Commit graph

8299 commits

Author SHA1 Message Date
Todd Gamblin
04af95c69a Add Slack info to READMEmd (#4542)
- Added a badge to show who's online.
- Added a section under "Get involved!"
2017-06-19 01:00:40 -07:00
Todd Gamblin
d1f176541d Update README.md and add analytics. (#4537) 2017-06-17 19:37:33 +02:00
Andrey Prokopenko
cbdee5faf7 votca-csg: fixing develop url (#4536)
Fix #4525.
2017-06-17 09:32:14 -05:00
becker33
541496dfe1 System config (#4518)
* Code changes to enable system config scope in /etc

Files will go in either /etc/spack or /etc/spack/<platform>
Required minor changes to conftest.

* Updated documentation to match new config scope
2017-06-16 12:31:56 -07:00
Stas Sergienko
5c01fadc59 Added py-pybtex package (#4507)
* Added py-pybtex package

* added more dependencies to py-pybtex

* added run to py-latexcodec dependency
2017-06-16 12:45:30 -05:00
John Roberts
4bd05d0c52 Py ase (#4517)
* py-ase: Adding python package py-ase.

* py-ase: Adding Python package py-ase.

* py-ase: Shortened package description.

* py-ase: Splitting package description to multiple lines to avoid char count max.

* py-ase: Removing trailing whitespace. Local flake8 tests passed now that flake8 is working for me.
2017-06-16 12:44:12 -05:00
Stas Sergienko
09ff2afb78 added py-sphinxcontrib-bibtex and py-pybtex-docutils packages (#4520)
* added py-sphinxcontrib-bibtex and py-pybtex-docutils packages

* added dpendency py-ordereddict
2017-06-16 12:42:36 -05:00
Kyle Fernandes, né Jacobs
a8919b07ca Update intel* packages (#4528)
* Update intel-*  packages

* Update intel package
2017-06-16 12:18:25 -05:00
David Böhme
04c2a1caf4 Update Scalasca/Score-P/Cube/OTF2 (#4485)
* Update Scalasca/Score-P/OTF2/Cube. Should fix #4349#

* cube: Fix flake8 warnings

* cube, scalasca: Fix version range syntax for deps

* otf2: Fix version URL generation

* cube: Remove static URLs
2017-06-16 11:45:06 -05:00
Adam J. Stewart
60db73a3f5 Fix OpenMPI CUDA support (#4323)
* Fix OpenMPI CUDA support

* Remove --with-cuda-libdir flag, not a real flag

* Fix PGI and CUDA 7 support
2017-06-16 10:00:19 -05:00
Milton Woods
f6e3ad4d90 py-pillow: ensure that RPATH includes graphics libraries (#4522) 2017-06-16 08:43:18 -05:00
iulian787
fe7bf77afe oce changes for cgm (#4514)
* oce changes for cgm

cgm can be configured with oce, but oce needs
to have X11 enabled, because some libraries
(like TKCAF in occ/oce) gets built only of X11 is NOT disabled
so introduce a variant +X11 for oce, which is needed when
configuring cgm with oce(+X11)

* follow up review

simplify by removing the patch and different url paths
use append instead of extend, when necessary
make mpi true by default

X11 dependency is still to be addressed; it pulls in some opengl
library (on laptop nvidia seem to work, on virtual linux machine
mesa was good enough)
2017-06-16 08:29:59 -05:00
Todd Gamblin
790b06e0c3 bugfix: support EDITOR values with spaces (#4523)
- previous code called `which` on $EDITOR, but that doesn't work for
  EDITORs like `emacs -nw` or `emacsclient -t -nw`.

- This patch just trusts EDITOR if it is set (same as previous
  behavior), and only uses the defaults if it's not.
2017-06-16 14:03:21 +02:00
Massimiliano Culpo
8b5e94976d issue 4492: DependencyMap.concrete checks for unconditional dependencies (#4499)
* issue 4492: added xfailing test, added owner to DependencyMap

* DependencyMap.concrete checks if we have unconditional dependencies

This fixes #4492 and #4107 using some heuristics to avoid an infinite
recursion among Spec.satisfies, Spec.concrete and DependencyMap.concrete

The idea, as suggested by @becker33, is to check just for unconditional
dependencies. This is not covering the whole space and a package with
just conditional dependencies can still fail in the same way. It should
cover though all the **real** packages we have in our repo so far.
2017-06-16 12:41:15 +02:00
Mario Melara
da67ee9790 Fix tests on cray (#4298)
* Check for CRAYPE_VERSION instead of path

Architecture tests would fail on Cray since it would not find
the expected path. To make the test correctly work on Cray search
for the CRAYPE version instead.

