Commit graph

8844 commits

Author SHA1 Message Date
Adam J. Stewart
fea315e274
Add py-bintrees package (#12818) 2019-09-16 13:07:21 -05:00
Adam J. Stewart
0885615e22
Add py-lscsoft-glue package (#12821) 2019-09-16 13:06:59 -05:00
Adam J. Stewart
3b11dfdca0
Add py-jplephem package (#12819) 2019-09-16 13:06:33 -05:00
Adam J. Stewart
947413236b
Add py-ligo-segments package (#12820) 2019-09-16 13:06:09 -05:00
Adam J. Stewart
4cce23d1d3
Add py-pyopenssl package (#12824) 2019-09-16 13:05:37 -05:00
Adam J. Stewart
0d64b12c58
Add py-semantic-version package (#12825) 2019-09-16 13:05:12 -05:00
Adam J. Stewart
b8481d7913
Add py-sortedcontainers package (#12826) 2019-09-16 13:04:50 -05:00
Adam J. Stewart
09e3d6514b
Add py-weave package (#12828) 2019-09-16 12:57:18 -05:00
Adam J. Stewart
321c857d4c
Add py-soupsieve package (#12827) 2019-09-16 12:56:53 -05:00
Adam J. Stewart
e3969e33fd
Relax Python version constraints on py-html5lib (#12811) 2019-09-16 12:56:21 -05:00
Chuck Atkins
76b79c125a
xdmf3: new package (#12778) 2019-09-16 12:02:07 -04:00
Ruben Di Battista
9675db4e7f qt: Fix build with GCC9 for version 4 (#12832)
* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name
2019-09-14 14:00:46 -05:00
Toyohisa Kameyama
c26a3ff894 flang: build on arm. (#12808) 2019-09-14 11:15:06 -05:00
Adam J. Stewart
5f18696169 py-bleach package: add version 3.1.0 (#12814) 2019-09-13 19:15:54 -07:00
Adam J. Stewart
3a47a6196f py-cython package: fix --test (#12813)
Fix bug in string conversion of "make_jobs"
2019-09-13 19:15:06 -07:00
Adam J. Stewart
a3c6b07c96 py-emcee package: add version 2.2.1 (#12812) 2019-09-13 19:13:45 -07:00
Adam J. Stewart
f9b8442e1b wcslib package: add version 6.4 (#12810) 2019-09-13 19:09:54 -07:00
Glenn P Johnson
6937416a65 Add diamond dependency 2019-09-13 19:08:57 -07:00
Glenn P Johnson
09047d76e9 Update braker package
- add version 2.1.4
- change url to github
- add perl dependencies
- new version has a new source layout
- filter shebang to use spack perl
2019-09-13 19:08:57 -07:00
Glenn P Johnson
b046ee20f5 Fixes for augustus package
- add missing perl dependency
- only filter Makefile if referred to dependency is in the spec
- rewrite the shebang line of scripts to use spack perl
- remove tabix dependency as tabix and bgzip are part of htslib
2019-09-13 19:07:35 -07:00
Glenn P Johnson
2256890d4e Update genemark-et package
- add version 4.46
- add missing perl dependencies
- new version has different source layout
- filter shebang to use spack perl
2019-09-13 19:05:02 -07:00
Sinan
6df57bb2d0 New package: py-pykwalify (#12540) 2019-09-13 12:22:08 -07:00
Frédéric Simonis
3f06d5c12a preCICE: added versions 1.6.0 and 1.6.1 (#12809) 2019-09-13 16:04:50 +02:00
Glenn Johnson
3cc95c6427 diamond: added version 0.9.25 (#12805) 2019-09-13 07:37:52 +02:00
Sinan
48e9090252 New package: py-ruamel-yaml (#12543) 2019-09-12 15:46:39 -07:00
Owen Solberg
78f3f4c309 Singularity package: add version 3.4.0 (#12785)
This version in combination with the included patch can install
without root.
2019-09-12 13:45:00 -07:00
Owen Solberg
6608876747 New package: cryptsetup (#12762)
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-12 13:41:53 -07:00
Sinan
b95b4bb9e0 add compilation option to sqlite (#12794)
* add compilation option to sqlite

