iarspider
fc190f397a
Add new version of expat ( #14948 )
2020-02-15 23:11:33 -06:00
iarspider
8624bf65f9
Add new version of fontconfig ( #14949 )
2020-02-15 23:11:10 -06:00
iarspider
e833ef9cce
Add extra version of freetype ( #14950 )
2020-02-15 23:10:42 -06:00
iarspider
1b95c33c82
Add extra version of gperf ( #14951 )
2020-02-15 23:10:21 -06:00
iarspider
978d960158
Add extra version of HepMC ( #14952 )
2020-02-15 23:09:58 -06:00
iarspider
df1e9317b8
Add extra version of highfive ( #14953 )
...
* Add extra version of HepMC
* Add extra version of highfive
* Undo changes to hepmc
2020-02-15 23:09:36 -06:00
iarspider
7f9cd886f3
Add extra version of imagemagick ( #14954 )
2020-02-15 23:09:06 -06:00
iarspider
7d96e496b2
Add extra version of jemalloc ( #14955 )
2020-02-15 23:08:37 -06:00
iarspider
e75b8c1230
Add extra version of json-c ( #14956 )
2020-02-15 23:08:13 -06:00
iarspider
41a2a5db2c
Add extra version of libgit2 ( #14957 )
2020-02-15 23:07:38 -06:00
iarspider
8f877fdc65
Add extra version of libsodium ( #14958 )
2020-02-15 23:07:12 -06:00
iarspider
bab407a28a
Add extra version of libsvm ( #14959 )
2020-02-15 23:06:48 -06:00
iarspider
8308d2d59d
Add extra version of libxkbcommon ( #14961 )
2020-02-15 23:06:17 -06:00
iarspider
a6dc3fe40b
Add extra version of nlohmann-json ( #14962 )
2020-02-15 23:05:54 -06:00
iarspider
12ec8e340f
Add extra version of pcre ( #14963 )
2020-02-15 23:05:30 -06:00
iarspider
f547f2ce10
Add extra version of pixman ( #14964 )
2020-02-15 23:05:09 -06:00
iarspider
00de09268e
Add extra version of py-absl-py ( #14965 )
2020-02-15 23:04:40 -06:00
iarspider
ee573540a0
Add extra version of py-asn1crypto ( #14967 )
2020-02-15 23:03:17 -06:00
iarspider
d7de6cf055
Add extra version of py-arrow ( #14966 )
2020-02-15 23:02:21 -06:00
iarspider
ad7c11c482
Add extra version of py-astroid ( #14968 )
2020-02-15 23:01:53 -06:00
iarspider
ff71844bf6
Add extra version of py-attrs ( #14969 )
2020-02-15 23:01:24 -06:00
Nichols A. Romero
98c4d15655
Flang - Support libomptarget offload to NVidia GPU ( #15015 )
...
* Modify Flang NVidia GPU variant to make use of built-in CudaPackage
* Add OpenMP Offload patch if March 2019 compiler is selected.
* Flang parallel build has a race condition.
* llvm-flang now uses built-in CudaPackage.
* Add variant for different build releases.
* Fix OpenMP target offload for NVidia GPUs.
* Additional commong flags that are needed with comments.
* NVidia BC required for libomp target requires special treatment. Use clang built in previous step to re-compile libomptarget.
2020-02-15 22:56:58 -06:00
iarspider
4f3287a9dc
Add extra version of py-cython ( #14974 )
2020-02-15 22:52:36 -06:00
iarspider
45ee708596
Add extra version of py-coverage ( #14976 )
2020-02-15 22:48:10 -06:00
iarspider
959d9d2365
Add extra version of py-certifi ( #14977 )
2020-02-15 22:47:28 -06:00
iarspider
7c88bb937d
Add extra version of py-backports-abc ( #14978 )
2020-02-15 22:47:05 -06:00
iarspider
c92201e6ab
Add extra version of py-decorator ( #14980 )
2020-02-15 22:44:28 -06:00
iarspider
bcccf0d4e7
Add extra version of py-importlib-metadata ( #14983 )
2020-02-15 22:35:47 -06:00
iarspider
8313de5be0
Add extra version of py-ipaddress ( #14984 )
2020-02-15 22:35:23 -06:00
iarspider
4db0eb4917
Add extra version of py-ipykernel ( #14985 )
2020-02-15 22:33:04 -06:00
iarspider
8b5cc1e76f
Add extra version of py-ipython ( #14986 )
2020-02-15 22:32:28 -06:00
iarspider
bff3a087ec
Add extra version of py-jinja2 ( #14989 )
2020-02-15 22:27:53 -06:00
iarspider
bd24d53ceb
Add extra version of py-jpype1; add numpy as optional (variant) dependency ( #14991 )
...
