Commit graph

36001 commits

Author SHA1 Message Date
Harmen Stoppels
3e6e9829da
compiler.py: fix early return (#43898) 2024-04-29 08:53:27 -06:00
Gregory Becker
859745f1a9 Run audits on windows
Add debug log for external detection tests. The debug log
is used to print which test is being executed.

Skip version audit on Windows where appropriate
2024-04-29 14:13:10 +02:00
Massimiliano Culpo
ddabb8b12c
Fix concretization when installing missing compilers (#43876)
Restore the previous behavior when config:install_missing_compilers
is True. The libc of the missing compiler is inferred from the
Python process.
2024-04-29 08:20:33 +02:00
Jeff Hammond
16bba32124
add ILP64 option for BLIS (#43882)
Signed-off-by: Jeff Hammond <jeff.science@gmail.com>
2024-04-29 08:14:25 +02:00
Michael Kuhn
7d87369ead
autoconf: fix typo in m4 dependencies (#43893)
m4 1.4.8 is actually required starting with autoconf 2.72 according to
the NEWS file.
2024-04-28 18:34:12 -05:00
Adam J. Stewart
7723bd28ed
Revert "package/npm update (#43692)" (#43884)
This reverts commit 03a074ebe7.
2024-04-27 08:58:12 -06:00
Harmen Stoppels
43f3a35150
gcc: generate spec file and fix external libc default paths after install from cache (#43839)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-27 08:49:20 -06:00
Jonathon Anderson
ae9f2d4d40
containers: Add Fedora 40, 39 (#43847) 2024-04-26 20:02:04 -05:00
Huston Rogers
5a3814ff15
Miniconda3: Added Versions: 24.3.0, 24.1.2, 23.11.0, 23.9.0, 23.5.2, 23.5.1, 23.5.0, 23.3.1, 23.1.0 (#43868)
* Added Versions of miniconda3: 24.3.0, 24.1.2, 23.11.0, 23.9.0, 23.5.2, 23.5.1, 23.5.0, 23.3.1, 23.1.0

* fixed style

---------

Co-authored-by: James H. Rogers <jhrogers@spear.hpc.msstate.edu>
2024-04-26 18:58:58 -06:00
Sakib Rahman
946c539dbd
osg-ca-certs: new version osg 1.119 and igtf 1.128 (#43871)
* Update package.py to osg 1.119 and igtf 1.128

* Remove unnecessary white space

* Add missing comma

* change url to use git and use commit hash from repository instead of ssh256sum of tar.gz

* [@spackbot] updating style on behalf of rahmans1

---------

Co-authored-by: rahmans1 <rahmans1@users.noreply.github.com>
2024-04-26 18:39:12 -06:00
Robert Cohn
0037462f9e
[SOS] update license (#43864)
Auto-generated license was wrong
2024-04-26 18:45:29 +02:00
Massimiliano Culpo
e5edac4d0c
ASP-based solver: update os compatibility for macOS (#43862) 2024-04-26 18:34:46 +02:00
Jeff Hammond
3e1474dbbb
ARMCI-MPI: add new package (#43813)
Signed-off-by: Jeff Hammond <jeff.science@gmail.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-26 16:35:33 +02:00
Abhishek Yenpure
0f502bb6c3
libcatalyst: add v2.0.0 (#43804) 2024-04-26 16:27:46 +02:00
Robert Cohn
1eecbd3208
[intel-oneap-*] no redistribution (#43826) 2024-04-26 12:03:39 +00:00
Jack Morrison
6e92b9180c
Add tests-sos package + Variants to sos package (#43830)
* * Add initial tests-sos package
* Remove failing call of missing setup_compiler_environment from sos
  package
* Add several variants for sos package

* [@spackbot] updating style on behalf of jack-morrison
2024-04-26 07:26:21 -04:00
Massimiliano Culpo
ac9012da0c
spack audit externals: allow selecting platforms and checking extra attributes (#43782) 2024-04-26 12:47:17 +02:00
Mosè Giordano
e3cb4f09f0
julia: add v1.10.2 (#41151)
* julia: add v1.10.2

* julia: add patch to remove suite-sparse cuda stub files

* julia: use permalinks for patches
2024-04-26 12:44:54 +02:00
Harmen Stoppels
2e8600bb71
gcc: simplify specs file, make binutils locatable (#43861) 2024-04-26 01:30:51 -06:00
Harmen Stoppels
d946c37cbb
ldflags=* are compiler flags, not linker flags (#43820)
We run `extend spack_flags_list SPACK_LDFLAGS` for `$mode in ld|ccld`.

