Commit graph

24776 commits

Author SHA1 Message Date
Nils Leif Fischer
38fee7e0da
libogg: patch stdint include, add v1.3.5 (#28332)
Backport a patch for v1.3.4 that fixes an unsigned typedef problem
on macOS: https://github.com/xiph/ogg/pull/64

Also add v1.3.5 that has this issue fixed.
2022-01-12 09:17:52 -07:00
Andrew W Elble
b3043cae8f
grace: workaround for buffer overflows (#28232)
spack paths can be long and this overflows (at least) these buffers
inside of the bundled T1lib inside of the grace distribution, leading
to crashes on startup.
2022-01-12 17:14:37 +01:00
kwryankrattiger
6c9b781e6e
ECP-DAV: Propagate adios2 variant to paraview (#26747)
Depends on #26728 and #26175
2022-01-12 11:14:12 -05:00
Matthieu Dorier
04b9d87fca
gptune: fix build by setting compilers to mpi wrappers (#28235) 2022-01-12 17:13:37 +01:00
Harmen Stoppels
868eaeb70e
lmod: add v8.6.5 (#28353) 2022-01-12 08:26:43 -07:00
Nils Leif Fischer
0e1e705e15
charmpp: disable pre-7.0.0 macOS builds with clang@7: (#28221)
Charm++ versions below 7.0.0 have build issues on macOS, mainly due to the
pre-7.0.0 `VERSION` file conflicting with other version files on the
system: https://github.com/UIUC-PPL/charm/issues/2844. Specifically, it
conflicts with LLVM's `<version>` header that was added in llvm@7.0.0 to
comply with the C++20 standard:
https://en.cppreference.com/w/cpp/header/version. The conflict only occurs
on case-insensitive file systems, as typically used on macOS machines.
2022-01-12 15:53:49 +01:00
Adam J. Stewart
faaf38ca7d
py-torch: use conditional variants (#28242) 2022-01-12 15:52:16 +01:00
Todd Gamblin
54d741ba54 unparser: handle package-level loops, if statements, and with blocks
Many packages implement logic at the class level to handle complex dependencies and
conflicts. Others have started using `with when("@1.0"):` blocks since we added that
capability. The loops and other control logic can cause some pure directive logic not to
be removed by our package hashing logic -- and in many cases that's a lot of code that
will cause unnecessary rebuilds.

This commit changes the unparser so that it will descend into these blocks. Specifically:

  1. Descend into loops, if statements, and with blocks at the class level.
  2. Don't look inside function definitions (in or outside a class).
  3. Don't look at nested class definitions (they don't have directives)
  4. Add logic to *remove* empty loops/with blocks/if statements if all directives
     in them were removed.

This allows our package hash to ignore a lot of pure metadata that it was not ignoring
before, and makes it less sensitive.

In addition, we add `maintainers` and `tags` to the list of metadata attributes that
Spack should remove from packages when constructing canonoical source for a package
hash.

- [x] Make unparser handle if/for/while/with at class level.
- [x] Add tests for control logic removal.
- [x] Add a test to ensure that all packages are not only unparseable, but also
      that their canonical source is still compilable. This is a test for
      our control logic removal.
- [x] Add another unparse test package that has complex logic.
2022-01-12 06:14:18 -08:00
Todd Gamblin
101f080138 unparser: add unparser unit tests
These are the unit tests from astunparse, converted to pytest, with a few backports from
upstream cpython. These should hopefully keep `unparser.py` well covered as we change it.
2022-01-12 06:14:18 -08:00
Todd Gamblin
4d7226832d unparser: rename t to node to mirror upstream
These refactors have happened in upstream `ast.unparse()`
2022-01-12 06:14:18 -08:00
Todd Gamblin
0370324f1f unparser: rename _Class() methods to visit_Class() to mirror upstream
These are refactors that have happened in upstream `ast.unparse()`
2022-01-12 06:14:18 -08:00
Todd Gamblin
ec16c2d7c2 unparser: do a better job of roundtripping strings
Handle complex f-strings.  Backport of:

    a993e901eb#
2022-01-12 06:14:18 -08:00
Todd Gamblin
e9612696fd unparser: treat print(a, b, c) and print((a, b, c)) the same
We can't tell `print(a, b, c)` and `print((a, b, c))` apart -- both of these expressions
generate different ASTs in Python 2 and Python 3.  However, we can decide that we don't
care.  This commit treats both of them the same when `py_ver_consistent` is set with
`unparse()`.

