hawk-utils-scripts/monitoring/db/scripts/get_detailed_power.py

#!/usr/bin/env python3

import argparse
import numpy as np
from collections import OrderedDict
import os.path


def parse_arguments(args):
	parser = argparse.ArgumentParser(
				description='Produce detailed power usage data for a list of jobids.')
	parser.add_argument('-v', '--verbose', action='store_true',
				help='Show database querries, etc.')
	parser.add_argument('-t', '--interval', action='store', type=float, default=5.0,
				help="Interval between power values in seconds")
	parser.add_argument('--hawk-ai', action='store_true',
				help="Job did run on Hawk-AI")
	parser.add_argument('jobid', type=parse_jobid,
			nargs='+', 
			help='Job ID such as "2260215" or "2260215.hawk-pbs5"')
    
	return parser.parse_args(args)

def parse_jobid(s):
	import re
	hawkpbs = r'.hawk-pbs5'
	jobid = re.sub(hawkpbs, '', s)
	not_allowed = r'[^0-9\[\]]' # Jobid can be more complex than just digits, eg 2444420[201]
	if re.search(not_allowed, jobid): 
		raise argparse.ArgumentTypeError(f'invalid job ID "{s}"')
	return jobid


class Power:
	def __init__(self, nodes):
		self.nodes = nodes
		self.epochs = OrderedDict()
		self.first_ts = None
		self.last_ts = None
		self.warnings = ""

	@classmethod
	def from_list(cls, data):
		"""
		Returns a Power instance from a list of tuples (timestamp, node, value).

		Assumptions:
		 - data is sorted by timestamp ascending
		 - for each timestamp, there is the same set of nodes and in the same order
		"""

		idx_ts = 0; idx_node = 1; idx_value = 2
		nodes = list(OrderedDict.fromkeys([line[idx_node] for line in data]))   # preserves order of nodes
		power = Power(nodes)

		values = {}
		for l in data:
			ts = l[idx_ts]
			if ts not in values:
				values[ts] = []
			value = l[idx_value]
			values[ts].append(value)

		epochs = values.keys()
		for epoch in epochs:
			power.insert_epoch(epoch, values[epoch])

		# check implicit assumptions: 1) ts/epochs are sorted
		e = list(epochs)
		k = list(values.keys())
		if not e == k:
			power.warnings += "# Warning: Unexpected unsorted timestamps.\n"

		# check implicit assumptions: 2) each line has #nodes values
		nnodes = len(nodes)
		for epoch in epochs:
			actual = len(values[epoch])
			if actual != nnodes:
				power.warnings += "# Warning: Unexpected number of nodes ({actual}/{expected})\n".format(actual=actual, expected=nnodes)
				break
		
		return power

	@classmethod
	def from_db(cls, db, jobid, interval, hawk_ai):
		all_list = db.db_to_list(jobid, interval, hawk_ai)
		if not all_list:
			raise RuntimeError

		power = cls.from_list(all_list)

		return power 
 
	def to_file(self, jobid, header=""):
		"""Dumps power data to file. Returns filename is succesfull and None if unsucessfull."""
		fname = self.filename(jobid)
		if os.path.exists(fname):
			print("Error: cowardly refusing to overwrite file ", fname)
			return None

		header += self.warnings
		try:
			with open(fname, "w+") as f:
				f.write(header + self.header())
				f.write(self.body())
		except IOError:
			print("Error: could not write to file ", fname)
			fname = None

		return fname
	
	def insert_epoch(self, ts, values):
		self.epochs[ts] = values
		if not self.first_ts:
			self.first_ts = ts
		self.last_ts = ts

	def header(self):
		hd  = "# all timestamp have unit miliseconds since unix epoch\n"
		hd += "# all power values have unit Watt\n"
		hd += "timestamp,RESERVED,head_node_power,avg_node_power,median_node_power,min_node_power,max_node_power,std_dev_node_power"
		# add node names here instead
		hd += "," + ",".join(self.nodes)
		hd += "\n"
		return hd

	def body(self):
		_body = ""
		for epoch in self.epochs.items():
			_body += self.pretty_print(self.summarize_epoch(epoch))
		return _body
	
	def summarize_time(self, ts):
		return ts, ""

