Commit graph

15357 commits

Author SHA1 Message Date
Amjad Kotobi
31eff3578f
cmake added version 3.17.1 (#16326) 2020-04-27 13:19:10 -05:00
Benjamin Tovar
505a511af4
update cctools to version 7.1.3 (#16324) 2020-04-27 13:18:44 -05:00
iarspider
a277b96b39
Make mariadb provide mysql-client... (#16322)
... as well as mariadb. Needed for ROOT.
2020-04-27 11:01:48 -05:00
vvolkl
77812845b8
update podio version formatting (#16321)
* update podio version formatting

* [podio] formatting fixes
2020-04-27 11:01:09 -05:00
vvolkl
eda886f627
[dd4hep] url and other fixes (#16320) 2020-04-27 11:00:10 -05:00
Toyohisa Kameyama
d59f7398a3
MODYLAS: New package (#16317) 2020-04-27 10:57:14 -05:00
darmac
5938499be7
Add new package: stinger (#16316) 2020-04-27 10:55:07 -05:00
darmac
81b5475f8e
Add new package: smartdenovo (#16310) 2020-04-27 09:55:35 -05:00
Massimiliano Culpo
fe46919e19
tulip: added new package at v5.4.0 (#16319)
closes #3479

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>
2020-04-27 09:54:49 -05:00
George Hartzell
3f54e73025
singularity: better info re post-install step (#16311)
The singularity info should actually suggest where you might find the info about the post-install steps.

Co-authored-by: george.hartzell <george.hartzell@sana.com>
2020-04-27 13:41:04 +02:00
Toyohisa Kameyama
0477f829a2
xabclib: added package at v1.03 (#16271) 2020-04-27 13:33:28 +02:00
asmaahassan90
35717b556b
spglib: added libs property (#16318) 2020-04-27 13:26:10 +02:00
Christoph Junghans
3ea21fef4b
votca-csg: Block gromacs@2020 and newer (#16315) 2020-04-27 04:57:26 -06:00
Massimiliano Culpo
6b648c6e89
Improve the coverage of spack.relocate (#15654)
This PR introduces trivial refactoring in:
- `get_existing_elf_rpaths`
- `get_relative_elf_rpaths`
- `get_normalized_elf_rpaths`
- `set_placeholder`

mainly to be more consistent with practices used in other 
parts of the code and to simplify functions locally. It also 
adds or reworks unit tests for these functions and extends 
their docstrings.

Co-authored-by: Patrick Gartung <gartung@fnal.gov>
Co-authored-by: Peter J. Scheibel <scheibel1@llnl.gov>
2020-04-27 12:17:32 +02:00
Toyohisa Kameyama
ca4de491ba
ppOpen-APPL/AMR-FDM: New package (#16199)
* ppOpen-APPL/AMR-FDM: New package

* separate build and install.

* Fix description.
2020-04-26 22:09:06 -05:00
Axel Huebl
4f3cc19ec7
qt: fix macOS w/ AppleClang (mesa libs) (#16302)
Building the `py-jupyter` stack on macOS with AppleClang breaks on
the `py-qtconsole` -> `py-qtconsole` -> `qt +opengl` package build
environment setup with:
```
 ==> Error: AttributeError: Query of package 'mesa' for 'libs' failed
 ...
 ==> Error: Failed to install qt due to ChildError: AttributeError: Query of package 'mesa' for 'libs' failed
```

This tries to add more library targets build by `mesa` to avoid this.
2020-04-26 17:07:13 -07:00
Axel Huebl
199ce66a3c
libpciaccess: mirror (#16312)
Support mirrors for libpciaccess downloads.
2020-04-26 17:06:37 -07:00
Axel Huebl
af7e323f67
libbsd: mirror (#16313)
Add a mirror for `libbsd` to improve fetch stability.
libbsd.freedesktop.org sometimes failes in my nightly CI/CD scripts.
2020-04-26 17:06:27 -07:00
Axel Huebl
e8efeda14a
py-profilehooks (new package) (#16305)
Adds the py-profilehooks package.
2020-04-26 17:08:21 -05:00
Axel Huebl
f202023876
py-blosc (new package) (#16307)
Add the py-blosc python package.
2020-04-26 11:46:40 -05:00
Axel Huebl
31e8d646af
py-h5py: master (new version) (#16306)
Add the `master` branch of h5py as a version.
2020-04-26 11:45:04 -05:00
Adam J. Stewart
63a0647282
PyTorch: disable XNNPACK build (#16304) 2020-04-26 11:29:52 -05:00
Axel Huebl
75042c381c
LLVM lldb 10.0: Python Link Dependency (#16299)
* LLVM: Python Dependency

Effort to expose the linked python library when building LLVM.
This might fix the forward propagation of libintl that comes
with the static python library build on darwin.

