Commit graph

4853 commits

Author SHA1 Message Date
Tamara Dahlgren
fb8c954e2e
Switch to settings option used in latest *and* oldest listed version (#25340) 2021-08-11 07:30:22 +00:00
Axel Huebl
41ae83463e
doc: def llnl.util.filesystem.find fix rst (#25350)
The star was not rendered in the docs.
2021-08-11 09:14:04 +02:00
Massimiliano Culpo
371bc37dd4
Rework rules for provider weights (#25331)
Preferred providers had a non-zero weight because in an earlier formulation of the logic program that was needed to prefer external providers over default providers. With the current formulation for externals this is not needed anymore, so we can give a weight of zero to both default choices and providers that are externals. _Using zero ensures that we don't introduce any drift towards having less providers, which was happening when minimizing positive weights_.

Modifications:

- [x] Default weight for providers starts at 0 (instead of 10, needed before to prefer externals)
- [x] Rules to compute the `provider_weight` have been refactored. There are multiple possible weights for a given `Virtual`. Only one gets selected by the solver (the one that minimizes the objective function).
- [x] `provider_weight` are now accounting for each different `Virtual`. Before there was a single weight per provider, even if the package was providing multiple virtuals.

* Give preferred providers a weight of zero

Preferred providers had a non-zero weight because in an earlier
formulation of the logic program that was needed to prefer
external providers over default providers.

With the current formulation for externals this is not needed anymore,
so we can give a weight of zero to default choices. Using zero
ensures that we don't introduce any drift towards having
less providers, which was happening when minimizing positive weights.

* Simplify how we compute weights for providers

Rewrite rules so that specific events (i.e. being
an external) unlock the possibility to use certain
weights. The weight being considered is then selected
by the minimization process to be the one that gives
the best score.

* Allow providers to have different weights for different virtuals

Before this change we didn't differentiate providers based on
the virtual they provide, which meant that packages providing
more than one virtual had nonetheless a single weight.

With this change there will be a weight per virtual.
2021-08-10 14:15:45 -07:00
Harmen Stoppels
81be31aee0
Make spack env activate x idempotent (#25222)
* Make spack env activate x idempotent

* Update lib/spack/spack/cmd/env.py
2021-08-09 07:07:39 -07:00
Todd Gamblin
7ddd6ad461 installation: filter padding from all tty output
This is both a bugfix and a generalization of #25168. In #25168, we attempted to filter padding
*just* from the debug output of `spack.util.executable.Executable` objects. It turns out we got it
wrong -- filtering the command line string instead of the arg list resulted in output like this:

```
==> [2021-08-05-21:34:19.918576] ["'", '/', 'b', 'i', 'n', '/', 't', 'a', 'r', "'", ' ', "'", '-', 'o', 'x', 'f', "'", ' ', "'", '/', 't', 'm', 'p', '/', 'r', 'o', 'o', 't', '/', 's', 'p', 'a', 'c', 'k', '-', 's', 't', 'a', 'g', 'e', '/', 's', 'p', 'a', 'c', 'k', '-', 's', 't', 'a', 'g', 'e', '-', 'p', 'a', 't', 'c', 'h', 'e', 'l', 'f', '-', '0', '.', '1', '3', '-', 'w', 'p', 'h', 'p', 't', 'l', 'h', 'w', 'u', 's', 'e', 'i', 'a', '4', 'k', 'p', 'g', 'y', 'd', 'q', 'l', 'l', 'i', '2', '4', 'q', 'b', '5', '5', 'q', 'u', '4', '/', 'p', 'a', 't', 'c', 'h', 'e', 'l', 'f', '-', '0', '.', '1', '3', '.', 't', 'a', 'r', '.', 'b', 'z', '2', "'"]
```

Additionally, plenty of builds output padded paths in other plcaes -- e.g., not just command
arguments, but in other `tty` messages via `llnl.util.filesystem` and other places. `Executable`
isn't really the right place for this.

This PR reverts the changes to `Executable` and moves the filtering into `llnl.util.tty`. There is
now a context manager there that you can use to install a filter for all output.
`spack.installer.build_process()` now uses this context manager to make `tty` do path filtering
when padding is enabled.

- [x] revert filtering in `Executable`
- [x] add ability for `tty` to filter output
- [x] install output filter in `build_process()`
- [x] tests
2021-08-09 01:42:07 -07:00
Todd Gamblin
0a6e98cdb5
refactor: rename colorful kwarg to color (#25292)
`compare_specs()` had a `colorful` keyword argument, but everything else in
spack uses `color` for this.

