OpenMPI-1.8.7: bug fixes
This commit is contained in:
Hrvoje Jasak
parent
31c440ac56
commit
fbf26c0de3
8 changed files with 283 additions and 18 deletions
10
ThirdParty/AllMake.stage2
vendored
10
ThirdParty/AllMake.stage2
vendored
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@ -97,14 +97,14 @@ then
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-f --define '_configureAdditionalArgs "$WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs"')
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}
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# openmpi 1.8.4
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# openmpi 1.8.7
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#
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[ ! -z "$WM_THIRD_PARTY_USE_OPENMPI_1*$" ] && {
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echo "Building openmpi 1.8.4"
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#( rpm_make -p openmpi-1.8.4 -s openmpi-1.8.4.spec -u http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.4.tar.gz \
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# -f --define '_configureAdditionalArgs "$WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs"')
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( rpm_make -p openmpi-1.8.4 -s openmpi-1.8.4.spec -u http://downloads.sourceforge.net/project/openfoam-extend/foam-extend-3.1/ThirdParty/openmpi-1.8.4.tar.gz \
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echo "Building openmpi 1.8.7"
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( rpm_make -p openmpi-1.8.7 -s openmpi-1.8.7.spec -u http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.7.tar.gz \
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-f --define '_configureAdditionalArgs "$WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs"')
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#( rpm_make -p openmpi-1.8.6 -s openmpi-1.8.6.spec -u http://downloads.sourceforge.net/project/openfoam-extend/foam-extend-3.1/ThirdParty/openmpi-1.8.6.tar.gz \
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# -f --define '_configureAdditionalArgs "$WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs"')
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}
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else
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echo "Using system installed OpenMPI"
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265
ThirdParty/rpmBuild/SPECS/openmpi-1.8.7.spec
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265
ThirdParty/rpmBuild/SPECS/openmpi-1.8.7.spec
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@ -0,0 +1,265 @@
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#------------------------------------------------------------------------------
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# ========= |
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# \\ / F ield | foam-extend: Open Source CFD
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# \\ / O peration |
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# \\ / A nd | For copyright notice see file Copyright
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# \\/ M anipulation |
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#------------------------------------------------------------------------------
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# License
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# This file is part of foam-extend.
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#
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# foam-extend is free software: you can redistribute it and/or modify it
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# under the terms of the GNU General Public License as published by the
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# Free Software Foundation, either version 3 of the License, or (at your
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# option) any later version.
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#
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# foam-extend is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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# General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
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#
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# Script
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# RPM spec file for openmpi-1.8.7
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#
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# Description
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# RPM spec file for creating a relocatable RPM
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#
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# Author:
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# Martin Beaudoin, Hydro-Quebec, (2015)
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#
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#------------------------------------------------------------------------------
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# We grab the value of WM_THIRD_PARTY and WM_OPTIONS from the environment variable
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%{expand:%%define _WM_THIRD_PARTY_DIR %(echo $WM_THIRD_PARTY_DIR)}
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%{expand:%%define _WM_OPTIONS %(echo $WM_OPTIONS)}
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# Disable the generation of debuginfo packages
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%define debug_package %{nil}
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# The topdir needs to point to the $WM_THIRD_PARTY/rpmbuild directory
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%define _topdir %{_WM_THIRD_PARTY_DIR}/rpmBuild
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%define _tmppath %{_topdir}/tmp
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# Will install the package directly $WM_THIRD_PARTY_DIR
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# Some comments about package relocation:
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# By using this prefix for the Prefix: parameter in this file, you will make this
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# package relocatable.
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#
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# This is fine, as long as your software is itself relocatable.
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#
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# Simply take note that libraries built with libtool are not relocatable because the
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# prefix we specify will be hard-coded in the library .la files.
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# Ref: http://sourceware.org/autobook/autobook/autobook_80.html
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#
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# In that case, if you ever change the value of the $WM_THIRD_PARTY_DIR, you will
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# not be able to reutilize this RPM, even though it is relocatable. You will need to
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# regenerate the RPM.