This means that the package hash won't notice changes from printing a tuple to printing
multiple values, but we don't care, because this is extremely unlikely to affect the build.
More than likely this is just an error message for the user of the package.

- [x] treat `print(a, b, c)` and `print((a, b, c))` the same in py2 and py3
- [x] add another package parsing test -- legion -- that exercises this feature
2022-01-12 06:14:18 -08:00
Todd Gamblin
a18a0e7a47 commands: add spack pkg source and spack pkg hash
To make it easier to see how package hashes change and how they are computed, add two
commands:

* `spack pkg source <spec>`: dumps source code for a package to the terminal

* `spack pkg source --canonical <spec>`: dumps canonicalized source code for a
   package to the terminal. It strips comments, directives, and known-unused
   multimethods from the package. It is used to generate package hashes.

* `spack pkg hash <spec>`: This gives the package hash for a particular spec.
  It is generated from the canonical source code for the spec.

- [x] `add spack pkg source` and `spack pkg hash`
- [x] add tests
- [x] fix bug in multimethod resolution with boolean `@when` values

Co-authored-by: Greg Becker <becker33@llnl.gov>
2022-01-12 06:14:18 -08:00
Todd Gamblin
106ae7abe6 package_hash: switch to using canonical source instead of AST repr
We are planning to switch to using full hashes for Spack specs, which means that the
package hash will be included in the deployment descriptor. This means we need a more
robust package hash than simply dumping the `repr` of the AST.

The AST repr that we previously used for package content is unreliable because it can
vary between python versions (Python's AST actually changes fairly frequently).

- [x] change `package_hash`, `package_ast`, and `canonical_source` to accept a string for
      alternate source instead of a filename.
- [x] consolidate package hash tests in `test/util/package_hash.py`.
- [x] remove old `package_content` method.
- [x] make `package_hash` do what `canonical_source_hash` was doing before.
- [x] modify `content_hash` in `package.py` to use the new `package_hash` function.

Co-authored-by: Danny McClanahan <1305167+cosmicexplorer@users.noreply.github.com>
2022-01-12 06:14:18 -08:00
Todd Gamblin
39afe946a0 unparser: Don't omit parenthesis when unparsing a slice
Backport of
  c102a14825

Includes support for Python 2.
2022-01-12 06:14:18 -08:00
Todd Gamblin
0776c3b4d6 unparser: Don't put unnecessary parentheses on class declarations
Backport of
* 25160cdc47
2022-01-12 06:14:18 -08:00
Todd Gamblin
ff5e73d6eb package_hash: add test to ensure that every package in Spack can be unparsed
- [x] add option to canonical source to *not* filter multimethods
- [x] add test to unparse every package in builtin
2022-01-12 06:14:18 -08:00
Todd Gamblin
b6dde510bd package_hash: add test to ensure consistency across Python versions
Our package hash is supposed to be consistent from python version to python version.
Test this by adding some known unparse inputs and ensuring that they always have the
same canonical hash.  This test relies on the fact that we run Spack's unit tests
across many python versions.  We can't compute for several python versions within the
same test run so we precompute the hashes and check them in CI.
2022-01-12 06:14:18 -08:00
Todd Gamblin
800229a448 package_hash: fix handling of multimethods and add tests
Package hashing was not properly handling multimethods. In particular, it was removing
any functions that had decorators from the output, so we'd miss things like
`@run_after("install")`, etc.