* rename variant

* fix bug

* re-rename variant
2019-09-12 15:31:03 -05:00
ktsai7
96ba5a1265 Update legion gasnet config (#12523) 2019-09-12 13:46:37 -06:00
Simo Tuomisto
5a6d060b52 py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795) 2019-09-12 09:36:45 -05:00
brietzke
3269f712f0 fgsl: new version + fix for recent spack commit (#12790) 2019-09-11 20:15:50 -05:00
Chris Green
e727e79b73 jsoncpp: new versions, support cxxstd variant. (#12780) 2019-09-11 12:32:49 +02:00
Owen Solberg
e3d06dc0d7 create package popt (#12783) 2019-09-10 21:33:33 -05:00
Jonas Lippuner
97641aab63 fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784) 2019-09-10 19:39:42 -05:00
Hironori-Yamaji
9962696128 openmx: new package (#12768)
* openmx: new package

* openmx: use copy method
2019-09-10 12:59:13 -05:00
Janne Blomqvist
3f1762bcc2 cuda: New version 10.1.243 (#12777)
* cuda: New version 10.1.243

Adds CUDA 10.1.243. The installer command-line arguments have slightly
changed, hence in the install method the version needs to be inspected
in order to give the correct arguments for the new installer.

* cuda: Combine common command-line arguments

The CUDA 10.1+ installer has slightly different command-line arguments
than previous versions.  Keep the common parts together and only split
where they are different.

* Make flake8 happy
2019-09-10 10:52:55 -07:00
Owen Solberg
c23bea80bd py-atropos: new package (#12745)
* create new package py-atropos

* remove whitespace

* make tqdm and pysam dependencies optional, exposed as variants
2019-09-10 12:18:31 -05:00
Hironori-Yamaji
fefd998509 ccs-qcd: disable parallel builds (#12775) 2019-09-10 14:19:09 +02:00
xfzhao
c30f9c6833 update bbmap (#12721)
* update bbmap

* remove one extra comment line
2019-09-09 12:55:06 -05:00
Michael Kuhn
62f0286f5e Fix pkgconfig dependencies (#12714)
pkgconfig is the virtual dependency, pkg-config is an implementation.
2019-09-09 12:54:46 -05:00
brietzke
4de32033b1 Update py-bokeh: new version & dependencies" (#12724)
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* update py-bokeh: new version & dependencies

* trigger travis-ci

* adjust python dependency-type to br
2019-09-09 11:59:27 -05:00
brietzke
155a667b7a New package: py-fsspec (#12725)
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* new package: py-fsspec: add package.py

* trigger travis-ci

* adjust python dependency-type to br
2019-09-09 11:58:49 -05:00
Dan Lipsa
1a8c572316 Paraview version (#12766)
* Update paraview

* Paraview 5.6.2 provides only .xz (no .gz)

* Add list_url and list_depth
2019-09-09 11:57:53 -05:00
viniciusvgp
7849dbb529 binutils: fix undefined symbol libintl_dgettext (#12770) 2019-09-09 11:05:04 -05:00
Greg Sjaardema
db1fb16840 CGNS: Add setting of RPATH on Darwin (#9984)
* CGNS: Add setting of RPATH on Darwin

This should go in the CGNS CMakeLists.txt, but it isn't there yet and won't be in previous versions, so best to handle it here.  
If building on darwin/MacOSX, need to set the RPATH so applications can find shared library correctly.

* Restrict MACOSX_RPATH setting

This has now been added to the CGNS distribution, so the setting of `CMAKE_MACOSX_RPATH` should be restricted to current and previous releases and not upcoming releases.
2019-09-08 17:14:56 -05:00
Geoffrey Oxberry
983e6b4a4a fribidi@1.0.5: new package (#12386) 2019-09-08 17:10:39 -05:00
Sinan
4a18d40a66 new package: py-iniparse (#12638)
* new package: py-iniparse

* add git version supporting python3

* redo python dependency
2019-09-08 17:09:24 -05:00
Sinan
d66caf7a66 Package/py configobj (#12639)
* new package: py-configojb

* add version 4.7.2

* improve dependencies

* fix url for versions > 5.0.0

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* use format to create url strings

* fix typo

* improve style

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-08 17:08:59 -05:00
Owen Solberg
2ad6bed77c for fakeroot support, add "shadow" dependency (#12754)
* adding checksum for singularity 3.4, adding dep for shadow

* make v3.4 a TODO for now -- needs cryptsetup package first
2019-09-08 13:55:15 -05:00
Adam J. Stewart
bff667051b
Fix PyQt installation (#12479)
* Fix PyQt installation

* Switch dependency type

* Replace SIP dependency with resource

* Relax py-pyqt4 Qt dependency
2019-09-08 10:48:50 -05:00