From d42f0c8b888a3b5e066b7d2dedf13dc721fb143b Mon Sep 17 00:00:00 2001 From: Christoph Niethammer Date: Fri, 9 Sep 2016 12:51:53 +0000 Subject: [PATCH] Deleted Open MPI sit class files except the latest in a release series. --- packages/mpi/openmpi/openmpi-1.10.0 | 49 ---- packages/mpi/openmpi/openmpi-1.10.1 | 49 ---- packages/mpi/openmpi/openmpi-1.10.2 | 49 ---- packages/mpi/openmpi/openmpi-1.10.3 | 49 ---- packages/mpi/openmpi/openmpi-2.0.0 | 53 ----- packages/mpi/openmpi/openmpi-2.0.0-0001.patch | 218 ------------------ packages/mpi/openmpi/openmpi-trunk | 39 ---- 7 files changed, 506 deletions(-) delete mode 100755 packages/mpi/openmpi/openmpi-1.10.0 delete mode 100755 packages/mpi/openmpi/openmpi-1.10.1 delete mode 100755 packages/mpi/openmpi/openmpi-1.10.2 delete mode 100755 packages/mpi/openmpi/openmpi-1.10.3 delete mode 100755 packages/mpi/openmpi/openmpi-2.0.0 delete mode 100644 packages/mpi/openmpi/openmpi-2.0.0-0001.patch delete mode 100755 packages/mpi/openmpi/openmpi-trunk diff --git a/packages/mpi/openmpi/openmpi-1.10.0 b/packages/mpi/openmpi/openmpi-1.10.0 deleted file mode 100755 index 25926e3..0000000 --- a/packages/mpi/openmpi/openmpi-1.10.0 +++ /dev/null @@ -1,49 +0,0 @@ -#!/bin/sh -# sit class file -# -# Christoph Niethammer (C) 2015 -# - -CATEGORY="mpi" -PACKAGE="openmpi" -VERSION="1.10.0" -URL="http://www.open-mpi.org" -INSTALLER="Christoph Niethammer " - -# Archive A and package name P -A=${PACKAGE}-${VERSION}.tar.bz2 -P=${PACKAGE}-${VERSION} -HASH_MD5=10e097bfaca8ed625781af0314797b90 -HASH_SHA1=47e1b9acfd87fedea6cfdeea4c2c7f6db1ddf397 - -enable_cuda=1 - -# Other interesting configure options: -# --enable-mpi-threads -# --enable-progress-threads -CONFIGURE_OPTS=" - --with-devel-headers \ - --enable-contrib-no-build=vt - --enable-shared \ - --enable-static \ - --enable-mpi-fortran=usempif08 \ - " - -if [ $PLATFORM = "hornet" ] ; then - CONFIGURE_OPTS="$CONFIGURE_OPTS --with-platform=lanl/cray_xe6/optimized-nopanasas" -fi - -if [ $enable_cuda != 0 ] ; then - module load cuda - CONFIGURE_OPTS+=" --with-cuda=$CUDA_DIR" -fi - -if [[ -d /opt/voltaire/fca ]]; then - echo "Voltaire FCA found" - sit_info "Enabling Voltaire FCA (/opt/voltaire/fca)" - CONFIGURE_OPTS+=" --with-fca=/opt/voltaire/fca" -fi - -src_pretest() { - make check -} diff --git a/packages/mpi/openmpi/openmpi-1.10.1 b/packages/mpi/openmpi/openmpi-1.10.1 deleted file mode 100755 index d8b4322..0000000 --- a/packages/mpi/openmpi/openmpi-1.10.1 +++ /dev/null @@ -1,49 +0,0 @@ -#!