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#
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%define _prefix %{_WM_THIRD_PARTY_DIR}
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%define name openmpi
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%define release %{_WM_OPTIONS}
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%define version 1.8.7
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%define buildroot %{_topdir}/BUILD/%{name}-%{version}-root
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BuildRoot: %{buildroot}
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Summary: openmpi
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License: Unkown
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Name: %{name}
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Version: %{version}
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Release: %{release}
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URL: http://www.open-mpi.org/software/ompi/v1.8/downloads
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Source: %url/%{name}-%{version}.tar.gz
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Prefix: %{_prefix}
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Group: Development/Tools
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%define _installPrefix %{_prefix}/packages/%{name}-%{version}/platforms/%{_WM_OPTIONS}
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#--------------------------------------------------------------------------
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#
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# Here, we define default compiling options for openmpi
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#
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# One can override the option on the commande line : --define='MACRO EXPR'
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#
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%{!?_configureAdditionalArgs: %define _configureAdditionalArgs Undefined}
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%description
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%{summary}
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%prep
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%setup -q
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%build
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# export WM settings in a form that GNU configure recognizes
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[ -n "$WM_CC" ] && export CC="$WM_CC"
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[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
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[ -n "$WM_CFLAGS" ] && export CFLAGS="$WM_CFLAGS"
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[ -n "$WM_CXXFLAGS" ] && export CXXFLAGS="$WM_CXXFLAGS"
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[ -n "$WM_LDFLAGS" ] && export LDFLAGS="$WM_LDFLAGS"
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set +x
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echo ""
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echo "Compilation options:"
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echo " _configureAdditionalArgs : %{_configureAdditionalArgs}"
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echo ""
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set -x
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unset mpiWith
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# Enable GridEngine if it appears to be in use
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# If you don't want any integration with SGE, simply unset the SGE
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# environment variable
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if [ -n "$SGE_ROOT" ]
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then
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mpiWith="$mpiWith --with-sge"
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else
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mpiWith="$mpiWith --without-sge"
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mpiWith="$mpiWith --enable-mca-no-build=ras-gridengine,pls-gridengine"
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fi
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# Infiniband support
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# Adjust according to your local paths
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# if [ -d /usr/local/ofed -a -d /usr/local/ofed/lib64 ]
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# then
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# mpiWith="$mpiWith --with-openib=/usr/local/ofed"
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# mpiWith="$mpiWith --with-openib-libdir=/usr/local/ofed/lib64"
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# fi
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./configure \
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--prefix=%{_installPrefix} \
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--exec_prefix=%{_installPrefix} \
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--enable-mpirun-prefix-by-default \
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--enable-orterun-prefix-by-default \
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--enable-shared \
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--enable-mpi-cxx \
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--disable-static \
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--disable-mpi-f77 \
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--disable-mpi-f90 \
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--without-slurm \
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--enable-mpi-profile $mpiWith \
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--disable-vt \
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`echo %{?_configureAdditionalArgs}`
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[ -z "$WM_NCOMPPROCS" ] && WM_NCOMPPROCS=1
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make -j $WM_NCOMPPROCS
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%install
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make install DESTDIR=$RPM_BUILD_ROOT
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# Creation of foam-extend specific .csh and .sh files"
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echo ""
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echo "Generating foam-extend specific .csh and .sh files for the package %{name}-%{version}"
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echo ""
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#
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# Generate package specific .sh file for foam-extend
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#
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mkdir -p $RPM_BUILD_ROOT/%{_installPrefix}/etc
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cat << DOT_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.sh