* Catch SystemExit error in case flake8 not in path

On shared systems having flake8 can involve starting own virtual env.
Skip the test if no flake8 is found to avoid failure reporting.

* Add compatibility to 1.5 svnadmin create

The flag added is needed to correctly create svn repos on NERSC systems.
This could be unnecessary for other sites. I'd like to see others
test before this change gets merged.
2017-06-15 15:16:14 -07:00
Stas Sergienko
c102be2144 Added package py-oset (#4500)
* Added py-oset package

* Added package py-oset

* changed homepage url
2017-06-15 13:50:48 -05:00
Stas Sergienko
503efb8881 added py-latexcodec package (#4509)
* Added py-latexcodec package

* removed url line from the file
2017-06-15 09:46:44 -05:00
Stas Sergienko
080314c68e added py-counter package (#4510) 2017-06-15 09:45:27 -05:00
Diana Bite
a9a7805626 openblas: Fix build on aarch64. (#4487)
- invoke make with the correct TARGET for aarch64
- foforce PILERDRIVER as openblas cannot correctly detect CPU on aarch64
- update url to more recent version
2017-06-15 06:38:24 -05:00
Adam J. Stewart
41e4a034ff Add latest version of JDK (#4317)
* Add latest version of JDK

* Use a more specific URL to get curl to work

* Remove failing unit test
2017-06-15 12:40:55 +02:00
Adam J. Stewart
dc911661ca Add missing doc variant to fenics package (#4473) 2017-06-15 12:35:56 +02:00
Mark C. Miller
27e6e8715e Adding initial AMReX package (#4467)
* adding initial amrex package

* adding missing fortran variant predicate

* adjusting description text

* adjusting as per @tgamlin guidance
2017-06-15 12:27:52 +02:00
Stas Sergienko
336e3e6a89 Added py-pywavelets package (#4496)
* Added py-pywt  package

* passes flake8 test

* renamed py-pywt to py-pywavelets
2017-06-15 11:51:52 +02:00
Todd Gamblin
8c2447272e Fix dashes in variant parsing (#4498)
- Skip spack flake8 test when flake8 is not installed.
- Fix parsing of dashes in specs broken by new help parser.
    - use argparse.REMAINDER instead of narg='?'
    - don't interpret parts of specs like -mpi as arguments.
2017-06-15 11:32:55 +02:00
Jon Rood
6762714302 Nalu requires Trilinos with Exodus support (#4505)
* Disabling Exodus in Trilinos by default.

* Returning default of Exodus to true in Trilinos.
2017-06-15 11:31:03 +02:00
Adam J. Stewart
e627447417 Prefer vim to vi for default editor (#4230)
* vim > vi
* Allow which to accept multiple args
* Update __init__ to use which with multiple args
* Fix doc tests
2017-06-15 11:27:18 +02:00
Adam J. Stewart
ce11e78530 Add h5utils package (#4506) 2017-06-14 15:41:42 -05:00
Alicia Klinvex
f732598f51 Fix tpetra-related xsdk errors (#4501)
* Fix tpetra-related xsdk errors

Recent changes to the trilinos package broke the xsdk build.
xSDK explicitly disables tpetra, but packages depending on it
(such as ifpack2 and amesos2) are explicitly enabled by default
in the trilinos package.  This commit explicitly disables them
within the xsdk package.py.

* Disabled exodus in the xsdk build

See issue #4502 for details
2017-06-14 13:56:24 -05:00
Luigi Calori
daa5cf7e73 fix intltool_sbang issue #4191 (#4192)
* fix intltool_sbang issue #4191

* add per dep even if already depending on perl-xml-parser

* adding more comment, properly spaced
2017-06-14 13:24:01 -05:00
Michael Kuhn
1ec3c14d23 Improve qt (#4309)
- Introduce an opengl variant that is enabled by default. Disabling it
  allows building qt for X forwarding etc.
- Depend on fontconfig and freetype to make use of system fonts.
  Otherwise qt can not find any fonts.
- libx11 is required when libxcb is used.
- Set MAKEFLAGS to parallelize qmake compilation.
2017-06-14 13:13:39 -05:00
Nicolas Richart
f06c23ef42 Adding package namd (#4321)
* Initial version of the namd package

* Modified charm to consider compile against intel/intel-mpi

* Correction of namd to compile with intel-mkl and intel compiler

* Adding inclue64 in the prefix

* adding property for the build directory

* removing useless function build
2017-06-14 13:11:30 -05:00
Josh Asplund
bc2c4a14c2 Updates rose definition (#4411)
* Adds z3 package