	@staticmethod
	def summarize_values(val):
		values = np.asarray(val)
		head = values[0]
		min, max = values.min(), values.max()
		avg, stddev = values.mean(), values.std()
		median = np.median(values)
		return head, avg, median, min, max, stddev

	def summarize_epoch(self, epoch):
		ts, values = epoch
		return self.summarize_time(ts) \
				+ self.summarize_values(values) \
				+ tuple(values)
	
	@staticmethod
	def pretty_print(args):
		return ",".join(str(a) for a in args) + '\n'

	def filename(self, jobid):
		fname = "detailed_power_{jobid}.hawk-pbs5.{first}-{last}.csv".format(
			jobid=jobid, first=self.first_ts, last=self.last_ts
		)
		return fname
	

class MonitoringDB:
	QUERY_STRING_HAWK = """
-- For description of get_job_data(), see https://kb.hlrs.de/monitoring/index.php/TimescaleDB_-_Query_Guidelines#Function:_get_job_data_and_get_ai_job_data
select * from get_job_data(
		'{jobid}.hawk-pbs5',
		'cmc_power_racktraynodepoweravg',   -- power data source
		'{interval} seconds', 
		array['avg'],          -- aggregation: average across samples in bucket
		array['time','node']   -- sort by time first than node (ascending)
)
as t(time bigint, name varchar, avg double precision);
"""

	QUERY_STRING_HAWK_AI = """
-- For description of get_ai_job_data(), see https://kb.hlrs.de/monitoring/index.php/TimescaleDB_-_Query_Guidelines#Function:_get_job_data_and_get_ai_job_data
select * from get_ai_job_data(
		'{jobid}.hawk-pbs5',
		'telegraf_ipmi_power_meter',   -- power data source
		'{interval} seconds', 
		array['avg'],          -- aggregation: average across samples in bucket
		array['time','node']   -- sort by time first than node (ascending)
)
as t(time bigint, name varchar, avg double precision);
"""

	def __init__(self, verbose):
		self.connection = self.init_db(verbose)

	@staticmethod
	def init_db(verbose):
		import sqlalchemy as db
		engine = db.create_engine('postgresql://hpc@hawk-monitor4:5432/coe_mon', echo=verbose)
		connection = engine.connect()
		return connection

	def close_db(self):
		return self.connection.close()

	@classmethod
	def build_query(cls, jobid, interval, hawk_ai):
		import sqlalchemy as db
		if hawk_ai:
			query_string = cls.QUERY_STRING_HAWK_AI
		else:
			query_string = cls.QUERY_STRING_HAWK
		return db.text(query_string.format(jobid=jobid, interval=interval))

	def db_to_list(self, jobid, interval, hawk_ai):
		query = self.build_query(jobid, interval, hawk_ai)
		return self.connection.execute(query).fetchall()

	def db_to_pf(self, jobid, interval, hawk_ai):
		import pandas as pd
		query = self.build_query(jobid, interval, hawk_ai)
		return pd.read_sql(query, con=self.connection)


class App:
	def __init__(self, config):
		self.config = config
		self.db = MonitoringDB(self.config.verbose)

	@staticmethod
	def warnings(config):
		warn = ""
		if not config.hawk_ai and config.interval < 5: 
			warn += '# Warning: interval<5 is very small and may lead to data gaps.'
		if config.hawk_ai and config.interval < 60:
			warn += '# Warning: interval<60 is very small for Hawk-AI nodes and may lead to data gaps.'
		return warn
	
	def run_all(self):
		warnings = self.warnings(self.config)
		if warnings:
			print(warnings)

		header = f"# {config.datetime}: {config.cmd}\n"
		if warnings:
			header +=  f"{warnings}\n"
		header += "#\n"

		for jobid in self.config.jobid:
			try:
				power = Power.from_db(self.db, jobid, self.config.interval, self.config.hawk_ai)
			except RuntimeError:
				print('No data found for job ID "{}"'.format(jobid))
				continue

			fn = power.to_file(jobid, header)
			if fn:
				print('Created file {fn}'.format(fn=fn))
			if power.warnings:
				print(power.warnings)


if __name__ == "__main__":
	import sys
	from datetime import datetime
	config = parse_arguments(sys.argv[1:])
	config.cmd = " ".join(sys.argv)
	config.datetime = f"{datetime.now()}"

	main = App(config)
	main.run_all()