Modified check_modules.sh script running the mpi_test_suite for allOpen MPI instalaltions.
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5 changed files with 156 additions and 8 deletions
133
check_mpi.sh
Executable file
133
check_mpi.sh
Executable file
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#!/bin/bash -l
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#
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# Christoph Niethammer <niethammer@hlrs.de>, (c) 2012
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#
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# Script checking the module environment for problems during module loading/unloading
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#
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# Usage:
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# check_modules.sh [MODULE]
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#
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# Options:
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# MODULE May be any valid module path as used for 'module avail [MODULE]'
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#
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# Command line options:
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moduleclass=mpi/openmpi # check only subset of modules
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mpi_test_suite_dir=$HOME/mpi_test_suite.latest
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# definitions for esear color output to display
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Color_Off='\e[0m' # Text Reset
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IGreen='\e[0;92m' # Intense Green
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IRed='\e[0;91m' # Intense Red
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# intermediate files, logfiles
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LOGDIR=${LOGDIR:=$PWD}
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tmpdir=/tmp/check_modules-$USER
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mkdir -p $tmpdir
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logfile="$LOGDIR/check_modules.log" # logfile with detailed information
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module_load_logfile="$tmpdir/.module_load.log" # output of 'module load commands
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module_rm_logfile="$tmpdir/.module_rm.log" # output of 'module rm' commands
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module_clean_env_file="$tmpdir/.module_clean_env" # original environment
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# safe the original environment
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set > $module_clean_env_file
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# list of all failed modules
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failed_modules=()
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echo "--------------------" | tee $logfile
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echo "Module environment check" | tee -a $logfile
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echo "--------------------" | tee -a $logfile
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echo "Date: $(date)" | tee -a $logfile
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echo "Host: $(/bin/hostname)" | tee -a $logfile
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echo "USER: $USER" | tee -a $logfile
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echo "Logfile: $logfile" | tee -a $logfile
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echo "--------------------" | tee -a $logfile
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echo "Environment:" >> $logfile
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cat $module_clean_env_file >> $logfile
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echo "--------------------" >> $logfile
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for m_original in $(module av -t $moduleclass 2>&1); do
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if [[ $m_original =~ ^[A-Za-z] ]]; then # skip any non module line in output
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m=$(echo $m_original | sed -e 's/(.*)//') # Remove aliases e.g. (default)
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echo -n "Checking $m_original ... "
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echo "Checking $m_original ... " >> $logfile
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cmd="module load $m"
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echo $cmd >> $logfile
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$cmd > $module_load_logfile 2>&1
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cat $module_load_logfile >> $logfile
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module li >>$logfile 2>&1
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# check if module was loaded and did not report errors during loading
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if module li -t 2>&1 | grep $m >/dev/null && ! grep ERROR $module_load_logfile >/dev/null ; then
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mpi_test_suite_log=$(echo $m | sed -e's/\//_/g').log
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cd $mpi_test_suite_dir
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make clean >$mpi_test_suite_log 2>&1
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make -j $(grep processor /proc/cpuinfo | wc -l) >>$mpi_test_suite_log 2>&1
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mpirun -np $(grep processor /proc/cpuinfo | wc -l) mpi_test_suite -t All,^io,^one-sided >>$mpi_test_suite_log 2>&1
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if grep "Number of failed tests:0" $mpi_test_suite_log >/dev/null ; then
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echo -en "${IGreen}passed test suite${Color_Off} ... "
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echo -e "passed test suite" >> $logfile
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else
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echo -en "${IRed}Testsuite failed${Color_Off} "
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echo "ERROR: Testsuite failed for module '$m'" >> $logfile
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failed_modules=(${failed_modules[@]} $m_original)
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fi
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cmd="module rm $m"
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echo $cmd >> $logfile
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$cmd > $module_rm_logfile 2>&1
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cat $module_rm_logfile >> $logfile
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module li >>$logfile 2>&1
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# check if module was unloaded
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if module li -t 2>&1 | grep $m > /dev/null; then
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echo -e "${IRed}unloading failed${Color_Off}"
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echo "ERROR: unloading module '$m' failed" >> $logfile
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failed_modules=(${failed_modules[@]} $m_original)
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else
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echo -e "${IGreen}success${Color_Off}"
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echo "SUCCESS" >> $logfile
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fi
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else
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echo -e "${IRed}loading failed${Color_Off}"
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echo "ERROR: loading module '$m' failed" >> $logfile
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failed_modules=(${failed_modules[@]} $m)
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fi
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# clean up module environment
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cmd="module purge"
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echo $cmd >> $logfile
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$cmd >>$logfile 2>&1
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module li >>$logfile 2>&1
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echo "Resetting environment ..." >>$logfile
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# Reset the complete environment manually to overcome problems with
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# inconsistent internal caches of the module command after module purge.
