update of package scripts for new versions
This commit is contained in:
Elke Flehmig
parent
37d7badfaf
commit
a02204d66d
6 changed files with 302 additions and 26 deletions
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@ -4,7 +4,7 @@
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# Christoph Niethammer <niethammer@hlrs.de> (C) 2012
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#
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# sit command for intel:
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# PREFIX_BASE=/opt COMPILER=intel COMPILER_VERSION=13.1.2 MPI=impi MPI_VERSION=4.1.1.036 ./sit numlib/petsc/petsc-3.4.0
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# PREFIX_BASE=/opt COMPILER=intel COMPILER_VERSION=13.1.3 MPI=impi MPI_VERSION=4.1.3.045 ./sit numlib/petsc/3.4.0
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#
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# sit command for gnu:
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# PREFIX_BASE=/opt COMPILER=gnu COMPILER_VERSION=4.7.3 MPI=openmpi MPI_VERSION=1.6.5 ./sit numlib/petsc/3.4.0
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@ -32,7 +32,9 @@ case $COMPILER in
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intel)
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ARCH=linux-gnu-intel
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module load numlib/intel/mkl/11.0
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BLAS_LAPACK="--with-blas-lapack-dir=/opt/compiler/intel/composer_xe_2013-2-146/composer_xe_2013/mkl/lib/intel64"
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BLAS_LAPACK="--with-blas-lapack-dir=$MKLPATH"
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echo "BLAS_LAPACK=$BLAS_LAPACK"
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#BLAS_LAPACK="--with-blas-lapack-dir=/opt/compiler/intel/composer_xe_2013-2-146/composer_xe_2013/mkl/lib/intel64"
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;;
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esac
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@ -49,7 +51,6 @@ CONFIGURE_OPTS="
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--with-fortran-datatypes=1 \
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$BLAS_LAPACK \
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"
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# default is make -j, which doesn't work here!
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#(petsc automatically builds parallel)
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MAKEOPTS=""
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@ -4,7 +4,7 @@
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# Christoph Niethammer <niethammer@hlrs.de> (C) 2012
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#
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# laki sit command:
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# PREFIX_BASE=/opt COMPILER=gnu COMPILER_VERSION=4.7.3 MPI=openmpi MPI_VERSION=1.6.4 ./sit numlib/scotch/6.0.0
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# PREFIX_BASE=/opt COMPILER=gnu COMPILER_VERSION=4.7.3 MPI=openmpi MPI_VERSION=1.6.5 ./sit numlib/scotch/6.0.0
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#
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# hermit sit command:
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# PREFIX_BASE=/opt/hlrs ./sit numlib/scotch/6.0.0
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@ -22,7 +22,7 @@ P=${PACKAGE}_${VERSION}/src
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BUILDDIR=$SRCDIR
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src_prepare() {
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case $PLATFORM in
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case $PLATFORM in
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hermit|hermit1)
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# there are some GNU extensions Cray compiler doesn't (yet) know about
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module swap PrgEnv-cray PrgEnv-gnu
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@ -44,7 +44,7 @@ case $PLATFORM in
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echo "Building for laki."
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# link most fitting Makefile.inc sample:
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cd $SRCDIR
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ln -s Make.inc/Makefile.inc.x86-64_pc_linux2 Makefile.inc
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cp Make.inc/Makefile.inc.x86-64_pc_linux2 Makefile.inc
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echo "Linking Makefile.inc in $SRCDIR"
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# add options to CFLAGS:
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# -DINTSIZE64 -DCOMMON_MEMORY_TRACE -DSCOTCH_METIS_PREFIX
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@ -52,27 +52,15 @@ case $PLATFORM in
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# -DCOMMON_MEMORY_TRACE - enable monitoring of memory allocation
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# -DSCOTCH_METIS_PREFIX - prefix scotch versions of metis files so as to avoid multiply defined symbol conflicts when using scotch and metis together
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# set CCD to avoid compilation errors for ptscotch:
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# CCD = mpicc
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# CCD = mpicc
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patch Makefile.inc < $SRC_POOL/6.0.0_Makefile.inc_patch_laki
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# check fails on cray (for now...)