* LLDB Py: Remove Ignored Old Flags

Changed in LLVM 10.0+
2020-04-25 21:36:08 -07:00
Adam J. Stewart
4cd537f6c7
py-pyyaml: add new version and variant (#16301) 2020-04-25 15:43:14 -05:00
Adam J. Stewart
b5be99cdb7
libyaml: add new version (#16300) 2020-04-25 15:42:40 -05:00
Sajid Ali
9b0e4cd20b
ucx : add version, modify variants (#16252)
* fixes

* remove extra newline
2020-04-25 12:39:33 -05:00
Adam J. Stewart
9bd0b0fbe1
py-spacy: add new package (#16293) 2020-04-25 10:35:57 -05:00
Jonathon Anderson
b796d2736c
Version bump: jdk 14 (#15821) 2020-04-25 10:35:33 -05:00
Adam J. Stewart
5fce2ac96b
py-thinc: add new package (#16295) 2020-04-24 23:50:56 -05:00
Joseph Ciurej
914f380bb6
Improved the accuracy of the dependencies for the 'visit' package. (#16297)
Added a fix for the 'visit' package when building variant '@3%gcc'.
2020-04-24 21:25:48 -05:00
Adam J. Stewart
b5bf816577
py-preshed: add new package (#16292) 2020-04-24 21:24:33 -05:00
Adam J. Stewart
d0ccab7d17
py-srsly: add new package (#16294) 2020-04-24 20:01:22 -05:00
Adam J. Stewart
dbd0fe8190
py-wasabi: add new package (#16296) 2020-04-24 20:01:09 -05:00
Adam J. Stewart
7a2f47d181
py-plac: add new package (#16291) 2020-04-24 20:00:55 -05:00
Adam J. Stewart
510d8821e5
py-nltk: add new package (#16290) 2020-04-24 20:00:42 -05:00
Adam J. Stewart
0ee023d29f
py-murmurhash: add new package (#16289) 2020-04-24 20:00:28 -05:00
Adam J. Stewart
ab87617d55
py-cymem: add new package (#16288) 2020-04-24 20:00:15 -05:00
Adam J. Stewart
3153610bb8
py-catalogue: add new package (#16287) 2020-04-24 20:00:02 -05:00
Adam J. Stewart
441c16bafb
py-blis: add new package (#16286) 2020-04-24 19:59:48 -05:00
Adam J. Stewart
89914f521e
py-wheel: add new version (#16285) 2020-04-24 19:59:30 -05:00
Adam J. Stewart
0606091775
py-tqdm: add new version (#16284) 2020-04-24 19:59:15 -05:00
Axel Huebl
5828a8f7e6
spack env: activate note (#16279)
print a note on how to activate a newly created environment
2020-04-24 13:24:52 -07:00
Toyohisa Kameyama
051d0d935a
Chainer: New Package. (#16251)
* Chainer: New Package.

* 1. Add maintainers.
2. fix dependency.
3. Add typing-extention@3.6.6 and fix version dependency.

* afixed dependency.

* remove python dependency for version 6.
2020-04-24 11:56:10 -05:00
Jeffrey Salmond
95a03f6759
Add vscode files to gitignore (#16270) 2020-04-24 09:31:03 +02:00
Todd Gamblin
c6ada206af
tests: each mock package now has its own class (#16157)
Packages in Spack are classes, and we need to be able to execute class
methods on mock packages.  The previous design used instances of a single
MockPackage class; this version gives each package its own class that can
spider depenencies.  This allows us to implement class methods like
`possible_dependencies()` on mock packages.

This design change moves mock package creation into the
`MockPackageMultiRepo`, and mock packages now *must* be created from a
repo.  This is required for us to mock `possible_dependencies()`, which
needs to be able to get dependency packages from the package repo.

Changes include:

* `MockPackage` is now `MockPackageBase`
* `MockPackageBase` instances must now be created with
  `MockPackageMultiRepo.add_package()`
* add `possible_dependencies()` method to `MockPackageBase`
* refactor tests to use new code structure
* move package mocking infrastructure into `spack.util.mock_package`,
  as it's becoming a more sophisticated class and it gets lots in `conftest.py`
2020-04-23 18:21:49 -07:00
Adam J. Stewart
433a0b243f
oneDNN: add new version (#16267) 2020-04-23 19:50:22 -05:00
Jeffrey Salmond
9b3a0355bb
add fontconfig as vim dependency (#16268) 2020-04-23 19:50:05 -05:00
Christoph Junghans
a844467c25
eospac: prefer 6.4.0 (#16266) 2020-04-23 15:53:51 -06:00
Todd Gamblin
0c0f11caf6
spack info: allow variants section to be as wide as the terminal (#16254)
The variants table in `spack info` is cramped, as the *widest* it can be
is 80 columns.  And that's actually only sort of true -- the padding
calculation is off, so it still wraps on terminals of size 80 because it
comes out *slightly* wider.

This change looks at the terminal size and calculates the width of the
description column based on it.  On larger terminals, the output looks
much nicer, and on small terminals, the output no longer wraps.

Here's an example  for `spack info qmcpack` with 110 columns.

Before:
    Name [Default]          Allowed values          Description
    ====================    ====================    ==============================

    afqmc [off]             on, off                 Install with AFQMC support.
                                                    NOTE that if used in
                                                    combination with CUDA, only
                                                    AFQMC will have CUDA.
    build_type [Release]    Debug, Release,         The build type to build
                            RelWithDebInfo
    complex [off]           on, off                 Build the complex (general
                                                    twist/k-point) version
    cuda [off]              on, off                 Build with CUDA

After:
    Name [Default]          Allowed values          Description
    ====================    ====================    ========================================================

    afqmc [off]             on, off                 Install with AFQMC support. NOTE that if used in
                                                    combination with CUDA, only AFQMC will have CUDA.
    build_type [Release]    Debug, Release,         The build type to build
                            RelWithDebInfo
    complex [off]           on, off                 Build the complex (general twist/k-point) version
    cuda [off]              on, off                 Build with CUDA
2020-04-23 12:14:40 -07:00
Mark W. Krentel
686f0e21de
libunwind: add 1.4.0 release and 1.5 stable branch (#16261) 2020-04-23 12:34:19 -05:00