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# Load %{name}-%{version} libraries and binaries
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# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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export OPENMPI_DIR=\$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/\$WM_OPTIONS
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export OPENMPI_BIN_DIR=\$OPENMPI_DIR/bin
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export OPENMPI_LIB_DIR=\$OPENMPI_DIR/lib
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# Enable access to the package runtime applications and libraries
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[ -d \$OPENMPI_BIN_DIR ] && _foamAddPath \$OPENMPI_BIN_DIR
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[ -d \$OPENMPI_LIB_DIR ] && _foamAddLib \$OPENMPI_LIB_DIR
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export MPI_HOME=\$OPENMPI_DIR
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export MPI_ARCH_PATH=\$MPI_HOME
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export OPAL_PREFIX=\$MPI_ARCH_PATH
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# We initialize the rest of the environment using mpicc --showme:
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export OPENMPI_INCLUDE_DIR="\`mpicc --showme:incdirs\`"
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export OPENMPI_COMPILE_FLAGS="\`mpicc --showme:compile\`"
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export OPENMPI_LINK_FLAGS="\`mpicc --showme:link\`"
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# Set the foam-extend compilation flags
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export PINC=\$OPENMPI_COMPILE_FLAGS
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export PLIBS=\$OPENMPI_LINK_FLAGS
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if [ "\$FOAM_VERBOSE" -a "\$PS1" ]
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then
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echo " Environment variables defined for OpenMPI:"
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echo " OPENMPI_BIN_DIR : \$OPENMPI_BIN_DIR"
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echo " OPENMPI_LIB_DIR : \$OPENMPI_LIB_DIR"
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echo " OPENMPI_INCLUDE_DIR : \$OPENMPI_INCLUDE_DIR"
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echo " OPENMPI_COMPILE_FLAGS : \$OPENMPI_COMPILE_FLAGS"
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echo " OPENMPI_LINK_FLAGS : \$OPENMPI_LINK_FLAGS"
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echo ""
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echo " MPI_HOME : \$MPI_HOME"
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echo " MPI_ARCH_PATH : \$MPI_ARCH_PATH"
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echo " OPAL_PREFIX : \$OPAL_PREFIX"
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echo " PINC : \$PINC"
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echo " PLIBS : \$PLIBS"
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fi
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DOT_SH_EOF
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#
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# Generate package specific .csh file for foam-extend
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#
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cat << DOT_CSH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.csh
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# Load %{name}-%{version} libraries and binaries
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# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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setenv OPENMPI_DIR \$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/\$WM_OPTIONS
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setenv OPENMPI_BIN_DIR \$OPENMPI_DIR/bin
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setenv OPENMPI_LIB_DIR \$OPENMPI_DIR/lib
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# Enable access to the package runtime applications and libraries
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if ( -e \$OPENMPI_BIN_DIR ) then
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_foamAddPath \$OPENMPI_BIN_DIR
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endif
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if ( -e \$OPENMPI_LIB_DIR ) then
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_foamAddLib \$OPENMPI_LIB_DIR
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endif
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setenv MPI_HOME \$OPENMPI_DIR
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setenv MPI_ARCH_PATH \$MPI_HOME
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setenv OPAL_PREFIX \$MPI_ARCH_PATH
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# We initialize the rest of the environment using mpicc --showme:
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setenv OPENMPI_INCLUDE_DIR "\`mpicc --showme:incdirs\`"
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setenv OPENMPI_COMPILE_FLAGS "\`mpicc --showme:compile\`"
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setenv OPENMPI_LINK_FLAGS "\`mpicc --showme:link\`"
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# Set the foam-extend compilation flags
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setenv PINC "\$OPENMPI_COMPILE_FLAGS"
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setenv PLIBS "\$OPENMPI_LINK_FLAGS"
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if (\$?FOAM_VERBOSE && \$?prompt) then
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echo " Environment variables defined for OpenMPI:"
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echo " OPENMPI_BIN_DIR : \$OPENMPI_BIN_DIR"
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echo " OPENMPI_LIB_DIR : \$OPENMPI_LIB_DIR"
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echo " OPENMPI_INCLUDE_DIR : \$OPENMPI_INCLUDE_DIR"
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echo " OPENMPI_COMPILE_FLAGS : \$OPENMPI_COMPILE_FLAGS"
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echo " OPENMPI_LINK_FLAGS : \$OPENMPI_LINK_FLAGS"
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echo ""
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echo " MPI_HOME : \$MPI_HOME"
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echo " MPI_ARCH_PATH : \$MPI_ARCH_PATH"
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echo " OPAL_PREFIX : \$OPAL_PREFIX"
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echo " PINC : \$PINC"
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echo " PLIBS : \$PLIBS"
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endif
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DOT_CSH_EOF
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#finally, generate a .tgz file for systems where using rpm for installing packages
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# as a non-root user might be a problem.