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src_pretest() {
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# add stdint.h to testfile to avoid failure
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patch check/test_strat_seq.c < $SRC_POOL/6.0.0_test_strat_seq.c_patch_laki
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sit_info "Checking scotch..."
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make check || sit_fail "Checking scotch failed"
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# ptcheck uses mpirun/requires qsub, which we will not process here
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# may be done separately after installation...
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# patch check/test_strat_par.c < $SRC_POOL/6.0.0_test_strat_par.c_patch_laki
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# make ptcheck
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}
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;;
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esac
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;;
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esac
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# set installation target path for prefix:
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cd $SRCDIR
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sed -i -e "/^prefix.*\?= /s#/usr/local#$PREFIX#" Makefile
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cd $SRCDIR
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sed -i -e "/^prefix.*\?= /s#/usr/local#$PREFIX#" Makefile
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}
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sit_configure() {
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@ -86,6 +74,18 @@ src_build() {
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make ptscotch || sit_fail "Building ptscotch failed"
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}
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# check fails on cray (for now...)
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src_pretest() {
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# add stdint.h to testfile to avoid failure
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patch check/test_strat_seq.c < $SRC_POOL/6.0.0_test_strat_seq.c_patch_laki
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sit_info "Checking scotch..."
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make check || sit_fail "Checking scotch failed"
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# ptcheck uses mpirun/requires qsub, which we will not process here
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# may be done separately after installation...
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# patch check/test_strat_par.c < $SRC_POOL/6.0.0_test_strat_par.c_patch_laki
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# make ptcheck
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}
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src_install() {
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mkdir -p $PREFIX
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make install || sit_fail "Installation failed"
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110
packages/numlib/trilinos/11.4.3
Executable file
110
packages/numlib/trilinos/11.4.3
Executable file
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@ -0,0 +1,110 @@
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#!/bin/sh
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# sit class file
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#
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# Christoph Niethammer <niethammer@hlrs.de> (C) 2012
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#
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# sit command:
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# PREFIX_BASE=/opt ./sit numlib/trilinos/11.4.3
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#
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# sit command for trilinos with mpi:
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# PREFIX_BASE=/opt COMPILER=gnu COMPILER_VERSION=4.7.3 MPI=openmpi MPI_VERSION=1.6.5 ./sit numlib/trilinos/11.4.3
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CATEGORY="numlib"
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PACKAGE="trilinos"
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VERSION="11.4.3"
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URL="http://trilinos.sandia.gov/"
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INSTALLER="Elke Flehmig <flehmig@hlrs.de>"
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# cmake 2.8 or higher is required
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case $PLATFORM in
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hermit|hermit1)
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sit_fail "on hermit, trilinos is installed by cray!"
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;;
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esac
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# now continue for laki
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module load tools/cmake/2.8.12
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# Archive A and package name P
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A=${PACKAGE}-${VERSION}-Source.tar.gz
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P=${PACKAGE}-${VERSION}-Source
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src_configure() {
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cd $BUILDDIR
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export TRILINOS_PATH=$SRCDIR
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# export EXTRA_ARGS=$@
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export EXTRA_ARGS=""
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# Each invocation of CMake caches the values of build options in a
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# CMakeCache.txt file. If you run CMake again without deleting the
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# CMakeCache.txt file, CMake won't notice any build options that have
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# changed, because it found their original values in the cache file.
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# Deleting the CMakeCache.txt file before invoking CMake will insure
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# that CMake learns about any build options you may have changed.
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#
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# not necessary because sit reruns clean up everything at first
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# rm -f CMakeCache.txt
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#
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# A sampling of CMake build options.
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#
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# CMAKE_INSTALL_PREFIX: Where to install Trilinos.
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# CMAKE_BUILD_TYPE: DEBUG or RELEASE.
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# CMAKE_CXX_COMPILER: The C++ compiler to use when building Trilinos.
