Adding python_vanilla 3.10.4

packages/debugger/temanejo/temanejo-1.0_any

@@ -18,6 +18,7 @@ enable_module=${enable_module:=1}
 MODULE_TEMPLATE=${PREFIX_BASE}/${CATEGORY}/${PACKAGE}/modulefiles/HLRS_temanejo_modulefile.in
 # build OmpSs plugin; set to path to OmpSs installation
 enable_ompss=${enable_ompss:=0}
+enable_ompt=${enable_ompt:=0}
 
 # Archive A and package name P
 A=${PACKAGE}-${VERSION}.tar.gz
@@ -36,6 +37,9 @@ fi
 if [ $enable_ompss != 0 ]; then
     CONFIGURE_OPTS+=" --with-ompss=$enable_ompss "
 fi
+if [ $enable_ompt != 0 ]; then
+    CONFIGURE_OPTS+=" --enable-ompt "
+fi
 
 
 src_postinst() {

packages/development/python/vanilla_python-3.10.4

@@ -0,0 +1,140 @@
+#!/bin/sh
+# sit class file
+#
+# Christoph Niethammer <niethammer@hlrs.de> (C) 2018
+#
+
+CATEGORY="development"
+PACKAGE="python/vanilla_python"
+VERSION="3.10.4"
+SHORT_VERSION="3.10"
+URL="https://www.python.org/"
+INSTALLER="Jose Gracia <gracia@hlrs.de>"
+ 
+
+
+# Archive A and package name P
+A="Python-${VERSION}.tgz"
+P="Python-${VERSION}"
+
+
+# Other interesting configure options:
+#--enable-sampling \
+CONFIGURE_OPTS=" \
+	--enable-shared
+	--enable-unicode=ucs4
+	--enable-optimizations
+	--with-ensurepip
+        "
+
+
+case $PLATFORM in
+rocky|vulcan|laki|slc)
+        ;;
+hazelhen)
+        ;;
+*)
+        ;;
+esac
+
+src_postinst() {
+
+	set_symlinks
+
+	install_vanilla_packages
+	
+        install_share_directory
+
+	enable_pip_site
+
+	install_site_packages
+
+	echo "Stage postinst done."
+}
+
+install_vanilla_packages() {
+	# install numpy, mpi4py
+
+	export LD_LIBRARY_PATH=$PREFIX/lib/:$LD_LIBRARY_PATH
+	export PYTHONPATH=$PREFIX/lib/python${SHORT_VERSION}/site-packages
+
+	_PIP_SITE_INDEX_URL="http://localhost:3141/root/pypi/+simple/"
+	export PIP_DEFAULT_TIMEOUT=2
+	export PIP_DISABLE_PIP_VERSION_CHECK=1
+	export PIP_INDEX_URL=$_PIP_SITE_INDEX_URL
+
+	$PREFIX/bin/pip install numpy scipy dask
+	$PREFIX/bin/pip  list
+
+	# freeze site-packages directory 
+	chmod -R a-w $PREFIX/lib/python${SHORT_VERSION}/site-packages
+}
+
+install_site_packages() {
+	export PYTHON_SITE_HOME=$PREFIX/../../$SHORT_VERSION
+	echo "########### $PYTHON_SITE_HOME"
+	PATH=$PATH:$PYTHON_SITE_HOME/bin:$PREFIX/bin
+        PIP_SITE=$PYTHON_SITE_HOME/bin/pip-site
+	PACKAGES=$PYTHON_SITE_HOME/../share/artifacts/default_requirements.txt
+	[ -f "$PIP_SITE" ] && $PIP_SITE install --user -r $PACKAGES 
+}
+
+install_share_directory() {
+	# create link if shared directory does not exist
+	GENERAL_PYTHON=/sw/general/x86_64/development/python
+	PYTHON_PREFIX=$PREFIX/../../       # all python stuff is here
+	SHARED=$PYTHON_PREFIX/share
+	[ ! -d "$SHARED" ] && ln -s $GENERAL_PYTHON/share $SHARED
+
+	# report
+	[ -d "$SHARED" ] && echo "Share directory is present."
+}
+
+enable_pip_site() {
+	# create link from share/bin/pip-site into $SHORT_VERSION/bin
+	PYTHON_SITE_HOME=$PREFIX/../../$SHORT_VERSION
+	PIP_SITE=$PYTHON_SITE_HOME/bin/pip-site
+	mkdir -p $PYTHON_SITE_HOME/bin
+	[ ! -f "$PIP_SITE" ] && ln -s $PYTHON_SITE_HOME/../share/bin/pip-site $PIP_SITE
+	# create directory for logs 
+	mkdir -p $PYTHON_SITE_HOME/logs
+
+        # report
+        [ -f "$PIP_SITE" ] && echo "pip-site is present."
+        [ ! -f "$PIP_SITE" ] && echo "pip-site is NOT present."
+}
+
+src_setperms() {
+    chmod -R g=u $PREFIX
+    chmod -R o=u-w  $PREFIX
+}
+
+
+set_symlinks() {
+	# Adding some symlinks
+	# Actually PEP 394  recomments against this, but we will do it anyway
+
+	cd $PREFIX/bin
+	FILES="python pip pydoc"
+	for FILE in $FILES; do
+		if [ ! -f $FILE ]; then
+			if [ -f ${FILE}3 ]; then
+				ln -s ${FILE}3 ${FILE}
+			fi
+		fi
+	done
+	FILE="python3-config"
+	if [ ! -f $FILE ]; then
+		ln -s ${FILE} python-config
+	fi
+}
+
+
+# src_build() {
+# 	make shared add_binutils_objs
+# }
+#
+# src_install() {
+#     ln -s ../$PACKAGE-$VERSION/doc .
+#     make install  || sit_fail "Installation failed"
+# }