- [x] rename the argument
- [x] make the default follow spack's `--color=always/never/auto` setting
2021-08-06 06:29:49 +00:00
Adam J. Stewart
e2fe415ae6
Spack version: 0.16.1 -> 0.16.2 (#25255)
17473a08ff merged `v0.16.1` back into `develop` but somehow lost the version bump.  Fix it here.
2021-08-04 14:37:40 -07:00
Harmen Stoppels
468823d1b9
Fix typo (#25223) 2021-08-03 18:00:29 +00:00
Massimiliano Culpo
0026d60b60
Test bootstrapping in a workflow (#25138)
Add a workflow to test bootstrapping clingo on 
different platforms so that we can detect changes 
that break it.

Compute `site_packages_dir` in `bootstrap.py` as it was
before #24095, until we figure a better way to override
that attribute.
2021-08-03 16:53:40 +02:00
AMD Toolchain Support
5698850dc4
aocc 3.1.0: fix version detection for v3.1.0 (#25084) 2021-08-03 13:48:19 +02:00
Todd Gamblin
fc840c904b
executable: filter long paths from debug output (#25168)
Long, padded install paths can get to be very long in the verbose install
output. This has to be filtered out by the Executable class, as it
generates these debug messages.

- [x] add ability to filter paths from Executable output.
- [x] add a context manager that can enable path filtering
- [x] make `build_process` in `installer.py`

This should hopefully allow us to see most of the build output in
Gitlab pipeline builds again.
2021-08-03 10:00:33 +00:00
Todd Gamblin
cf8d1b0387
refactor: convert build_process to use BuildProcessInstaller (#25167)
`build_process` has been around a long time but it's become a very large,
unwieldy method. It's hard to work with because it has a lot of local
variables that need to persist across all of the code.

- [x] To address this, convert it its own `BuildInfoProcess` class.
- [x] Start breaking the method apart by factoring out the main
      installation logic into its own function.
2021-08-03 10:24:24 +02:00
Todd Gamblin
0a0338ddfa bugfix: ensure all bootstrap context managers are exception-safe
When context managers are used to save and restore values, we need to remember
to use try/finally around the yield in case an exception is thrown.  Otherwise,
the cleanup will be skipped.
2021-08-03 10:07:11 +02:00
Todd Gamblin
693c4d8f3a spack style: improve tests for failure cases
This fixes the bad bootstrap test for spack style, and it refines the
asserrtions on other failure cases.
2021-08-03 10:07:11 +02:00
Dylan Simon
507d3c841c
don't spin writer daemon when < /dev/null (#25170) 2021-08-02 21:39:38 -07:00
Adam J. Stewart
6d810cb2e7
Docs: add link to source code (#25088) 2021-08-02 12:36:40 -07:00
Harmen Stoppels
ac8521e9b3
Do not issue a warning for a missing source id when installing from local sources (#24960) 2021-08-02 14:17:41 +02:00
loulawrence
be3e6a0e9b
document config option "url_fetch_method" (#24638)
- Change config from the undocumented `use_curl: true/false` to `url_fetch_method: urllib/curl`.
- Documentation of `url_fetch_method` in `defaults/config.yaml`
- Default fetch option explicitly set to `urllib` for users who may not have curl on their system

To upgrade from `use_curl` to `url_fetch_method`, run `spack config update config`
2021-08-02 10:30:25 +02:00
Todd Gamblin
ab5954520f
spack diff: make output order deterministic (#25169)
The output order for `spack diff` is nondeterministic for larger diffs -- if you
ran it several times it will not put the fields in the spec in the same order on
successive invocations.

This makes a few fixes to `spack diff`:

- [x] Implement the change discussed in https://github.com/spack/spack/pull/22283#discussion_r598337448
      to make `AspFunction` comparable in and of itself and to eliminate the need for `to_tuple()`

- [x] Sort the lists of diff properties so that the output is always in the same order.