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(mkdir -p %{_topdir}/TGZS/%{_target_cpu}; cd $RPM_BUILD_ROOT/%{_prefix}; tar -zcvf %{_topdir}/TGZS/%{_target_cpu}/%{name}-%{version}.tgz packages/%{name}-%{version})
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%clean
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rm -rf %{buildroot}
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%files
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%defattr(-,root,root)
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%{_installPrefix}
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@ -89,7 +89,7 @@ export WM_THIRD_PARTY_USE_CMAKE_322=1
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#
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# For AllMake.stage2
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export WM_THIRD_PARTY_USE_OPENMPI_184=1
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export WM_THIRD_PARTY_USE_OPENMPI_187=1
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#
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# For AllMake.stage3
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@ -81,7 +81,7 @@ setenv WM_THIRD_PARTY_USE_CMAKE_322 1
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#
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# For AllMake.stage2
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setenv WM_THIRD_PARTY_USE_OPENMPI_184 1
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setenv WM_THIRD_PARTY_USE_OPENMPI_187 1
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#
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# For AllMake.stage3
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@ -153,7 +153,7 @@ if ( ! $?WM_PRECISION_OPTION ) setenv WM_PRECISION_OPTION DP
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# WM_COMPILE_OPTION = Opt | Debug | Prof
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if ( ! $?WM_COMPILE_OPTION ) setenv WM_COMPILE_OPTION Opt
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#setenv WM_COMPILE_OPTION Opt
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setenv WM_COMPILE_OPTION Opt
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#setenv WM_COMPILE_OPTION Debug
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# WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI | GAMMA | MPI | QSMPI | MVAPICH2
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@ -195,8 +195,8 @@ setenv WM_THIRD_PARTY_USE_CMAKE_322 1
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#
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# For AllMake.stage2
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setenv WM_THIRD_PARTY_USE_OPENMPI_184 1
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#setenv WM_THIRD_PARTY_USE_OPENMPI_184_ConfigureAdditionalArgs '--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
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setenv WM_THIRD_PARTY_USE_OPENMPI_187 1
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setenv WM_THIRD_PARTY_USE_OPENMPI_187_ConfigureAdditionalArgs '--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
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#setenv WM_THIRD_PARTY_USE_OPENMPI_165 1
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#setenv WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs '--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
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#setenv WM_THIRD_PARTY_USE_OPENMPI_15 1
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@ -205,8 +205,8 @@ export WM_THIRD_PARTY_USE_CMAKE_322=1
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#
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# For AllMake.stage2
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export WM_THIRD_PARTY_USE_OPENMPI_184=1
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export WM_THIRD_PARTY_USE_OPENMPI_184_ConfigureAdditionalArgs='--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
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export WM_THIRD_PARTY_USE_OPENMPI_187=1
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export WM_THIRD_PARTY_USE_OPENMPI_187_ConfigureAdditionalArgs='--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
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#export WM_THIRD_PARTY_USE_OPENMPI_165=1
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#export WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs='--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
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#export WM_THIRD_PARTY_USE_OPENMPI_15=1
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@ -161,11 +161,11 @@ set mpi_version=unknown
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switch ("$WM_MPLIB")
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case OPENMPI:
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if ($?WM_THIRD_PARTY_USE_OPENMPI_184 != 0 && -d $WM_THIRD_PARTY_DIR/packages/openmpi-1.8.4/platforms/$WM_OPTIONS ) then
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set mpi_version=openmpi-1.8.4
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if ($?WM_THIRD_PARTY_USE_OPENMPI_187 != 0 && -d $WM_THIRD_PARTY_DIR/packages/openmpi-1.8.7/platforms/$WM_OPTIONS ) then
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set mpi_version=openmpi-1.8.7
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if ($?FOAM_VERBOSE && $?prompt) then
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echo "Using openmpi-1.8.4 from the ThirdParty package: $WM_THIRD_PARTY_DIR/packages/$mpi_version"
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echo "Using openmpi-1.8.7 from the ThirdParty package: $WM_THIRD_PARTY_DIR/packages/$mpi_version"
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endif
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_foamSource $WM_THIRD_PARTY_DIR/packages/$mpi_version/platforms/$WM_OPTIONS/etc/$mpi_version.csh
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@ -213,12 +213,12 @@ unset MPI_ARCH_PATH
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mpi_version=unknown
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case "$WM_MPLIB" in
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OPENMPI)
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if [ ! -z $WM_THIRD_PARTY_USE_OPENMPI_184 ] && [ -e $WM_THIRD_PARTY_DIR/packages/openmpi-1.8.4/platforms/$WM_OPTIONS ]
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if [ ! -z $WM_THIRD_PARTY_USE_OPENMPI_187 ] && [ -e $WM_THIRD_PARTY_DIR/packages/openmpi-1.8.7/platforms/$WM_OPTIONS ]
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then
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mpi_version=openmpi-1.8.4
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mpi_version=openmpi-1.8.7
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if [ "$FOAM_VERBOSE" -a "$PS1" ]
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then
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echo "Using openmpi-1.8.4 from the ThirdParty package: $WM_THIRD_PARTY_DIR/packages/$mpi_version"
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echo "Using openmpi-1.8.7 from the ThirdParty package: $WM_THIRD_PARTY_DIR/packages/$mpi_version"
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fi
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_foamSource $WM_THIRD_PARTY_DIR/packages/$mpi_version/platforms/$WM_OPTIONS/etc/$mpi_version.sh
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Reference in a new issue