There were also problems with handling multiple `@when`'s in a single file, and with
handling `@when` functions that *had* to be evaluated dynamically.

- [x] Rework static `@when` resolution for package hash
- [x] Ensure that functions with decorators are not removed from output
- [x] Add tests for many different @when scenarios (multiple @when's,
      combining with other decorators, default/no default, etc.)

Co-authored-by: Danny McClanahan <1305167+cosmicexplorer@users.noreply.github.com>
2022-01-12 06:14:18 -08:00
Todd Gamblin
93a6c51d88 package_hash: rework RemoveDirectives and add a test
Previously we used `directives.__all__` to get directive names, but it wasn't
quite right -- it included `DirectiveMeta`, etc.  It's not wrong, but it's also
not the clearest way to do this.

- [x] Refactor `@directive` to track names in `directive_names` global
- [x] Rename `_directive_names` to `_directive_dict_names` in `DirectiveMeta`
- [x] Add a test for `RemoveDirectives`

Co-authored-by: Danny McClanahan <1305167+cosmicexplorer@users.noreply.github.com>
2022-01-12 06:14:18 -08:00
Todd Gamblin
8880a00862 package_hash: remove all unassigned strings, not just docstrings
Some packages use top-level unassigned strings instead of comments, either just after a
docstring on in the body somewhere else. Ignore those strings becasue they have no
effect on package behavior.

- [x] adjust RemoveDocstrings to remove all free-standing strings.
- [x] move tests for util/package_hash.py to test/util/package_hash.py

Co-authored-by: Danny McClanahan <1305167+cosmicexplorer@users.noreply.github.com>
2022-01-12 06:14:18 -08:00
Todd Gamblin
572fbf4f49 unparser: handle unicode string literals consistently across Python versions
Python 2 and 3 represent string literals differently in the AST. Python 2 requires '\x'
literals, and Python 3 source is always unicode, and allows unicode to be written
directly.  These also unparse differently by default.

- [x] modify unparser to write both out the way `repr` would in Python 2 when
  `py_ver_consistent` is provided.
2022-01-12 06:14:18 -08:00
Todd Gamblin
396c37d82f unparser: implement operator precedence algorithm for unparser
Backport operator precedence algorithm from here:
    397b96f6d7

This eliminates unnecessary parentheses from our unparsed output and makes Spack's unparser
consistent with the one in upstream Python 3.9+, with one exception.

Our parser normalizes argument order when `py_ver_consistent` is set, so that star arguments
in function calls come last.  We have to do this because Python 2's AST doesn't have information
about their actual order.

If we ever support only Python 3.9 and higher, we can easily switch over to `ast.unparse`, as
the unparsing is consistent except for this detail (modulo future changes to `ast.unparse`)
2022-01-12 06:14:18 -08:00
Todd Gamblin
afb358313a unparser: refactor delimiting with context managers in ast.unparse
Backport of 4b3b1226e8
2022-01-12 06:14:18 -08:00
Todd Gamblin
5847eb1e65 unparser: add block() context manager for indentation
This is a backport of a refactor from cpython 3.9
2022-01-12 06:14:18 -08:00
Todd Gamblin
2badd6500e unparse: Make unparsing consistent for 2.7 and 3.5-3.10
Previously, there were differences in the unparsed code for Python 2.7 and for 3.5-3.10.
This makes unparsed code the same across these Python versions by:

    1. Ensuring there are no spaces between unary operators and
       their operands.
    2. Ensuring that *args and **kwargs are always the last arguments,
       regardless of the python version.
    3. Always unparsing print as a function.
    4. Not putting an extra comma after Python 2 class definitions.

Without these changes, the same source can generate different code for different
Python versions, depending on subtle AST differences.