* Adds binwalk package

* Updates spot package definition

* Updates rose package definition

* Modifications for code review

* Fixes string formatting

* Remove python version requirement
2017-06-14 12:43:50 -05:00
Adam J. Stewart
f4f2f25838 Added new package for py-rsa (#4494) 2017-06-14 10:35:10 -05:00
serbanmaerean
0e5fb26dc1 superlu-dist: don't use '_' symbols from BLAS for IBM XL compiler (#4486) 2017-06-14 00:10:51 -07:00
Geoffrey Oxberry
3025f9d303 ipopt 3.12.7 (#4490)
* ipopt: update version to 3.12.7
* ipopt: add +coinhsl option
* ipopt: add +metis option
2017-06-13 18:09:12 -07:00
Geoffrey Oxberry
6af44e63ad coinhsl 2014.01.17: new package (#4482) 2017-06-13 18:03:49 -07:00
Geoffrey Oxberry
56f7c85c93 metis: bugfix: make shared library build portable (#4489)
Fixes #4488. When compiling metis as a shared library, the package
used the syntax `-rpath=`, followed by a path. This syntax is
non-portable, so replace it using Spack's compiler rpath argument
property.
2017-06-13 17:59:25 -07:00
John Roberts
b802524517 visit: Added VisIt version 2.12.2 (#4495) 2017-06-13 18:17:51 -05:00
scheibelp
1e69d9d1a9 Override partial installs by default - part three (#4331)
* During install, remove prior unfinished installs

If a user performs an installation which fails, in some cases the
install prefix is still present, and the stage path may also be
present. With this commit, unless the user specifies
'--keep-prefix', installs are guaranteed to begin with a clean
slate. The database is used to decide whether an install finished,
since a database record is not added until the end of the install
process.

* test updates

* repair_partial uses keep_prefix and keep_stage

* use of mock stage object to ensure that stage is destroyed when it should be destroyed (and otherwise not)

* add --restage option to 'install' command; when this option is not set, the default is to reuse a stage if it is found.
2017-06-13 09:15:51 -07:00
Massimiliano Culpo
9defe2c1c2 espresso: fixed compilation for 6.1 (elpa) and added support for hdf5 (#4483)
* espresso: fixed compilation for 6.1 (elpa) and added support for hdf5

* espresso: addressed items in @davydden review

* espresso: fixed behavior for espresso@:5.4.0
2017-06-13 10:22:12 -05:00
serbanmaerean
df6d8d913b Fix/mumps (#4453)
* Added magma package

* Incorporated Serban's change

* mumps: Fix compiler error with IBM XL

Split the patching between v 5.0.2 and 5.1.1
2017-06-13 08:09:59 -05:00
Michael Kuhn
181fd95057 Fix building shared libraries for gmp (#4464)
If specific compiler flags are set, gmp will not build a shared library,
causing failures further down the line.
2017-06-13 08:06:44 -05:00
Diana Bite
d450e4a93b czmq: Fix invocation when building with clang. (#4479)
Also bump to latest stable version.
2017-06-13 07:43:54 -05:00
Adam J. Stewart
14aa3b63e3 Add list_url for packages from http://ab-initio.mit.edu/ (#4471) 2017-06-12 09:48:20 -05:00
Adam J. Stewart
0de653ff01 Add an installcheck phase to MakefilePackage (#4476)
* Add an installcheck phase to MakefilePackage

* Minor changes to ESMF
2017-06-12 09:47:46 -05:00
Axel Huebl
ab9155eb37 ISAAC Server: Less Strict Deps (#4481)
The dependencies of the server packages were overly strict and pulled in too many dependencies.
This fixes it.
2017-06-12 16:01:17 +02:00
Robert Pavel
f127c4ed27 New Package: bml (#4213)
* New Package: lanl-bml

Added LANL's BML library as Spack Package as dependency for future
packages

* Adjusted lanl-bml versions

Specified current master as develop and added v1.1.0 tagged version

* Renamed lanlbml package to bml
2017-06-11 17:21:51 -05:00
Adam J. Stewart
4db107353e Convert elk to MakefilePackage (#4477) 2017-06-11 18:47:40 +02:00
Milton Woods
a5c6f0412b gcc: use isl@0.14 for gcc@5 (#4474) 2017-06-10 08:16:10 -05:00
Todd Gamblin
c67f647785 Move description to top of spack info (#4475) 2017-06-09 21:02:16 -07:00