- [x] Make the output for different fields the same as what we use in the solver. Previously, we
      would use `Type(value)` for non-string values and `value` for strings.  Now we just use
      the value.  So the output looks a little cleaner:

      ```
      == Old ==========================        == New ====================
      @@ node_target @@                        @@ node_target @@
      -  gdbm Target(x86_64)                   -  gdbm x86_64
      +  zlib Target(skylake)                  +  zlib skylake
      @@ variant_value @@                      @@ variant_value @@
      -  ncurses symlinks bool(False)          -  ncurses symlinks False
      +  zlib optimize bool(True)              +  zlib optimize True
      @@ version @@                            @@ version @@
      -  gdbm Version(1.18.1)                  -  gdbm 1.18.1
      +  zlib Version(1.2.11)                  +  zlib 1.2.11
      @@ node_os @@                            @@ node_os @@
      -  gdbm catalina                         -  gdbm catalina
      +  zlib catalina                         +  zlib catalina
      ```

I suppose if we want to use `repr()` in the output we could do that and could be
consistent but we don't do that elsewhere -- the types of things in Specs are
all stringifiable so the string and the name of the attribute (`version`, `node_os`,
etc.) are sufficient to know what they are.
2021-08-01 05:15:33 +00:00
Scott Wittenburg
f591e9788d
pipelines: Store details about specs broken on develop (#24637)
When a spec fails to build on `develop`, instead of storing an empty file as the entry in the broken specs list, this change stores the full spec yaml as well as links to the failing  pipeline and job.
2021-07-30 09:11:00 -06:00
Vanessasaurus
54e8e19a60
adding spack diff command (#22283)
A `spack diff` will take two specs, and then use the spack.solver.asp.SpackSolverSetup to generate
lists of facts about each (e.g., nodes, variants, etc.) and then take a set difference between the
two to show the user the differences.

Example output:

    $ spack diff python@2.7.8 python@3.8.11
     ==> Warning: This interface is subject to change.

     --- python@2.7.8/tsxdi6gl4lihp25qrm4d6nys3nypufbf
     +++ python@3.8.11/yjtseru4nbpllbaxb46q7wfkyxbuvzxx
     @@ variant_value @@
     -  python patches a8c52415a8b03c0e5f28b5d52ae498f7a7e602007db2b9554df28cd5685839b8
     +  python patches 0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87
     @@ version @@
     -  openssl Version(1.0.2u)
     +  openssl Version(1.1.1k)
     -  python Version(2.7.8)
     +  python Version(3.8.11)

Currently this uses diff-like output but we will attempt to improve on this in the future.

One use case for `spack diff` is whenever a user has a disambiguate situation and cannot 
remember how two different installs are different. The command can also output `--json` in
the case of a more analysis type use case where we want to save complete data with all
diffs and the intersection. However, the command is really more intended for a command
line use case, and we likely will have an analyzer more suited to saving data

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-07-30 00:08:38 -07:00
Zack Galbreath
e8f284bf52
ci: automatically prune the broken-specs list (#24809)
When a develop pipeline successfully finishes a `spack install`, check if
the spec that was just built is on the broken-specs list. If so, remove it.
2021-07-29 13:47:10 -06:00
Zack Galbreath
d7771f190f
Catch ConnectionError from CDash reporter (#24818)
* Catch ConnectionError from CDash reporter

Catch ConnectionError when attempting to upload the results of `spack install`
to CDash. This follows in the spirit of #24299. We do not want `spack install`
to exit with a non-zero status when something goes wrong while attempting to
report results to CDash.

* Catch HTTP Error 400 (Bad Request) in relate_cdash_builds()
2021-07-29 13:46:17 -06:00
Todd Gamblin
6104c31556 bugfix: be careful about GITHUB_BASE_REF in spack style
`spack style` previously used a Travis CI variable to figure out
what the base branch of a PR was, and this was apparently also set
on `develop`.  We switched to `GITHUB_BASE_REF` to support GitHub
Actions, but it looks like this is set to `""` in pushes to develop,
so `spack style` breaks there.

This PR does two things:

- [x] Remove `GITHUB_BASE_REF` knowledge from `spack style` entirely

- [x] Handle `GITHUB_BASE_REF` in style scripts instead, and explicitly
      pass the base ref if it is present, but don't otherwise.

This makes `spack style` *not* dependent on the environment and fixes
handling of the base branch in the right place.
2021-07-27 17:57:17 -07:00
Todd Gamblin
c8efec0295
spack style: add --root option (#25085)
This adds a `--root` option so that `spack style` can check style for
a spack instance other than its own.

We also change the inner workings of `spack style` so that `--config FILE`
(and similar options for the various tools) options are used. This ensures
that when `spack style` runs, it always uses the config from the running spack,
and does *not* pick up configuration from the external root.