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# CMAKE_C_COMPILER: The C compiler to use when building Trilinos.
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# Some parts of Trilinos are implemented in C.
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# CMAKE_Fortran_COMPILER: The Fortran compiler to use when building
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# Trilinos. Some parts of Trilinos are implemented in Fortran.
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# HAVE_GCC_ABI_DEMANGLE: Setting this option to ON improves
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# debugging messages.
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# CMAKE_VERBOSE_MAKEFILE: Set to OFF (or FALSE) if you prefer a quiet
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# build.
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# Trilinos_ENABLE_ALL_PACKAGES: If you like, you can build _all_ of
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# Trilinos, but you don't have to.
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# Trilinos_ENABLE_Epetra: If ON, build Epetra.
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# Trilinos_ENABLE_Triutils: If ON, bulid Triutils.
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# Trilinos_ENABLE_TESTS: If ON, build the tests for all packages that
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# are to be built.
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# Trilinos_ENABLE_EXAMPLES: If ON, build the examples for all
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# packages that are to be built.
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if [ -z "$MPI" ] ; then
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export CMAKE_ARGS="
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-D CMAKE_INSTALL_PREFIX:PATH=$PREFIX \
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-D CMAKE_BUILD_TYPE:STRING=DEBUG \
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-D CMAKE_CXX_COMPILER:FILEPATH=/usr/bin/g++ \
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-D CMAKE_C_COMPILER:FILEPATH=/usr/bin/gcc \
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-D CMAKE_Fortran_COMPILER:FILEPATH=/usr/bin/gfortran \
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-D HAVE_GCC_ABI_DEMANGLE:BOOL=ON \
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-D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
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-D CMAKE_VERBOSE_MAKEFILE:BOOL=ON \
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-D Trilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
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-D Trilinos_ENABLE_TESTS:BOOL=ON \
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"
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else
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export CMAKE_ARGS="
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-D CMAKE_INSTALL_PREFIX:PATH=$PREFIX \
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-D CMAKE_BUILD_TYPE:STRING=DEBUG \
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-D CMAKE_CXX_COMPILER:FILEPATH=mpicxx \
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-D CMAKE_C_COMPILER:FILEPATH=mpicc \
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-D CMAKE_Fortran_COMPILER:FILEPATH=mpif90 \
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-D HAVE_GCC_ABI_DEMANGLE:BOOL=ON \
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-D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
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-D CMAKE_VERBOSE_MAKEFILE:BOOL=ON \
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-D Trilinos_ENABLE_ALL_PACKAGES:BOOL=ON \
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-D Trilinos_ENABLE_TESTS:BOOL=ON \
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-D TPL_ENABLE_MPI:BOOL=ON \
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-D MPI_BASE_DIR:PATH=/opt/mpi/$MPI/$MPI_VERSION \
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"
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fi
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cmake \
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${CMAKE_ARGS} \
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$EXTRA_ARGS \
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${TRILINOS_PATH}
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}
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src_pretest() {
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make test $MAKEOPTS
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}
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50
packages/numlib/zoltan/3.6-parmetis-4.0.3-scotch-6.0.0
Executable file
50
packages/numlib/zoltan/3.6-parmetis-4.0.3-scotch-6.0.0
Executable file
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@ -0,0 +1,50 @@
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#!/bin/sh
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# sit class file
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#
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# Christoph Niethammer <niethammer@hlrs.de> (C) 2012
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#
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# laki sit command:
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# TODO! not yet installed with sit
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#
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# hermit sit command:
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# PREFIX_BASE=/opt/hlrs ./sit numlib/zoltan/3.6-parmetis-4.0.3-scotch-6.0.0
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CATEGORY="numlib"
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PACKAGE="zoltan"
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ZOLTAN_VERSION="3.6"
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VERSION="3.6-parmetis-4.0.3-scotch-6.0.0"
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URL="http://www.labri.fr/perso/pelegrin/scotch/"
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INSTALLER="Elke Flehmig <flehmig@hlrs.de>"
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# Archive A and package name P
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A=${PACKAGE}_${ZOLTAN_VERSION}.tgz
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P=${PACKAGE}_${ZOLTAN_VERSION}/Zoltan_v3.6
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module load numlib/scotch/6.0.0
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module load numlib/parmetis/4.0.3
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module load numlib/metis/5.1.0
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src_prepare() {
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case $PLATFORM in
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hermit|hermit1)
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echo "Building for hermit."
