Commit graph

5532 commits

Author SHA1 Message Date
Jon Rood
d7ff4b8f34 Updating Trilinos with superlu variant and fixing git branch version options. (#2604) 2016-12-16 14:14:50 -08:00
Adam J. Stewart
36072c4776 [HACK] Make concretization great again! (#2590)
* Always default to +mpi

* Always default to ~X
2016-12-16 10:49:02 -08:00
Massimiliano Culpo
87c9b01033 openblas: derives from MakefilePackage (#2488)
* MakefilePackage: changed build_args and install_args for consistency with #2464
openblas: derives from MakefilePackage

* MakefilePackage: changed default edit behavior
2016-12-15 10:15:52 -08:00
Massimiliano Culpo
f9ca5b9f27 go: see #2567, temporary fix (#2588) 2016-12-15 09:12:33 -08:00
Todd Gamblin
6971918c27 Add GNU patch to Spack. (#2598) 2016-12-15 01:35:45 -08:00
Mario Melara
32cecf55ee Fix target for compiler on CNL operating systems (#2580)
Changes any to a string to avoid <built-in function any> being
incorrectly added to target in compilers.yaml.
2016-12-14 14:37:14 -08:00
Jean-Paul Pelteret
8816cdea9e Blacklist flex 2.6.2 by commenting out package version (#2571)
Fixes #2554
2016-12-14 14:34:55 -08:00
Adam J. Stewart
1ac4ae0b41 Make unzip quiet (#2593) 2016-12-14 14:24:02 -08:00
George Hartzell
f487102c0c Update texlive digest (#2591)
Texlive is *live*, they update the contents of their tarball on a whim.

Here's the current one.
2016-12-14 11:55:48 -08:00
Kim Serradell
c02de564e4 New package py-cdo (#2569)
* Add python cdo support

* Correct pypi url

* Corrected a blanck space that was failing CI

* Corrected url that was failing CI

* Following @alalazo indications, Write this line wrapping it around 80 chars to pass Travis

* Added cdo package depency
2016-12-13 14:36:06 -08:00
Mario Melara
01230a62d4 Change attribute to match ArchSpec refactor (#2579)
Fixes issue #2578
2016-12-13 13:58:03 -08:00
Gregory Lee
392ed4f0cc Merge pull request #2506 from skosukhin/pr_python
A couple of updates for python package.
2016-12-13 13:56:15 -08:00
Ben Morgan
fb809189d3 Better cxx11/14/17 flags for GNU/Clang/Intel (#2539)
* Better cxx11/14 flags for GNU/Clang/Intel

- GCC 4.8 only supports -std=c++1y for C++14
- Use CMake's rules for AppleClang to set cxx11 and cxx14 flags based on
  Apple Xcode/LLVM version
- Use CMake's rules for Intel to add support for cxx14 flags based on
  Intel version.

* Add cxx17_flag property

Implement property in compiler for c++17 as per those for c++11/14.
Add concrete support for GNU/Clang:

- Return -std=c++1z for GCC 5 and above per GCC documentation
- Return -std=c++1z for Clang 3.5 and above per Clang documentation
- Return -std=c++1z for Apple LLVM 6.1 and above per CMake's rules
2016-12-13 13:15:10 -08:00
amklinv
f613445eb2 Added support for xSDKTrilinos package (#2201)
* Added support for xSDKTrilinos package

* Updated xsdktrilinos/package.py for PR review

* Added trilinos version # reqs to xsdktrilinos

* xsdktrilinos now uses CMakePackage

* Cleaned up xsdktrilinos/package.py

* Removed unused cxxflags from xsdktrilinos

* Removed unused sys import from xsdktrilinos
2016-12-13 11:50:10 -08:00
Elizabeth Fischer
4f9e548bf6 Update spack setup and spack graph to be consistent with recent refactoring (#2317)
* Update `spack setup` and `spack graph` to be consistent with c557e765 and 9347f869.  Fixes #2316.

* Added another "fix" necessary to make `spack setup` work.