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source $module_clean_env_file 2>/dev/null
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# clean up intermediate files
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rm -f $module_load_logfile
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rm -f $module_rm_logfile
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echo >>$logfile 2>&1
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fi
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done
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# clean up file storing the initial environment
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rm -f $module_clean_env_file
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rm -rf $tmpdir
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echo "----------------------------------------"
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echo "Summary of failed modules (${#failed_modules[@]}):"
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echo "----------------------------------------"
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for m in ${failed_modules[@]}; do
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echo "$m"
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done
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echo "----------------------------------------"
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@ -24,6 +24,7 @@ parser.add_option("--logdir", metavar="DIR", dest="logdir")
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parser.add_option("--startdate", metavar="YYYY-MM-DD", dest="startdate")
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parser.add_option("--enddate", metavar="YYYY-MM-DD", dest="enddate")
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parser.add_option("--nohpc", action="store_true", default=False, dest="nohpc", help="Exclude hpc* accounts from stats")
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parser.add_option("--printusers", action="store_true", default=False, dest="printusers", help="Print detailed user lists for module usage.")
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(options, args) = parser.parse_args()
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if options.logdir :
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logdir = options.logdir
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@ -76,8 +77,10 @@ print "{0:60s}{1:>8s} {2:>8s}".format('module name', '# uses', '# users')
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print "-"*78
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for (v,m) in sorted( ((v,k) for k,v in modulestats.iteritems()), reverse=True) :
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print "{0:60s}{1:>8d} {2:>8d}".format(m, v, len(moduleusers[m].keys()))
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#print moduleusers[m]
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if options.printusers :
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print moduleusers[m]
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print "-"*78
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print "{0:60s}{1:>8d} {2:>8d}".format('total', total_modules, len(total_users))
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#print sorted([ (u) for u in total_users ])
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if options.printusers :
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print sorted([ (u) for u in total_users ])
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print "-"*78
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@ -34,7 +34,10 @@ src_unpack() {
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}
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src_pretest() {
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make check
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tar xfz ${SRC_POOL}/dejagnu-1.5.tar.gz
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DEJAGNUDIR=$PWD/dejagnu-1.5
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cd objdir
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DEJAGNULIBS=$DEJAGNUDIR/lib make -k check
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}
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# Other interesting configure options:
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@ -24,7 +24,11 @@ enable_cuda=${enable_cuda:=0}
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if [[ $PLATFORM == "hermit1" ]] ; then
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CONFIGURE_OPTS=" \
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--build=x86_64-unknown-linux-gnu \
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--host=x86_64-cray-linux-gnu \
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--without-cross-prefix \
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--with-platform=crayxe \
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--disable-exectrace \
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"
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else
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CONFIGURE_OPTS=" \
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@ -49,14 +49,19 @@ fi
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# use CUDA
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if [ $enable_cuda != 0 ] ; then
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module load cuda
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if [[ $PLATFORM == "hermit1" ]] ; then
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module load craype-accel-nvidia35
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else
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module load cuda
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fi
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#--with-cuda-inc-dir=$CUDA_DIR/include \
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#--with-cuda-lib-dir=$CUDA_DIR/lib \
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#--with-cudart-lib-dir=$CUDA_DIR/lib64 \
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#--with-cudart-dir=$CUDA_DIR \
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CUDA_DIR=${CUDA_DIR:=$(dirname $(dirname $(which nvcc)))}
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CONFIGURE_OPTS="${CONFIGURE_OPTS} \
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--with-cuda-dir=$CUDA_DIR \
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--with-cuda-inc-dir=$CUDA_DIR/include \
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--with-cuda-lib-dir=$CUDA_DIR/lib \
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--with-cudart-dir=$CUDA_DIR \
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--with-cudart-lib-dir=$CUDA_DIR/lib64 \
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-with-cupti-dir=$CUDA_DIR/extras/CUPTI
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"
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fi
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