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;;
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laki|*)
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echo "Building for laki."
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;;
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esac
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}
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CONFIGURE_OPTS="CC=cc CXX=CC --with-id-type=ullong --with-scotch --with-scotch-incdir=/sw/hermit1/hlrs/numlib/scotch/6.0.0/include --with-scotch-libdir=/sw/hermit1/hlrs/numlib/scotch/6.0.0/lib --with-parmetis --with-parmetis-incdir=/sw/hermit1/hlrs/numlib/parmetis/4.0.3/include --with-parmetis-libdir=/sw/hermit1/hlrs/numlib/parmetis/4.0.3/lib --with-libdirs=\"-L/sw/hermit1/hlrs/numlib/metis/5.1.0/lib\" --with-incdirs=\"-I/sw/hermit1/hlrs/numlib/metis/5.1.0/include\" --with-libs=\"-lscotch\""
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src_pretest() {
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sit_info "Checking zoltan ..."
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make check || sit_fail "Checking zoltan failed"
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}
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src_postinst() {
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# as examples and doc are already installed with zoltan/3.6, simply set a link:
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cd $PREFIX
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ln -s /sw/hermit1/hlrs/numlib/zoltan/3.6/examples
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ln -s /sw/hermit1/hlrs/numlib/zoltan/3.6/doc
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}
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47
packages/numlib/zoltan/3.8
Executable file
47
packages/numlib/zoltan/3.8
Executable file
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@ -0,0 +1,47 @@
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#!/bin/sh
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# sit class file
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#
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# Christoph Niethammer <niethammer@hlrs.de> (C) 2012
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#
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# laki sit command:
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# PREFIX_BASE=/opt COMPILER=gnu COMPILER_VERSION=4.7.3 MPI=openmpi MPI_VERSION=1.6.5 ./sit numlib/zoltan/3.8
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#
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# hermit sit command:
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# PREFIX_BASE=/opt/hlrs COMPILER=pgi COMPILER_VERSION=13.9.0 ./sit numlib/zoltan/3.8
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CATEGORY="numlib"
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PACKAGE="zoltan"
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VERSION="3.8"
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URL="http://www.labri.fr/perso/pelegrin/scotch/"
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INSTALLER="Elke Flehmig <flehmig@hlrs.de>"
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# Archive A and package name P
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A=${PACKAGE}_distrib_v${VERSION}.tar.gz
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P=Zoltan_v${VERSION}
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src_prepare() {
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case $PLATFORM in
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hermit|hermit1)
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echo "Building for hermit."
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CONFIGURE_OPTS="--with-id-type=ullong CC=cc CXX=CC"
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;;
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laki|*)
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echo "Building for laki."
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CONFIGURE_OPTS="--with-id-type=ullong CC=mpicc CXX=mpicxx"
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;;
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esac
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}
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src_pretest() {
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sit_info "Checking zoltan ..."
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make check || sit_fail "Checking zoltan failed"
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sit_info "Building examples ..."