That's problematic, cause `ccld` needs `-Wl,--flag` whereas `ld` needs
`--flag` directly. Only `-L` and `-l` are common to compiler & linker.

In all build systems `LDFLAGS` is for the compiler not the linker, cause
any linker flag `-x` can be passed as a compiler flag `-Wl,-x`, and there
are many compiler flags that affect the linker invocation, like `-fopenmp`,
`-fuse-ld=`, `-fsanitize=` etc.

So don't pass `LDFLAGS` to the linker directly.

This way users can set `ldflags: -Wl,--allow-shlib-undefined` in compilers.yaml
to work around an issue where the linker tries to resolve the `libcuda.so.1`
stub lib which cannot be located by design in `cuda`.
2024-04-26 09:19:03 +02:00
Harmen Stoppels
47a9f0bdf7
llvm: use --gcc_install_dir in config files (#43795) 2024-04-26 09:01:02 +02:00
Alex Richert
2bf900a893
Update package.py (#43836) 2024-04-25 16:00:43 -07:00
Andrey Perestoronin
99bba0b1ce
Add intel-oneapi-mpi 2021.12.1 patch package (#43850)
* Add intel-oneapi-mpi package

* Fix style
2024-04-25 13:38:47 -06:00
Juan Miguel Carceller
a8506f9022
glew package: add ld flags when compiling with ^apple-gl (#43429) 2024-04-25 11:18:00 -07:00
Harmen Stoppels
4a40a76291
build_environment.py: expand SPACK_MANAGED_DIRS with realpath (#43844) 2024-04-25 13:33:50 +02:00
downloadico
fe9ddf22fc
spatialdata: add spatialdata package to spack (#43500) 2024-04-25 04:18:08 -07:00
Adam J. Stewart
1cae1299eb
CI: remove ML ROCm stack (#43825) 2024-04-25 12:56:59 +02:00
Adam J. Stewart
8b106416c0
py-lightning: add v2.2.3 (#43824) 2024-04-25 12:03:01 +02:00
jalcaraz
e2088b599e
[TAU Package] Updates for rocm (#43790)
* Updates for rocm

Updated for rocm@6
Added conflict between rocprofiler and roctracer.
Request either +rocprofiler or +roctracer when +rocm. In this case, it automatically builds for one, instead of displaying the message. 
Request +rocm when using either +rocprofiler or +roctracer. In this case, it automatically builds with +rocm, instead of displaying the message.

Disabled the tests. Will update them with the new test method.

* [@spackbot] updating style on behalf of jordialcaraz

---------

Co-authored-by: jordialcaraz <jordialcaraz@users.noreply.github.com>
2024-04-24 16:35:41 -07:00
Ken Raffenetti
56446685ca
mpich: add 4.2.0 release (#42687) 2024-04-24 12:33:59 -07:00
Teo
47a8d875c8
update halide versions; sync llvm (#43793) 2024-04-24 12:27:42 -07:00
Adam J. Stewart
56b2d250c1
py-keras: add v3.3.1-2 (#43798) 2024-04-24 12:23:34 -07:00
David Boehme
abbd09b4b2
Add Caliper v2.11 (#43802) 2024-04-24 12:21:56 -07:00
Rémi Lacroix
9e5fdc6614
dotnet-core-sdk: Add versions 7.0.18 and 8.0.4 (#43814) 2024-04-24 12:19:33 -07:00
Harmen Stoppels
1224a3e8cf
clang.py: detect flang-new (#43815)
If a flang-new exists, which is rather unlikely, it probably means the
user wants it as a fortran compiler.
2024-04-24 19:11:02 +02:00
Jake Koester
6c3218920f
Trilinos: update kokkos dependency (#43785)
* fix so trilinos@master uses correct kokkos (@4.3.00)

* Update var/spack/repos/builtin/packages/trilinos/package.py
2024-04-24 10:42:08 -06:00
Peter Scheibel
02cc3ea005
Add new redistribute() directive (#20185)
Some packages can't be redistributed in source or binary form. We need an explicit way to say that in a package.