* Add extra version of py-jpype1
* Add numpy as optional (variant) dependency
2020-02-15 22:24:44 -06:00
iarspider
2c0bfd071f
Add extra version of py-jupyter-client ( #14996 )
2020-02-15 22:21:48 -06:00
Glenn Johnson
e5e6791d97
package r-readbitmap Change jpeg dependency ( #15004 )
...
This PR corrects the jpeg dependency in r-readbitmap to use the jpeg
virtual dependency.
2020-02-15 21:50:54 -06:00
Justin S
4a7e4655ac
mafft: add 7.453 ( #15006 )
2020-02-15 21:48:26 -06:00
Matthias Diener
3f5d889d2b
cloc: add version 1.84 ( #15012 )
2020-02-15 21:34:11 -06:00
Keita Iwabuchi
b688bb549b
Add a new package: Metall ( #14903 )
...
* Add a new package: Metall
* Fix errors in metall/package.py
* Update var/spack/repos/builtin/packages/metall/package.py
Change to https style URL
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update in metall/package.py. Change Metall to depend on Boost always
* Update in metall/package.py. Change to install Boost with the default variants
* Update metall/package.py. Removed a comment
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-15 00:34:32 -06:00
Scott Wittenburg
3c28e72d2f
cuda: add libxml2 as a dependency for newer versions ( #14758 )
2020-02-14 12:13:30 -06:00
Matthias Wolf
978a3bb7ef
py-whichcraft: new package ( #14907 )
...
* py-whichcraft: new package
* address comment
2020-02-14 08:00:58 -06:00
Sajid Ali
c607288a7c
fix env vars before install ( #14575 )
2020-02-13 20:16:34 -06:00
Brian Van Essen
d524abad20
Updated both cub and nccl versions. Fixed a bug in the cub download ( #14852 )
...
url.
2020-02-13 20:10:02 -06:00
Glenn Johnson
8beb42e749
New package: r-codex ( #14869 )
...
This PR adds the r-codex package.
- new package: r-bsgenome-hsapiens-ucsc-hg19
2020-02-13 20:00:39 -06:00
Kai Torben Ohlhus
4fa29ceb50
openblas: add variant +consistentFPCSR ( #14876 )
...
Add the OpenBLAS variant `+consistentFPCSR`, by default `False`, which adds the compile definition `CONSISTENT_FPCSR=1` as documented in OpenBLAS `Makefile.rule`.
2020-02-13 19:59:34 -06:00
Dr. Christian Tacke
690ed2fe98
[rsync] Use popt and zlib ( #14755 )
...
popt and zlib are available as spack packages.
So use them instead of building internal ones.
2020-02-13 19:55:41 -06:00
Glenn Johnson
7996bc809a
New package: r-exomedepth ( #14884 )
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This PR adds the r-exomedepth package and r-aod as a dependency.
2020-02-13 19:52:43 -06:00
Glenn Johnson
580c8f5b7e
New package: r-exomecopy ( #14885 )
2020-02-13 19:51:18 -06:00
Glenn Johnson
46ae3f0570
New package: r-fdb-infiniummethylation-hg18 ( #14890 )
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This PR adds the r-fdb-infiniummethylation-hg18 package and the needed
dependency of r-txdb-hsapiens-ucsc-hg18-knowngene.
2020-02-13 19:49:24 -06:00
Glenn Johnson
725336ee48
Update and fix the r-rhtslib package ( #14863 )
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This PR adds an updated version to the r-rhtslib package as well as fix
the build.
- add patches to use compiler flags from R
- add variables for bzip2 and xz dependencies
- use the spack Makeconf file when building the in-tree htslib
- make patchelf available to allow R to remove reference to temporary
installation directory in htslib shared object
- Add new version of r-rsamtools as the r-rsamtools and r-rhtlib
packages are closely paired.
2020-02-13 19:47:37 -06:00
Seth R. Johnson
0d0ab60150
Patch silo for %clang@9 ( #14892 )
2020-02-13 19:45:55 -06:00