- [x] add `--root` option to `spack style`
- [x] add `--config` (or similar) option when invoking style tools
- [x] add a test that verifies we can check an external instance
2021-07-27 15:09:17 -06:00
Adam J. Stewart
520a465190 Documentation does not build with Sphinx 4.1.2 2021-07-26 13:46:27 -07:00
Adam J. Stewart
ab39f548dc Confirm that the docstring is the issue 2021-07-26 13:46:27 -07:00
Adam J. Stewart
26c3df20f1 Docs: attempt to fix doc tests for sphinx 4.1.2 2021-07-26 13:46:27 -07:00
Dylan Simon
1c350854f8
intel-oneapi: fix parallel installer errors (#24911)
Intel oneAPI installs maintain a lock file in XDG_RUNTIME_DIR,
which by default exists in /tmp (and is shared by all component
installs). This prevented multiple oneAPI components from being
installed in parallel. This commit sets XDG_RUNTIME_DIR to exist
within Spack's installation Stage, so allows multiple components
to be installed at the same time.
2021-07-26 10:39:35 -07:00
vsoch
4208cf66be spack style: automatically bootstrap dependencies
This uses our bootstrapping logic to automatically install dependencies for
`spack style`. Users should no longer have to pre-install all of the tools
(`isort`, `mypy`, `black`, `flake8`). The command will do it for them.

- [x] add logic to bootstrap specs with specific version requirements in `spack style`
- [x] remove style tools from CI requirements (to ensure we test bootstrapping)
- [x] rework dependencies for `mypy` and `py-typed-ast`
      - `py-typed-ast` needs to be a link dependency
      - it needs to be at 1.4.1 or higher to work with python 3.9

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-07-24 07:07:35 -07:00
Massimiliano Culpo
a30e6c6158
Bump codecov/action to v2.0.2 (#24983)
* build(deps): bump codecov/codecov-action from 1 to 2.0.1

Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 1 to 2.0.1.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](https://github.com/codecov/codecov-action/compare/v1...v2.0.1)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

* Update arguments to codecov action

* Try to delete the symbolic link to root folder

Hopefully this should get rid of the ELOOP error

* Delete also for shell tests and MacOS

* Bump to v2.0.2

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-07-24 07:23:56 -04:00
Massimiliano Culpo
a68abc15c5 Fix bootstrap from sources
#24095 introduced a couple of bugs, which are fixed here:

1. The module path is computed incorrectly for bootstrapped clingo
2. We remove too many paths for `sys.path` in case of failures
2021-07-21 07:22:07 -07:00
Harmen Stoppels
fc50e04b59
Fix S3 urlparse scheme error and add test (#24952) 2021-07-19 13:39:17 +02:00
Adam J. Stewart
c56f2a935d Sphinx 3.4+ required for correct reference target linking 2021-07-16 08:30:56 -07:00
Adam J. Stewart
b8afc0fd29 API Docs: fix broken reference targets 2021-07-16 08:30:56 -07:00
Adam J. Stewart
c37df94932
Python: query distutils to find site-packages directory (#24095)
Third-party Python libraries may be installed in one of several directories:

1. `lib/pythonX.Y/site-packages` for Spack-installed Python
2. `lib64/pythonX.Y/site-packages` for system Python on RHEL/CentOS/Fedora
3. `lib/pythonX/dist-packages` for system Python on Debian/Ubuntu

Previously, Spack packages were hard-coded to use the (1). Now, we query the Python installation itself and ask it which to use. Ever since #21446 this is how we've been determining where to install Python libraries anyway.

Note: there are still many packages that are hard-coded to use (1). I can change them in this PR, but I don't have the bandwidth to test all of them.

* Python: handle dist-packages and site-packages
* Query Python to find site-packages directory
* Add try-except statements for when distutils isn't installed
* Catch more errors
* Fix root directory used in import tests
* Rely on site_packages_dir property
2021-07-16 08:28:00 -07:00
Massimiliano Culpo
fd55d627a7
archspec: added support for arm compiler on graviton2 (#24904) 2021-07-15 13:27:13 +00:00
Greg Becker
3004f33c58
spec may be a string, use precomputed namespace (#24867) 2021-07-14 11:58:31 -07:00
eugeneswalker
09540d411e
binary_distribution: relocate x-pie-executable files (#24854) 2021-07-13 07:53:35 -07:00
Adam J. Stewart
60765d38d0 Fix KeyboardInterrupt signal for Python 2 2021-07-13 01:17:51 -07:00
Massimiliano Culpo
3228c35df6
Enable/disable bootstrapping and customize store location (#23677)
* Permit to enable/disable bootstrapping and customize store location

This PR adds configuration handles to allow enabling
and disabling bootstrapping, and to customize the store
location.