/bin/sh -# sit class file -# -# Christoph Niethammer (C) 2015 -# - -CATEGORY="mpi" -PACKAGE="openmpi" -VERSION="1.10.1" -URL="http://www.open-mpi.org" -INSTALLER="Christoph Niethammer " - -# Archive A and package name P -A=${PACKAGE}-${VERSION}.tar.bz2 -P=${PACKAGE}-${VERSION} -HASH_MD5=10e097bfaca8ed625781af0314797b90 -HASH_SHA1=47e1b9acfd87fedea6cfdeea4c2c7f6db1ddf397 - -enable_cuda=1 - -# Other interesting configure options: -# --enable-mpi-threads -# --enable-progress-threads -CONFIGURE_OPTS=" - --with-devel-headers \ - --enable-contrib-no-build=vt - --enable-shared \ - --enable-static \ - --enable-mpi-fortran=usempif08 \ - " - -if [ $PLATFORM = "hornet" ] ; then - CONFIGURE_OPTS="$CONFIGURE_OPTS --with-platform=lanl/cray_xe6/optimized-nopanasas" -fi - -if [ $enable_cuda != 0 ] ; then - module load cuda - CONFIGURE_OPTS+=" --with-cuda=$CUDA_DIR" -fi - -if [[ -d /opt/voltaire/fca ]]; then - echo "Voltaire FCA found" - sit_info "Enabling Voltaire FCA (/opt/voltaire/fca)" - CONFIGURE_OPTS+=" --with-fca=/opt/voltaire/fca" -fi - -src_pretest() { - make check -} diff --git a/packages/mpi/openmpi/openmpi-1.10.2 b/packages/mpi/openmpi/openmpi-1.10.2 deleted file mode 100755 index a82d996..0000000 --- a/packages/mpi/openmpi/openmpi-1.10.2 +++ /dev/null @@ -1,49 +0,0 @@ -#!/bin/sh -# sit class file -# -# Christoph Niethammer (C) 2015 -# - -CATEGORY="mpi" -PACKAGE="openmpi" -VERSION="1.10.2" -URL="http://www.open-mpi.org" -INSTALLER="Christoph Niethammer " - -# Archive A and package name P -A=${PACKAGE}-${VERSION}.tar.bz2 -P=${PACKAGE}-${VERSION} -HASH_MD5=b2f43d9635d2d52826e5ef9feb97fd4c -HASH_SHA1=03934fc0a2dd0d0d2d0459d714a976eabca938fb - -enable_cuda=1 - -# Other interesting configure options: -# --enable-mpi-threads -# --enable-progress-threads -CONFIGURE_OPTS=" - --with-devel-headers \ - --enable-contrib-no-build=vt - --enable-shared \ - --enable-static \ - --enable-mpi-fortran=usempif08 \ - " - -if [ $PLATFORM = "hornet" ] ; then - CONFIGURE_OPTS="$CONFIGURE_OPTS --with-platform=lanl/cray_xe6/optimized-nopanasas" -fi - -if [ $enable_cuda != 0 ] ; then - module load cuda - CONFIGURE_OPTS+=" --with-cuda=$CUDA_DIR" -fi - -if [[ -d /opt/voltaire/fca ]]; then - echo "Voltaire FCA found" - sit_info "Enabling Voltaire FCA (/opt/voltaire/fca)" - CONFIGURE_OPTS+=" --with-fca=/opt/voltaire/fca" -fi - -src_pretest() { - make check -} diff --git a/packages/mpi/openmpi/openmpi-1.10.3 b/packages/mpi/openmpi/openmpi-1.10.3 deleted file mode 100755 index bab0bae..0000000 --- a/packages/mpi/openmpi/openmpi-1.10.3 +++ /dev/null @@ -1,49 +0,0 @@ -#!/bin/sh -# sit class file -# -# Christoph Niethammer (C) 2016 -# - -CATEGORY="mpi" -PACKAGE="openmpi" -VERSION="1.10.3" -URL="http://www.open-mpi.org" -INSTALLER="Christoph Niethammer " - -# Archive A and package name P -A=${PACKAGE}-${VERSION}.tar.bz2 -P=${PACKAGE}-${VERSION} -HASH_MD5=b2f43d9635d2d52826e5ef9feb97fd4c -HASH_SHA1=03934fc0a2dd0d0d2d0459d714a976eabca938fb - -enable_cuda=1 - -# Other interesting configure options: -# --enable-mpi-threads -# --enable-progress-threads -CONFIGURE_OPTS=" - --with-devel-headers \ - --enable-contrib-no-build=vt - --enable-shared \ - --enable-static \ - --enable-mpi-fortran=usempif08 \ - " - -if [ $PLATFORM = "hornet" ] ; then - CONFIGURE_OPTS="$CONFIGURE_OPTS --with-platform=lanl/cray_xe6/optimized-nopanasas" -fi - -if [ $enable_cuda != 0 ] ; then - module load cuda - CONFIGURE_OPTS+=" --with-cuda=$CUDA_DIR" -fi - -if [[ -d /opt/voltaire/fca ]]; then - echo "Voltaire FCA found" - sit_info "Enabling Voltaire FCA (/opt/voltaire/fca)" - CONFIGURE_OPTS+=" --with-fca=/opt/voltaire/fca" -fi - -src_pretest() { - make check -} diff --git a/packages/mpi/openmpi/openmpi-2.0.0 b/packages/mpi/openmpi/openmpi-2.0.0 deleted file mode 100755 index 39ef618..0000000 --- a/packages/mpi/openmpi/openmpi-2.0.0 +++ /dev/null @@ -1,53 +0,0 @@ -#!/bin/sh -# sit class file -# -# Christoph Niethammer (C) 2016 -# - -CATEGORY="mpi" -PACKAGE="openmpi" -VERSION="2.0.0" -URL="http://www.open-mpi.org" -INSTALLER="Christoph Niethammer " - -# Archive A and package name P -A=${PACKAGE}-${VERSION}.tar.bz2 -P=${PACKAGE}-${VERSION} -HASH_MD5=cdacc800cb4ce690c1f1273cb6366674 -HASH_SHA1=a34f07a0e94af4ccd8080d74827befd61824c6c3 - -enable_cuda=0 - -# Other interesting configure options: -# --enable-mpi-threads -# --enable-progress-threads -CONFIGURE_OPTS=" - --with-devel-headers \ - --enable-contrib-no-build=vt - --enable-shared \ - --enable-static \ - --enable-mpi-fortran=usempif08 \ - " - -if [ $PLATFORM = "hornet" ] ; then - CONFIGURE_OPTS="$CONFIGURE_OPTS --with-platform=lanl/cray_xe6/optimized-nopanasas" -fi - -if [ $enable_cuda != 0 ] ; then - module load cuda - CONFIGURE_OPTS+=" --with-cuda=$CUDA_DIR" -fi - -if [[ -d /opt/voltaire/fca ]]; then - echo "Voltaire FCA found" - sit_info "Enabling Voltaire FCA (/opt/voltaire/fca)" - CONFIGURE_OPTS+=" --with-fca=/opt/voltaire/fca" -fi - -src_prepare() { - patch -p1 < $SCLASS_DIR/$sit_classfile-0001.patch -} - -src_pretest() { - make check -} diff --git a/packages/mpi/openmpi/openmpi-2.0.0-0001.patch b/packages/mpi/openmpi/openmpi-2.0.0-0001.patch deleted file mode 100644 index 6bf2d95..0000000 --- a/packages/mpi/openmpi/openmpi-2.0.0-0001.patch +++ /dev/null @@ -1,218 +0,0 @@ -From 4079eec9749e47dddc6acc9c0847b3091601919f Mon Sep 17 00:00:00 2001 -From: Nathan Hjelm -Date: Mon, 8 Aug 2016 11:33:45 -0600 -Subject: [PATCH] pml/ob1: be more selective when using rdma capable btls - -This commit updates the btl selection logic for the RDMA and RDMA -pipeline protocols to use a btl iff: 1) the btl is also used for eager -messages (high exclusivity), or 2) no other RDMA btl is available on -an endpoint and the pml_ob1_use_all_rdma MCA variable is true. This -fixes a performance regression with shared memory when an RDMA capable -network is available. - -Signed-off-by: Nathan Hjelm ---- - ompi/mca/pml/ob1/pml_ob1.h | 3 +- - ompi/mca/pml/ob1/pml_ob1_component.c | 6 +++ - ompi/mca/pml/ob1/pml_ob1_rdma.c | 79 ++++++++++++++++++++++++++++++++---- - ompi/mca/pml/ob1/pml_ob1_rdma.h | 6 +++ - ompi/mca/pml/ob1/pml_ob1_recvreq.c | 2 +- - 5 files changed, 85 insertions(+), 11 deletions(-) - -diff --git a/ompi/mca/pml/ob1/pml_ob1.h b/ompi/mca/pml/ob1/pml_ob1.h -index 1f78c51..8f0f510 100644 ---- a/ompi/mca/pml/ob1/pml_ob1.h -+++ b/ompi/mca/pml/ob1/pml_ob1.h -@@ -12,7 +12,7 @@ - * All rights reserved. - * Copyright (c) 2010 Oracle and/or its affiliates. All rights reserved - * Copyright (c) 2011 Sandia National Laboratories. All rights reserved. -- * Copyright (c) 2012-2015 Los Alamos National Security, LLC. All rights -+ * Copyright (c) 2012-2016 Los Alamos National Security, LLC. All rights - * reserved. - * Copyright (c) 2015 Research Organization for Information Science - * and Technology (RIST). All rights reserved. -@@ -61,6 +61,7 @@ struct mca_pml_ob1_t { - int max_rdma_per_request; - int max_send_per_range; - bool leave_pinned; -+ bool use_all_rdma; - int leave_pinned_pipeline; - - /* lock queue access */ -diff --git a/ompi/mca/pml/ob1/pml_ob1_component.c b/ompi/mca/pml/ob1/pml_ob1_component.c -index 5445f4b..e922c18 100644 ---- a/ompi/mca/pml/ob1/pml_ob1_component.c -+++ b/ompi/mca/pml/ob1/pml_ob1_component.c -@@ -198,6 +198,12 @@ static int mca_pml_ob1_component_register(void) - - mca_pml_ob1_param_register_uint("unexpected_limit", 128, &mca_pml_ob1.unexpected_limit); - -+ mca_pml_ob1.use_all_rdma = false; -+ (void) mca_base_component_var_register(&mca_pml_ob1_component.pmlm_version, "use_all_rdma", -+ "Use all available RDMA btls for the RDMA and RDMA pipeline protocols " -+ "(default: false)", MCA_BASE_VAR_TYPE_BOOL, NULL, 0, 0, -+ OPAL_INFO_LVL_5, MCA_BASE_VAR_SCOPE_GROUP, &mca_pml_ob1.use_all_rdma); -+ - mca_pml_ob1.allocator_name = "bucket"; - (void) mca_base_component_var_register(&mca_pml_ob1_component.pmlm_version, "allocator", - "Name of allocator component for unexpected messages", -diff --git a/ompi/mca/pml/ob1/pml_ob1_rdma.c b/ompi/mca/pml/ob1/pml_ob1_rdma.c -index 888e126..7513b24 100644 ---- a/ompi/mca/pml/ob1/pml_ob1_rdma.c -+++ b/ompi/mca/pml/ob1/pml_ob1_rdma.c -@@ -10,7 +10,7 @@ - * University of Stuttgart. All rights reserved. - * Copyright (c) 2004-2005 The Regents of the University of California. - * All rights reserved. -- * Copyright (c) 2014-2015 Los Alamos National Security, LLC. All rights -+ * Copyright (c) 2014-2016 Los Alamos National Security, LLC. All rights - * reserved. - * $COPYRIGHT$ - * -@@ -42,6 +42,7 @@ size_t mca_pml_ob1_rdma_btls( - mca_pml_ob1_com_btl_t* rdma_btls) - { - int num_btls = mca_bml_base_btl_array_get_size(&bml_endpoint->btl_rdma); -+ int num_eager_btls = mca_bml_base_btl_array_get_size (&bml_endpoint->btl_eager); - double weight_total = 0; - int num_btls_used = 0; - -@@ -57,6 +58,22 @@ size_t mca_pml_ob1_rdma_btls( - (bml_endpoint->btl_rdma_index + n) % num_btls); - mca_btl_base_registration_handle_t *reg_handle = NULL; - mca_btl_base_module_t *btl = bml_btl->btl; -+ /* NTH: go ahead and use an rdma btl if is the only one */ -+ bool ignore = !mca_pml_ob1.use_all_rdma; -+ -+ /* do not use rdma btls that are not in the eager list. this is necessary to avoid using -+ * btls that exist on the endpoint only to support RMA. */ -+ for (int i = 0 ; i < num_eager_btls && ignore ; ++i) { -+ mca_bml_base_btl_t *eager_btl = mca_bml_base_btl_array_get_index (&bml_endpoint->btl_eager, i); -+ if (eager_btl->btl_endpoint == bml_btl->btl_endpoint) { -+ ignore = false; -+ break; -+ } -+ } -+ -+ if (ignore) { -+ continue; -+ } - - if (btl->btl_register_mem) { - /* do not use the RDMA protocol with this btl if 1) leave pinned is disabled, -@@ -95,22 +112,66 @@ size_t mca_pml_ob1_rdma_btls( - return num_btls_used; - } - -+size_t mca_pml_ob1_rdma_pipeline_btls_count (mca_bml_base_endpoint_t* bml_endpoint) -+{ -+ int num_btls = mca_bml_base_btl_array_get_size (&bml_endpoint->btl_rdma); -+ int num_eager_btls = mca_bml_base_btl_array_get_size (&bml_endpoint->btl_eager); -+ int rdma_count = 0; -+ -+ for(int i = 0; i < num_btls && i < mca_pml_ob1.max_rdma_per_request; ++i) { -+ mca_bml_base_btl_t *bml_btl = mca_bml_base_btl_array_get_next(&bml_endpoint->btl_rdma); -+ /* NTH: go ahead and use an rdma btl if is the only one */ -+ bool ignore = !mca_pml_ob1.use_all_rdma; -+ -+ for (int i = 0 ; i < num_eager_btls && ignore ; ++i) { -+ mca_bml_base_btl_t *eager_btl = mca_bml_base_btl_array_get_index (&bml_endpoint->btl_eager, i); -+ if (eager_btl->btl_endpoint == bml_btl->btl_endpoint) { -+ ignore = false; -+ break; -+ } -+ } -+ -+ if (!ignore) { -+ ++rdma_count; -+ } -+ } -+ -+ return rdma_count; -+} -+ - size_t mca_pml_ob1_rdma_pipeline_btls( mca_bml_base_endpoint_t* bml_endpoint, - size_t size, - mca_pml_ob1_com_btl_t* rdma_btls ) - { -- int i, num_btls = mca_bml_base_btl_array_get_size(&bml_endpoint->btl_rdma); -+ int num_btls = mca_bml_base_btl_array_get_size (&bml_endpoint->btl_rdma); -+ int num_eager_btls = mca_bml_base_btl_array_get_size (&bml_endpoint->btl_eager); - double weight_total = 0; -+ int rdma_count = 0; -+ -+ for(int i = 0; i < num_btls && i < mca_pml_ob1.max_rdma_per_request; i++) { -+ mca_bml_base_btl_t *bml_btl = mca_bml_base_btl_array_get_next(&bml_endpoint->btl_rdma); -+ /* NTH: go ahead and use an rdma btl if is the only one */ -+ bool ignore = !mca_pml_ob1.use_all_rdma; -+ -+ for (int i = 0 ; i < num_eager_btls && ignore ; ++i) { -+ mca_bml_base_btl_t *eager_btl = mca_bml_base_btl_array_get_index (&bml_endpoint->btl_eager, i); -+ if (eager_btl->btl_endpoint == bml_btl->btl_endpoint) { -+ ignore = false; -+ break; -+ } -+ } -+ -+ if (ignore) { -+ continue; -+ } - -- for(i = 0; i < num_btls && i < mca_pml_ob1.max_rdma_per_request; i++) { -- rdma_btls[i].bml_btl = -- mca_bml_base_btl_array_get_next(&bml_endpoint->btl_rdma); -- rdma_btls[i].btl_reg = NULL; -+ rdma_btls[rdma_count].bml_btl = bml_btl; -+ rdma_btls[rdma_count++].btl_reg = NULL; - -- weight_total += rdma_btls[i].bml_btl->btl_weight; -+ weight_total += bml_btl->btl_weight; - } - -- mca_pml_ob1_calc_weighted_length(rdma_btls, i, size, weight_total); -+ mca_pml_ob1_calc_weighted_length (rdma_btls, rdma_count, size, weight_total); - -- return i; -+ return rdma_count; - } -diff --git a/ompi/mca/pml/ob1/pml_ob1_rdma.h b/ompi/mca/pml/ob1/pml_ob1_rdma.h -index 80e4fb2..7729043 100644 ---- a/ompi/mca/pml/ob1/pml_ob1_rdma.h -+++ b/ompi/mca/pml/ob1/pml_ob1_rdma.h -@@ -1,3 +1,4 @@ -+/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil -*- */ - /* - * Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana - * University Research and Technology -@@ -9,6 +10,8 @@ - * University of Stuttgart. All rights reserved. - * Copyright (c) 2004-2005 The Regents of the University of California. - * All rights reserved. -+ * Copyright (c) 2016 Los Alamos National Security, LLC. All rights -+ * reserved. - * $COPYRIGHT$ - * - * Additional copyrights may follow -@@ -37,5 +40,8 @@ size_t mca_pml_ob1_rdma_btls(struct mca_bml_base_endpoint_t* endpoint, - * bandwidth */ - size_t mca_pml_ob1_rdma_pipeline_btls(struct mca_bml_base_endpoint_t* endpoint, - size_t size, mca_pml_ob1_com_btl_t* rdma_btls); -+ -+size_t mca_pml_ob1_rdma_pipeline_btls_count (mca_bml_base_endpoint_t* bml_endpoint); -+ - #endif - -diff --git a/ompi/mca/pml/ob1/pml_ob1_recvreq.c b/ompi/mca/pml/ob1/pml_ob1_recvreq.c -index ef6d8a8..cfdb783 100644 ---- a/ompi/mca/pml/ob1/pml_ob1_recvreq.c -+++ b/ompi/mca/pml/ob1/pml_ob1_recvreq.c -@@ -263,7 +263,7 @@ static int mca_pml_ob1_recv_request_ack( - /* by default copy everything */ - recvreq->req_send_offset = bytes_received; - if(hdr->hdr_msg_length > bytes_received) { -- size_t rdma_num = mca_bml_base_btl_array_get_size(&bml_endpoint->btl_rdma); -+ size_t rdma_num = mca_pml_ob1_rdma_pipeline_btls_count (bml_endpoint); - /* - * lookup request buffer to determine if memory is already - * registered. diff --git a/packages/mpi/openmpi/openmpi-trunk b/packages/mpi/openmpi/openmpi-trunk deleted file mode 100755 index 36e9798..0000000 --- a/packages/mpi/openmpi/openmpi-trunk +++ /dev/null @@ -1,39 +0,0 @@ -#!/bin/sh -# sit class file -# -# Christoph Niethammer (C) 2011-2014 -# - -CATEGORY="mpi" -PACKAGE="openmpi" -VERSION="trunk" -URL="http://www.open-mpi.org" -INSTALLER="Christoph Niethammer " - -# Archive A and package name P -SRCDIR=${SRC_POOL}/openmpi-trunk - - -# Other interesting configure options: -# --enable-mpi-threads -# --enable-progress-threads -# --with-fca=DIR -# --enable-contrib-no-build=vt -CONFIGURE_OPTS=" - --with-devel-headers \ - --enable-shared \ - --enable-static \ - --enable-mpi-java \ - " - -src_unpack() { - /bin/true -} - -src_prepare() { - ./autogen.pl -} - -src_pretest() { - make check -}