* Added another "fix" necessary to make `spack setup` work. (reverted from commit 7f0d3ecb38c97ec00491d7cd66b4266e3018b1ca)
2016-12-13 10:48:40 -08:00
Denis Davydov
d855403546 likwid: remote root from INSTALL_CHOWN (#2564) 2016-12-13 10:46:31 -08:00
Denis Davydov
fab9af7081 slepc/petsc: fix python dependency (#2560) 2016-12-13 01:32:42 -08:00
Todd Gamblin
8496d8ff77 Add a test to ensure package names have the right case. (#2562) 2016-12-13 01:23:40 -08:00
Sergey Kosukhin
d8c4418952 Updated python: refactoring and warning messages. 2016-12-13 08:36:56 +01:00
Sergey Kosukhin
3ba88a7509 Updated python: pass LDSHARED to dependants' setup scripts. 2016-12-13 08:36:56 +01:00
Sergey Kosukhin
ec855df071 Updated python: account for lib64 when filtering compilers. 2016-12-13 08:36:56 +01:00
Sergey Kosukhin
58cb2cc2af Updated python: reformat code. 2016-12-13 08:36:56 +01:00
Adam J. Stewart
9f71382912 Add missing bzip2 dependency to freetype (#2536)
* Add freetype dependency on bzip2

* Switch package with an install method for the docs
2016-12-12 14:20:36 -08:00
Jean-Paul Pelteret
6698650679 Doxygen: Add new version (#2561) 2016-12-12 13:45:29 -08:00
Sergey Kosukhin
8f28c9009e Set parent process's input stream inside the build process. (#2535) 2016-12-12 11:55:13 -08:00
Denis Davydov
eb645a8e46 p4est: remove unneded lua dependency (#2559) 2016-12-12 09:51:58 -08:00
Todd Gamblin
d3d87ea190 Add documentation for repositories and namespaces. (#2474)
* Add documentation for repositories and namespaces.

* Update and extend repository documentation per review.

- Also add `-N` argument for `spack spec`
2016-12-12 00:54:20 -08:00
Javier
641db8b9bd New package - r-xgboost (#2493) 2016-12-11 11:49:33 -08:00
Denis Davydov
c8a89d84b5 atlas: fix lapack stage path (#2371)
* atlas: fix lapack stage path

* atlas: add a few links to other package managers
2016-12-11 11:48:23 -08:00
Denis Davydov
d8fd5835b6 rename: add new package (#2486) 2016-12-11 11:44:30 -08:00
Stephen McDowell
7e96b09e63 [docs] missin .. code-block:: console in Spack 101 (#2530)
The advanced [Uninstalling Packages](spack.readthedocs.io/en/latest/tutorial_sc16_spack_basics.html#uninstalling-packages) via hash has a couple missing `.. code-block:: console` directives ;)

I have no idea what branch to direct this to though...
2016-12-11 11:40:36 -08:00
Denis Davydov
62dedc80b1 likwid: add todo (#2531)
* likwid: add todo

* liwkid: add a note on hwloc dependency
2016-12-11 11:39:56 -08:00
Denis Davydov
6475937fc2 numdiff: fix dependency type on macOS (#2538) 2016-12-11 11:38:40 -08:00
Sergey Kosukhin
42dbd4f855 Updated cmor: corrected way to set constraints for the extendee. (#2543) 2016-12-11 11:37:00 -08:00
Jean-Paul Pelteret
70f1e92951 Update Adol-C package (#2556)
Rename developer version, add new version, and make patch version
specific.
2016-12-11 11:35:57 -08:00
Denis Davydov
1570f90fde clang: do xcode mockup iff requested by a package (#2544)
* clang: do xcode mockup iff requested by a package

