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New Package:py-ucsf-pyem (#23961)

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* New Package:py-ucsf-pyem

* Dep additions, eun env deletion

* extraction step change

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Desmond Orton 2021-05-28 13:28:14 -06:00 committed by GitHub
parent 3c9c3c678d
commit 9b99f85abf
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var/spack/repos/builtin/packages/py-ucsf-pyem/package.py Normal file
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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyUcsfPyem(PythonPackage):
"""UCSF pyem is a collection of Python modules and command-line
utilities for electron microscopy of biological samples."""
homepage = "https://github.com/asarnow/pyem"
git = "https://github.com/asarnow/pyem.git"
maintainers = ['dorton21']
# Using commit since releases haven't been updated in 2 years
version('2021-04-07', commit='ed0527f98657d21d887357426b74e5240d477fae')
depends_on('py-setuptools', type='build')
depends_on('py-numpy@1.14:', type=('build', 'run'))
depends_on('py-scipy@1.2:', type=('build', 'run'))
depends_on('py-matplotlib@2.2:', type=('build', 'run'))
depends_on('py-future@0.15:', type=('build', 'run'))
depends_on('py-numba@0.41:', type=('build', 'run'))
depends_on('py-seaborn@0.9:', type=('build', 'run'))
depends_on('py-pandas@0.23.4:', type=('build', 'run'))
depends_on('py-pathos@0.2.1:', type=('build', 'run'))
depends_on('py-pyfftw@0.10:', type=('build', 'run'))
depends_on('py-healpy@1.11:', type=('build', 'run'))
depends_on('py-natsort@6.0:', type=('build', 'run'))
# Extracts files into bin for proper useage
@run_after('install')
def extraction(self):
mkdir(self.prefix.bin)
install('*.py', self.prefix.bin)