 'run'))
+    depends_on('py-setuptools', type='build')