packages/development/python/vanilla_python-3.8.1

@@ -0,0 +1,103 @@
+#!/bin/sh
+# sit class file
+#
+# Christoph Niethammer <niethammer@hlrs.de> (C) 2018
+#
+
+CATEGORY="development"
+PACKAGE="python/vanilla_python"
+VERSION="3.8.1"
+SHORT_VERSION="3.8"
+URL="https://www.python.org/"
+INSTALLER="Jose Gracia <gracia@hlrs.de>"
+ 
+
+
+# Archive A and package name P
+A="Python-${VERSION}.tgz"
+P="Python-${VERSION}"
+
+
+# Other interesting configure options:
+#--enable-sampling \
+CONFIGURE_OPTS=" \
+	--enable-shared
+	--enable-unicode=ucs4
+	--enable-optimizations
+	--with-ensurepip
+        "
+
+
+case $PLATFORM in
+vulcan|laki|slc)
+        ;;
+hazelhen)
+        ;;
+*)
+        ;;
+esac
+
+src_postinst() {
+
+	set_symlinks
+
+	install_vanilla_packages
+
+	#install_site_packages
+	
+	echo "******** DO NOT FORGET to enable pip-site mechanism"
+}
+
+install_vanilla_packages() {
+	# install numpy, mpi4py
+
+	export LD_LIBRARY_PATH=$PREFIX/lib/:$LD_LIBRARY_PATH
+	export PYTHONPATH=$PREFIX/lib/python${SHORT_VERSION}/site-packages
+
+	_PIP_SITE_INDEX_URL="http://localhost:3141/root/pypi/+simple/"
+	export PIP_DEFAULT_TIMEOUT=2
+	export PIP_DISABLE_PIP_VERSION_CHECK=1
+	export PIP_INDEX_URL=$_PIP_SITE_INDEX_URL
+
+	$PREFIX/bin/pip install numpy scipy dask
+	$PREFIX/bin/pip  list
+
+	# freeze site-packages directory 
+	chmod -R a-w $PREFIX/lib/python${SHORT_VERSION}/site-packages
+}
+
+install_site_packages() {
+	/bin/true
+}
+
+
+src_setperms() {
+    chmod -R g=u $PREFIX
+    chmod -R o=u-w  $PREFIX
+}
+
+
+set_symlinks() {
+	# Adding some symlinks
+	# Actually PEP 394  recomments against this, but we will do it anyway
+
+	cd $PREFIX/bin
+	FILES="python pip pydoc"
+	for FILE in $FILES; do
+		if [ ! -f $FILE ]; then
+			if [ -f ${FILE}3 ]; then
+				ln -s ${FILE}3 ${FILE}
+			fi
+		fi
+	done
+}
+
+
+# src_build() {
+# 	make shared add_binutils_objs
+# }
+#
+# src_install() {
+#     ln -s ../$PACKAGE-$VERSION/doc .
+#     make install  || sit_fail "Installation failed"
+# }

