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r-adsplit: Create new package and update version for its dependencies. (#5640)

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* r-adsplit: Create new package.

* r-rlang: Update version.

* r-s4vectors: Update version.
This commit is contained in:
lingnanyuan 2017-10-09 18:10:29 -05:00 committed by Christoph Junghans
parent a8cd92a2e4
commit 35583f48f4
3 changed files with 47 additions and 0 deletions
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44
var/spack/repos/builtin/packages/r-adsplit/package.py Normal file
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@ -0,0 +1,44 @@
##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RAdsplit(RPackage):
"""This package implements clustering of microarray gene expression
profiles according to functional annotations. For each term genes
are annotated to, splits into two subclasses are computed and a
significance of the supporting gene set is determined."""
homepage = "https://www.bioconductor.org/packages/adSplit/"
url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/adSplit_1.46.0.tar.gz"
version('1.46.0', '7638432c734c1fe458acbb9b29384f57')
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-cluster', type=('build', 'run'))
depends_on('r-go-db', type=('build', 'run'))
depends_on('r-kegg-db', type=('build', 'run'))
depends_on('r-multtest', type=('build', 'run'))

1
var/spack/repos/builtin/packages/r-rlang/package.py
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@ -33,4 +33,5 @@ class RRlang(RPackage):
url = "https://cran.r-project.org/src/contrib/rlang_0.1.2.tar.gz"
list_url = homepage
version('0.1.2', '170f8cf7b61898040643515a1746a53a')
version('0.1.1', '38a51a0b8f8487eb52b4f3d986313682')

2
var/spack/repos/builtin/packages/r-s4vectors/package.py
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@ -37,7 +37,9 @@ class RS4vectors(RPackage):
homepage = "https://bioconductor.org/packages/S4Vectors/"
url = "https://bioconductor.org/packages/3.5/bioc/src/contrib/S4Vectors_0.14.4.tar.gz"
list_url = homepage
version('0.14.6', 'e40ba5de581fc54d70bd5c049415973c')
version('0.14.4', '08ccc46e6d39f3aa9091f868ecec1f70')
depends_on('r-biocgenerics', type=('build', 'run'))