This adds a `redistribute()` directive so that package authors can write, e.g.:

```python
    redistribute(source=False, binary=False)
```

You can also do this conditionally with `when=`, as with other directives, e.g.:

```python
    # 12.0 and higher are proprietary
    redistribute(source=False, binary=False, when="@12.0:")

    # can't redistribute when we depend on some proprietary dependency
    redistribute(source=False, binary=False, when="^proprietary-dependency")
```


To prevent Spack from adding either their sources or binaries to public mirrors and build caches. You can still unconditionally add things *if* you run either:
* `spack mirror create --private`
* `spack buildcache push --private`

But the default behavior for build caches is not to include non-redistributable packages in either mirrors or build caches.  We have previously done this manually for our public buildcache, but with this we can start maintaining redistributability directly in packages.

Caveats: currently the default for `redistribute()` is `True` for both `source` and `binary`, and you can only set either of them to `False` via this directive.

- [x] add `redistribute()` directive
- [x] add `redistribute_source` and `redistribute_binary` class methods to `PackageBase`
- [x] add `--private` option to `spack mirror`
- [x] add `--private` option to `spack buildcache push`
- [x] test exclusion of packages from source mirror (both as a root and as a dependency)
- [x] test exclusion of packages from binary mirror (both as a root and as a dependency)
2024-04-24 09:41:03 -07:00
John W. Parent
641ab95a31
Revert "Windows: add win-sdk/wgl externals during bootstrapping (#43459)" (#43819)
This reverts commit 9e2558bd56.
2024-04-24 18:24:28 +02:00
Adam J. Stewart
e8b76c27e4
py-matplotlib: drop test dep (#43765)
test dependencies constrains build / link type deps, so avoid that
2024-04-24 18:03:13 +02:00
Massimiliano Culpo
0dbe4d54b6
Tune default compiler preferences (#43805)
Add `%oneapi`, remove compilers that have been discontinued upstream
2024-04-24 18:00:40 +02:00
Harmen Stoppels
1eb6977049
rust: use system libs (#43797) 2024-04-24 09:46:11 -06:00
Harmen Stoppels
3f1cfdb7d7
libc: from current python process (#43787)
If there's no compiler we currently don't have any external libc for the solver.

This commit adds a fallback on libc from the current Python process, which works if it is dynamically linked.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-04-24 05:10:48 -06:00
Massimiliano Culpo
d438d7993d
nf-*-cli: fix typo in conditional (#43806)
The default runner changed on GitHub for macOS, and that
revealed a bug in a package when running audits
2024-04-24 11:30:35 +02:00
Todd Gamblin
aa0825d642
Refactor to improve spec format speed (#43712)
When looking at where we spend our time in solver setup, I noticed a fair bit of time is spent
in `Spec.format()`, and `Spec.format()` is a pretty old, slow, convoluted method.

This PR does a number of things:
- [x] Consolidate most of what was being done manually with a character loop and several
      regexes into a single regex.
- [x] Precompile regexes where we keep them 
- [x] Remove the `transform=` argument to `Spec.format()` which was only used in one 
      place in the code (modules) to uppercase env var names, but added a lot of complexity
- [x] Avoid escaping and colorizing specs unless necessary
- [x] Refactor a lot of the colorization logic to avoid unnecessary object construction
- [x] Add type hints and remove some spots in the code where we were using nonexistent
      arguments to `format()`.
- [x] Add trivial cases to `__str__` in `VariantMap` and `VersionList` to avoid sorting
- [x] Avoid calling `isinstance()` in the main loop of `Spec.format()`
- [x] Don't bother constructing a `string` representation for the result of `_prev_version`
      as it is only used for comparisons.

In my timings (on all the specs formatted in a solve of `hdf5`), this is over 2.67x faster than the 
original `format()`, and it seems to reduce setup time by around a second (for `hdf5`).
2024-04-23 10:52:15 -07:00
Greg Becker
978c20f35a
concretizer: update reuse: default to True (#41302) 2024-04-23 17:42:14 +02:00
Marc T. Henry de Frahan
d535124500
Update amr-wind package with versions (#43728) 2024-04-23 05:07:42 -06:00
Harmen Stoppels
01f61a2eba
Remove import distro from packages and docs (#43772) 2024-04-23 12:47:33 +02:00
Massimiliano Culpo
7d5e27d5e8
Do not detect a compiler without a C compiler (#43778) 2024-04-23 12:20:33 +02:00
Harmen Stoppels
d210425eef
nettle: remove openssl dep (#43770) 2024-04-23 07:44:15 +02:00
Nathalie Furmento
6be07da201
starpu: fix release 1.4.4 (#43730) 2024-04-22 15:56:23 -07:00