diff --git a/var/spack/repos/builtin/packages/r-adsplit/package.py b/var/spack/repos/builtin/packages/r-adsplit/package.py new file mode 100644 index 0000000000..9419c69bae --- /dev/null +++ b/var/spack/repos/builtin/packages/r-adsplit/package.py @@ -0,0 +1,44 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAdsplit(RPackage): + """This package implements clustering of microarray gene expression + profiles according to functional annotations. For each term genes + are annotated to, splits into two subclasses are computed and a + significance of the supporting gene set is determined.""" + + homepage = "https://www.bioconductor.org/packages/adSplit/" + url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/adSplit_1.46.0.tar.gz" + + version('1.46.0', '7638432c734c1fe458acbb9b29384f57') + + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-cluster', type=('build', 'run')) + depends_on('r-go-db', type=('build', 'run')) + depends_on('r-kegg-db', type=('build', 'run')) + depends_on('r-multtest', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/r-rlang/package.py b/var/spack/repos/builtin/packages/r-rlang/package.py index 995bc11cec..675382e62b 100644 --- a/var/spack/repos/builtin/packages/r-rlang/package.py +++ b/var/spack/repos/builtin/packages/r-rlang/package.py @@ -33,4 +33,5 @@ class RRlang(RPackage): url = "https://cran.r-project.org/src/contrib/rlang_0.1.2.tar.gz" list_url = homepage + version('0.1.2', '170f8cf7b61898040643515a1746a53a') version('0.1.1', '38a51a0b8f8487eb52b4f3d986313682') diff --git a/var/spack/repos/builtin/packages/r-s4vectors/package.py b/var/spack/repos/builtin/packages/r-s4vectors/package.py index 1697895982..dba9d515f2 100644 --- a/var/spack/repos/builtin/packages/r-s4vectors/package.py +++ b/var/spack/repos/builtin/packages/r-s4vectors/package.py @@ -37,7 +37,9 @@ class RS4vectors(RPackage): homepage = "https://bioconductor.org/packages/S4Vectors/" url = "https://bioconductor.org/packages/3.5/bioc/src/contrib/S4Vectors_0.14.4.tar.gz" + list_url = homepage + version('0.14.6', 'e40ba5de581fc54d70bd5c049415973c') version('0.14.4', '08ccc46e6d39f3aa9091f868ecec1f70') depends_on('r-biocgenerics', type=('build', 'run'))