One place where single source will generate an inconsistent AST is with
multi-argument print statements, e.g.:

```
    print("foo", "bar", "baz")
```

In Python 2, this prints a tuple; in Python 3, it is the print function with
multiple arguments.  Use `from __future__ import print_function` to avoid
this inconsistency.
2022-01-12 06:14:18 -08:00
Todd Gamblin
b324fe5d95 externals: add astunparse
Add `astunparse` as `spack_astunparse`. This library unparses Python ASTs and we're
adding it under our own name so that we can make modifications to it.

Ultimately this will be used to make `package_hash` consistent across Python versions.
2022-01-12 06:14:18 -08:00
Andrew W Elble
a38cdddd37
perl-tk: add missing dependencies (#28240) 2022-01-12 14:53:25 +01:00
Dylan Simon
2cf22ad5f2
e2fsprogs: fix non-root install (#28255) 2022-01-12 14:52:46 +01:00
Harmen Stoppels
c8e01752a1
Use depends_on over load in lmod module files generated by Spack (#28352) 2022-01-12 13:29:22 +00:00
snehring
640a4f7dcd
poamsa: fix build errors for gcc10+ (#28262) 2022-01-12 14:09:55 +01:00
Danny McClanahan
435a241869
yarn: add runtime dependency on node-js@4.0: (#27654) 2022-01-12 13:05:49 +00:00
H. Joe Lee
a5ff3206f9
HDF5 GPU VFD: add new package. (#28272) 2022-01-12 13:59:51 +01:00
Melven Roehrig-Zoellner
5bb5bf3efb
ITensor: add v3.1.10 and 'shared' variant (#28370) 2022-01-12 05:20:10 -07:00
Adam J. Stewart
55a62a1ee5
py-async-timeout: fix checksum issue (#28329) 2022-01-12 10:53:12 +01:00
Nils Leif Fischer
7fa81a66af
libtheora: disable docs by default (#28330) 2022-01-12 10:24:58 +01:00
Nils Leif Fischer
4e0372b9b7
curl: add support for external detection (#28331) 2022-01-12 10:24:10 +01:00
Massimiliano Culpo
5476e5d035
Remove tut since it requires deprecated Python 3.6 (#28360) 2022-01-12 09:34:50 +01:00
kwryankrattiger
363a565ce3
Packaging: Virtual package for libllvm (#27200)
Add an abstraction around libllvm to allow libllvm
providers to be specified for all packages.

This is targeting allowing mesa to build against
llvm-amdgpu or intel-llvm or llvm or any other
custom llvm variant that arises for specific GPU
toolchains
2022-01-11 13:28:13 -08:00
Erik Schnetter
d4a468c160
memkind: add v1.12.0 (#28306) 2022-01-11 11:23:36 -07:00
Erik Schnetter
6690bb7411
openblas: New version 0.3.19 (#28308) 2022-01-11 16:55:23 +01:00
Adam J. Stewart
2ab871dd17
py-aiohttp: switch to PyPI tarball (#28333) 2022-01-11 14:33:02 +01:00
Adam J. Stewart
2ea8abef34
Open3D: add missing LLVM dep (#28334) 2022-01-11 14:32:34 +01:00
Erik Schnetter
67d9abb5f1
ffmpeg: add v4.4.1 (#28300) 2022-01-11 14:21:43 +01:00
Harmen Stoppels
f611eb0283
hdf5: prefer stable over experimental releases (#28340) 2022-01-11 10:32:28 +01:00
Harmen Stoppels
78debc1143
mbedtls: add v2.16.12, v2.28.0 and v3.1.0(#28281) 2022-01-11 10:28:58 +01:00
Adam J. Stewart
7b76e3982f
Deprecate Python 2 installations (#28003)
* Deprecate Python 2 installations

* Deprecate py-python-meep

* Deprecate older easybuild backend libs

* Deprecate Python 3.6

* Deprecate miniconda2
2022-01-10 15:45:35 -06:00
Erik Schnetter
675210bd8b
automake: New version 1.16.5 (#28299) 2022-01-10 21:33:14 +01:00
Erik Schnetter
0236e88af4
gawk: New version 5.1.1 (#28301) 2022-01-10 21:32:53 +01:00