* Move bootstrap related configuration into its own YAML file

* Add a bootstrap command to manage configuration
2021-07-12 19:00:37 -04:00
Todd Gamblin
f58b2e03ca
build output: filter padding out of console output when padded_length is used (#24514)
Spack allows users to set `padded_length` to pad out the installation path in
build farms so that any binaries created are more easily relocatable. The issue
with this is that the padding dominates installation output and makes it
difficult to see what is going on. The padding also causes logs to easily
exceed size limits for things like GitLab artifacts.

This PR fixes this by adding a filter in the logger daemon. If you use a
setting like this:

config:
    install_tree:
        padded_length: 512

Then lines like this in the output:

==> [2021-06-23-15:59:05.020387] './configure' '--prefix=/Users/gamblin2/padding-log-test/opt/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_pla/darwin-bigsur-skylake/apple-clang-12.0.5/zlib-1.2.11-74mwnxgn6nujehpyyalhwizwojwn5zga

will be replaced with the much more readable:

==> [2021-06-23-15:59:05.020387] './configure' '--prefix=/Users/gamblin2/padding-log-test/opt/[padded-to-512-chars]/darwin-bigsur-skylake/apple-clang-12.0.5/zlib-1.2.11-74mwnxgn6nujehpyyalhwizwojwn5zga

You can see that the padding has been replaced with `[padded-to-512-chars]` to
indicate the total number of characters in the padded prefix. Over a long log
file, this should save a lot of space and allow us to see error messages in
GitHub/GitLab log output.

The *actual* build logs still have full paths in them. Also lines that are
output by Spack and not by a package build are not filtered and will still
display the fully padded path. There aren't that many of these, so the change
should still help reduce file size and readability quite a bit.
2021-07-12 21:48:52 +00:00
Matthew Fernandez
112c1751d7
docs: fix reference to count of system packages (#24821)
015e29efe1 that introduced this section to the
documentation said “two” here instead of the actual count, three.
9f54cea5c5 then added a fourth, BLAS/LAPACK.
Rather than trying to keep this leading count in sync, this change just replaces
the wording with something more generic/stable.
2021-07-11 18:49:19 +00:00
Scott Wittenburg
e0017a6666
Fix out of date remote spec.yamls while updating the index (#24811) 2021-07-10 06:49:09 +00:00
Vanessasaurus
775c8223c3
debug: initial global debug flag support (#24285)
The developer can export environment variables that
are seen by the compiler wrapper to then add the flags
2021-07-09 21:22:26 -04:00
Greg Becker
ebf2076755
spec.splice: properly handle cached hash invalidations (#24795)
* spec.splice: properly handle cached hash invalidations

* make package_hash a cached hash on the spec
2021-07-10 01:16:48 +00:00
Zack Galbreath
0e177cb95f
ci: tolerate 'InvalidAccessKeyId' (#24741)
Add 'InvalidAccessKeyId' to the list of error messages we expect
and tolerate in push_mirror_contents()
2021-07-09 09:39:16 -07:00
Chris White
4037a94d1e
Remove unnecessary compiler id override for XL (#24799) 2021-07-09 09:20:54 -07:00
Todd Gamblin
24c01d57cf
imports: sort imports everywhere in Spack (#24695)
* fix remaining flake8 errors

* imports: sort imports everywhere in Spack

We enabled import order checking in #23947, but fixing things manually drives
people crazy. This used `spack style --fix --all` from #24071 to automatically
sort everything in Spack so PR submitters won't have to deal with it.

This should go in after #24071, as it assumes we're using `isort`, not
`flake8-import-order` to order things. `isort` seems to be more flexible and
allows `llnl` mports to be in their own group before `spack` ones, so this
seems like a good switch.
2021-07-08 22:12:30 +00:00
Todd Gamblin
a22686279c cvs tests: don't use dateutil at all
`dateutil.parser` was an optional dependency for CVS tests. It was failing on macOS
beacuse the dateutil types were not being installed, and mypy was failing *even when the
CVS tests were skipped*. This seems like it was an oversight on macOS --
`types-dateutil-parser` was not installed there, though it was on Linux unit tests.

It takes 6 lines of YAML and some weird test-skipping logic to get `python-dateutil` and
`types-python-dateutil` installed in all the tests where we need them, but it only takes
4 lines of code to write the date parser we need for CVS, so I just did that instead.

Note that CVS date format can vary from system to system, but it seems like it's always
pretty similar for the parts we care about.

- [x] Replace dateutil.parser with a simpler date regex
- [x] Lose the dependency on `dateutil.parser`
2021-07-07 17:27:31 -07:00