packages/development/python/vanilla_python-3.8.3

@@ -0,0 +1,107 @@
+#!/bin/sh
+# sit class file
+#
+# Christoph Niethammer <niethammer@hlrs.de> (C) 2018
+#
+
+CATEGORY="development"
+PACKAGE="python/vanilla_python"
+VERSION="3.8.3"
+SHORT_VERSION="3.8"
+URL="https://www.python.org/"
+INSTALLER="Jose Gracia <gracia@hlrs.de>"
+ 
+
+
+# Archive A and package name P
+A="Python-${VERSION}.tgz"
+P="Python-${VERSION}"
+
+
+# Other interesting configure options:
+#--enable-sampling \
+CONFIGURE_OPTS=" \
+	--enable-shared
+	--enable-unicode=ucs4
+	--enable-optimizations
+	--with-ensurepip
+        "
+
+
+case $PLATFORM in
+vulcan|laki|slc)
+        ;;
+hazelhen)
+        ;;
+*)
+        ;;
+esac
+
+src_postinst() {
+
+	set_symlinks
+
+	install_vanilla_packages
+
+	#install_site_packages
+	
+	echo "******** DO NOT FORGET to enable pip-site mechanism"
+}
+
+install_vanilla_packages() {
+	# install numpy, mpi4py
+
+	export LD_LIBRARY_PATH=$PREFIX/lib/:$LD_LIBRARY_PATH
+	export PYTHONPATH=$PREFIX/lib/python${SHORT_VERSION}/site-packages
+
+	_PIP_SITE_INDEX_URL="http://localhost:3141/root/pypi/+simple/"
+	export PIP_DEFAULT_TIMEOUT=2
+	export PIP_DISABLE_PIP_VERSION_CHECK=1
+	export PIP_INDEX_URL=$_PIP_SITE_INDEX_URL
+
+	$PREFIX/bin/pip install numpy scipy dask
+	$PREFIX/bin/pip  list
+
+	# freeze site-packages directory 
+	chmod -R a-w $PREFIX/lib/python${SHORT_VERSION}/site-packages
+}
+
+install_site_packages() {
+	/bin/true
+}
+
+
+src_setperms() {
+    chmod -R g=u $PREFIX
+    chmod -R o=u-w  $PREFIX
+}
+
+
+set_symlinks() {
+	# Adding some symlinks
+	# Actually PEP 394  recomments against this, but we will do it anyway
+
+	cd $PREFIX/bin
+	FILES="python pip pydoc"
+	for FILE in $FILES; do
+		if [ ! -f $FILE ]; then
+			if [ -f ${FILE}3 ]; then
+				ln -s ${FILE}3 ${FILE}
+			fi
+		fi
+	done
+	FILE="python3-config"
+	if [ ! -f $FILE ]; then
+		ln -s ${FILE} python-config
+	fi
+}
+
+
+# src_build() {
+# 	make shared add_binutils_objs
+# }
+#
+# src_install() {
+#     ln -s ../$PACKAGE-$VERSION/doc .
+#     make install  || sit_fail "Installation failed"
+# }

packages/libs/nanox/nanox-any

@@ -11,6 +11,9 @@
 # * decide on a version number for the user-visible package,
 #   e.g. the nanox version, and set OMPSS_VERSION=xxx
 # * choose a nanox version
+# * dependencies:
+#   * HWLOC_HOME=/opt/compiler/ompss/common; PATH=$HWLOC_HOME/bin/:$PATH
+#   * module load performance/extrae
 # * install libs/nanox with: 
 #   NANOX_VERSION=0.7a-2014-04-10 VERSION=$OMPSS_VERSION \
 #   COMPILER=gnu  CATEGORY=compiler PREFIX_BASE=$YOUR_PREFIX_BASE
@@ -43,6 +46,8 @@ enable_ayudame=${enable_ayudame:=0}
 enable_debug=${enable_debug:=0}
 # enable hwloc
 enable_hwloc=${enable_hwloc:=1} 
+# disable hardcoding library paths / rpath 
+disable_rpath=${disable_rpath:=1} 
 