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make examples || sit_fail"Building examples failed"
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}
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src_postinst() {
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# mv examples to target (not included in any make install version)
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mv $BUILDDIR/example $PREFIX
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# mv documentation to target (not included in make install)
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mv $SRCDIR/doc $PREFIX
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}
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68
packages/numlib/zoltan/3.8-parmetis-4.0.3-scotch-6.0.0
Executable file
68
packages/numlib/zoltan/3.8-parmetis-4.0.3-scotch-6.0.0
Executable file
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@ -0,0 +1,68 @@
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#!/bin/sh
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# sit class file
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#
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# Christoph Niethammer <niethammer@hlrs.de> (C) 2012
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#
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# laki sit command:
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# PREFIX_BASE=/opt COMPILER=gnu COMPILER_VERSION=4.7.3 MPI=openmpi MPI_VERSION=1.6.5 ./sit numlib/zoltan/3.8-parmetis-4.0.3-scotch-6.0.0
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#
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# hermit sit command:
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# PREFIX_BASE=/opt/hlrs COMPILER=pgi COMPILER_VERSION=13.9.0 ./sit numlib/zoltan/3.8-parmetis-4.0.3-scotch-6.0.0
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CATEGORY="numlib"
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PACKAGE="zoltan"
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VERSION="3.8"
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ADD_PACKAGES="parmetis-4.0.3-scotch-6.0.0"
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URL="http://www.labri.fr/perso/pelegrin/scotch/"
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INSTALLER="Elke Flehmig <flehmig@hlrs.de>"
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# Archive A and package name P
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A=${PACKAGE}_distrib_v${VERSION}.tar.gz
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P=Zoltan_v${VERSION}
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case $PLATFORM in
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hermit|hermit1)
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echo "Building for hermit."
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# target prefix - show compiler version before additional packages:
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PREFIX="${PREFIX_BASE}/${CATEGORY}/${PACKAGE}/${VERSION}-$COMPILER-$COMPILER_VERSION-$ADD_PACKAGES"
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SCOTCH=numlib/scotch/6.0.0
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PARMETIS=numlib/parmetis/4.0.3
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metis=numlib/metis/5.1.0
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CC_CMD=cc
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CXX_CMD=CC
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;;
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laki|*)
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echo "Building for laki."
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# target prefix - show mpi and compiler version before additional packages:
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PREFIX="${PREFIX_BASE}/${CATEGORY}/${PACKAGE}/${VERSION}-$MPI-$MPI_VERSION-$ADD_PACKAGES"
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SCOTCH=numlib/scotch/6.0.0-openmpi-1.6.5-gnu-4.7.3
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PARMETIS=numlib/parmetis/4.0.3-openmpi-1.6.5-gnu-4.7.3
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METIS=numlib/metis/5.1.0
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CC_CMD=mpicc
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CXX_CMD=mpicxx
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;;
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esac
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CONFIGURE_OPTS="CC=mpicc CXX=mpicxx --with-id-type=ullong --with-scotch --with-scotch-incdir=$PREFIX_BASE/$SCOTCH/include --with-scotch-libdir=$PREFIX_BASE/$SCOTCH/lib --with-parmetis --with-parmetis-incdir=$PREFIX_BASE/$PARMETIS/include --with-parmetis-libdir=$PREFIX_BASE/$PARMETIS/lib --with-libdirs=\"-L$PREFIX_BASE/$METIS/lib\" --with-incdirs=\"-I$PREFIX_BASE/$METIS/include\" --with-libs=\"-lscotch\""
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src_pretest() {
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sit_info "Checking zoltan ..."
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make check || sit_fail "Checking zoltan failed"
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}
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src_postinst() {
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# as examples and doc are already installed with zoltan, set a link:
|
||||
cd $PREFIX
|
||||
case $PLATFORM in
|
||||
hermit|hermit1)
|
||||
ln -s ${PREFIX_BASE}/${CATEGORY}/${PACKAGE}/${VERSION}-$COMPILER-$COMPILER_VERSION/example
|
||||
ln -s ${PREFIX_BASE}/${CATEGORY}/${PACKAGE}/${VERSION}-$COMPILER-$COMPILER_VERSION/doc
|
||||
;;
|
||||
laki|*)
|
||||
ln -s ${PREFIX_BASE}/${CATEGORY}/${PACKAGE}/${VERSION}-$MPI-$MPI_VERSION/example
|
||||
ln -s ${PREFIX_BASE}/${CATEGORY}/${PACKAGE}/${VERSION}-$MPI-$MPI_VERSION/doc
|
||||
;;
|
||||
esac
|
||||
}
|
||||
Loading…
Reference in a new issue