* add a note

* add pkg to setup_custom_environment() and decide whether or not to use mockup XCode there based on the package
2016-12-10 16:23:39 -08:00
Stephen McDowell
b03881d1bb Eigen 3.3.1 is latest stable version. (#2551)
Main page states [3.3.1 is latest stable](http://eigen.tuxfamily.org/index.php?title=Main_Page).
2016-12-10 16:23:20 -08:00
Stephen McDowell
3887d9b2bc Scotch 6.0.4 is available. (#2552)
Source project page states [6.0.4 is latest stable](http://scotch.gforge.inria.fr/)
2016-12-10 16:23:03 -08:00
Barry Smith
3a1e191b72 Implementation of spack file for Pflotran (#2444)
Supports installing both a "known version" of PETSc/PFlotran that works and
the develop/master branches of both packages

Funded-by: IDEAS
Project: IDEAS/xSDK
Time: 4 hour
2016-12-10 16:22:36 -08:00
Tom Scogland
943c007fb5 update flux dependencies and package (#2541)
* update flux dependencies and package

* refinements from @adamjstewart

* fix flux document generation

The docbook-xsl package has been added, and correctly configures catalog
files to generate documentation correctly with asciidoc.
2016-12-09 17:19:53 -08:00
Denis Davydov
d7e9134d42 astyle: do not set user/group when installing on macOS (#2542)
* astyle: do not set user/group when installing on macOS

* astyle: add new version
2016-12-09 10:58:08 -08:00
Denis Davydov
4d0ea423fb petsc: explicitly disable X11 (#2533)
otherwise petsc may pickup libX11 on login nodes during config/build,
but libX11 may not be available on computation nodes.
2016-12-09 08:43:38 -08:00
becker33
3f8613ae42 Make targets an attribute of compilers (#2500)
* Make targets an attribute of compilers, similar to OS. Allows users to use `spack compiler find` to add compilers for the same platform/os but different targets when spack is installed on a file system mounted on machines with different targets.

* Changed get_compilers() method to treat old compilers with no target as target='any'

* flake8 changes

* Address change requests for comments/code clarity
2016-12-08 22:40:26 -08:00
Sergey Kosukhin
10591fb87f Json loader now returns str objects instead of unicode. (#2524) 2016-12-08 13:42:18 -08:00
Sergey Kosukhin
607f4e7b81 Added packages: cmor and uuid. (#2527)
* Added package 'uuid'.

* Added package 'cmor'.

* Updated 'cmor' and 'uuid': docstring formatting.
2016-12-08 12:09:21 -08:00
scheibelp
065e3d7c0d Revert to-string for CNL operating system (#2526) 2016-12-08 11:41:34 -08:00
Todd Gamblin
be300eb6d5 Add support for parsing R-XML URL versions. (#2525)
* Add support for parsing R-XML URL versions.

* Better url-parse debug output.

- just print the debug stuff all the time.

* fix R-XML versions.
2016-12-08 11:08:58 -08:00
George Hartzell
65df417444 Update emacs: current release, use our x11 bits (#2052)
* Update emacs: current release, use our x11 bits

Add checksum for 25.1 release.

Rework the X support:

- use Spack's X11 bits
- add ability to specify an X toolkit (gtk or athena, default is gtk).
- change toolkit names to align with Emacs' configure usage.

* PEP8 cleanups.

* glib dependency should not be type=build

I'd like to blame that on a typo, but it's a few too many characters
for that to be viable.  I'm not sure what I was thinking.

* Pass X variant down: emacs->pango->cairo

* X variants default to False, warn on bad toolkit

Change the X variants for emacs, pango and cairo to default to False.

Check that the toolkit is a valid choice and give a reasonable error if
not.

* Fix flake8 issue, reword warning text

* gtkplus needs to use +X variant for pango to work

In order for a useful variant of pango to be built into the spec I
needed to make the dependency on gtkplus explicitly specify it's X
variant.  The X variant is the default, but that wasn't enough to make
it happy.  Since it's happiness is the most imporant thing in the
world, this change! :)
2016-12-08 09:43:29 -08:00
Adam J. Stewart
ed8060abe0 Scotch fails to build with latest flex (#2523) 2016-12-08 09:37:18 -08:00
Denis Davydov
cab8788f53 dealii: remove dependencies which are not needed (#2522) 2016-12-08 07:29:22 -08:00