 # Other interesting configure options:
 #CONFIGURE_OPTS=" \
@@ -65,7 +70,7 @@ if [ $enable_debug == 1 ] ; then
 fi
 
 if [ $enable_extrae == 1 ] ; then
-    module load performance/extrae
+    #module load performance/extrae
     echo "Building with EXTRAE_HOME=$EXTRAE_HOME"
     CONFIGURE_OPTS+=" --with-extrae=$EXTRAE_HOME"
 fi
@@ -82,6 +87,9 @@ if [ $enable_hwloc == 1 ] ; then
     CONFIGURE_OPTS+=" --with-hwloc=$HWLOC_DIR"
 fi
 
+if [ $disable_rpath == 1 ] ; then
+    CONFIGURE_OPTS+=" --disable-rpath"
+fi
 
 src_pretest() {
 	/bin/true

packages/performance/extrae/extrae-3.7.1

@@ -19,16 +19,25 @@ enable_papi=${enable_papi:=1}
 # Other interesting configure options:
 #--disable-doc \
 sit_info "MPI_DIR $MPI_DIR"
+MPI_DIR=${MPI_ROOT:=$(dirname $(dirname $(which mpicc)))}      
 CONFIGURE_OPTS="\
 		--with-mpi=$MPI_DIR \
-        --with-mpi-headers=${MPI_INC_DIR:=$MPI_DIR/lib}
-        --with-mpi-libs=${MPI_LIB_DIR:=$MPI_DIR/lib}
 		--enable-sampling
 		--enable-posix-clock \
 		--without-unwind \
 		--without-dyninst \
 		"
+CFLAGS+="-g -O2 -Wno-error"
+CXXFLAGS+="-g -O2 -Wno-error"
+
 case $PLATFORM in
+    hawk)
+	BINUTILS_DIR=${BINUTILS_ROOT:=$(dirname $(dirname $(which ld)))}
+	CONFIGURE_OPTS+="\
+	       		  --with-binutils=$BINUTILS_ROOT \
+       		          --with-unwind=$LIBUNWIND_ROOT \
+			"
+	;;
     hornet|hazelhen)
         CFLAGS+=" -dynamic"
         LDFLAGS+=" -dynamic -lrt"

packages/performance/extrae/extrae-3.8.3

@@ -16,6 +16,9 @@ P=${PACKAGE}-${VERSION}
 
 enable_papi=${enable_papi:=1}
 
+#module unload binutils
+module list
+
 # Other interesting configure options:
 #--disable-doc \
 sit_info "MPI_DIR $MPI_DIR"
@@ -32,9 +35,10 @@ CXXFLAGS+="-g -O2 -Wno-error"
 
 case $PLATFORM in
     hawk)
+	module load papi libunwind binutils
 	BINUTILS_DIR=${BINUTILS_ROOT:=$(dirname $(dirname $(which ld)))}
 	CONFIGURE_OPTS+="\
-	       		  --with-binutils=$BINUTILS_ROOT \
+	       		  --with-binutils=$BINUTILS_DIR \
        		          --with-unwind=$LIBUNWIND_ROOT \
 			"
 	;;

sit

@@ -6,6 +6,7 @@
 #
 
 set -e
+#set -x
 
 function show_help() {
     echo "Usage: $0 [options] [action] <sit package name>"
@@ -128,9 +129,13 @@ else
                     module swap $COMPILER $COMPILER/$COMPILER_VERSION
                 fi
                 # adjust MPICH and libsci versions to match compiler
-                module load cray-mpich-compat/v7  ||  module load cray-mpich-compat/v6
+                # module load cray-mpich-compat/v7  ||  module load cray-mpich-compat/v6
             fi
             MPI_DIR=$MPICH_DIR
+	    module unload craype-hugepages16M 
+	    module sw craype-network-aries craype-network-none
+	    module unload cray-mpich
+	    module sw craype-haswell craype-sandybridge 
             ;;
 	hawk)
             if [ -z "$COMPILER_VERSION" ] ; then