Gilles Gouaillardet
051abfb894
py-scipy: do not build 1.6 and older with python < 3.10.1 ( #35120 )
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py-scipy 1.6 and older come with pre cython-ized files that
use the _PyGen_Send symbol that was removed from python 3.10.0.161,
so do not build these old versions with python 3.10.1 and later
2023-01-24 18:32:21 -08:00
eugeneswalker
0447ba1213
loki%gcc@11: -std=c++14 to avoid issue #32122 ( #35148 )
2023-01-24 17:42:33 -08:00
Rémi Lacroix
ff3dbe9394
LAMMPS: Add package ml-hdnnp. ( #35133 )
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First added as user-hdnnp in version 20210527.
2023-01-24 17:15:23 -08:00
Thomas Bouvier
90d00f8a59
Add package py-nvidia-dali ( #35058 )
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* Add package `py-nvidia-dali`
* Add linux check
* Add missing deps
2023-01-24 18:26:04 -06:00
Taillefumier Mathieu
fdc6bd3f1c
Fix dbcsr checksums ( #35134 )
2023-01-24 22:33:12 +01:00
Cory Bloor
d17aaf8729
hip: add cuda variant ( #33872 )
2023-01-24 22:30:58 +01:00
Jen Herting
ef6699b874
New package: srcml ( #35097 )
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* Initial srcml
* [srcml]
- Fixed dependencies likely will need some more rework
- Disabling packaging cmake file (for now)
- Added patch to fix issue with source code library import
* [srcml] updated copyright
* [srcml] requires antlr complied with -fPIC
* [srcml] cleaned up dependencies
* [srcml] flake8
* [srcml] limiting boost versions
Co-authored-by: Benjamin Meyers <bsmits@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-01-24 13:13:56 -08:00
Adam J. Stewart
f5418ac344
py-planetary-computer: add new package ( #35089 )
2023-01-24 10:25:29 -08:00
Mikael Simberg
909a5b1d83
Add whip 0.1.0 and use in pika ( #35073 )
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* Add whip 0.1.0
* Make pika depend on whip@0.1.0
Co-authored-by: msimberg <msimberg@users.noreply.github.com>
2023-01-24 10:20:10 -08:00
Emil Briggs
9a0884bfed
rmgdft: Update for version 5.0.1 ( #35047 )
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* Updated for RMG version 5.0.1
* Update var/spack/repos/builtin/packages/rmgdft/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-01-24 10:18:05 -08:00
Seth R. Johnson
a9d5db572c
ForTrilinos: new version 2.2.0 ( #35138 )
2023-01-24 09:52:45 -08:00
Harmen Stoppels
16dbbb9b26
libgcrypt: make sure flags go through env ( #35135 )
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Parts of libgcrypt should not be optimized with -O1/2/3, so it's best to
let the build system do that; the build system cannot know the compiler
wrapper would inject optimization flags
2023-01-24 09:47:33 -08:00
John W. Parent
3695200a3c
hdf5: remove direct dependency on msmpi on Windows ( #35111 )
2023-01-24 07:57:40 -08:00
Matthieu Dorier
a1b2ba412b
mochi-margo: add v0.12 ( #35132 )
2023-01-24 16:46:27 +01:00
John W. Parent
c81f1235a9
Windows: conflict with Apple-GL ( #35114 )
2023-01-24 16:41:30 +01:00
Taillefumier Mathieu
eaa16338de
Update dbcsr version ( #35131 )
2023-01-24 15:38:49 +01:00
Massimiliano Culpo
115b6b2a51
Avoid creating help.sh and test.sh in cwd ( #35123 )
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When running unit-test the test/ci.py module is leaving
garbage (help.sh, test.sh files) in the current working
directory.
This commit changes the current working directory to a
temporary path before those files are created.
2023-01-24 03:42:15 -08:00
kwryankrattiger
cd2d6a6397
ParaView/VTK: Patch xdmf2 for HDF5 1.13 ( #33930 )
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* ParaView/VTK: Patch xdmf2 for HDF5 1.13
* Meson: update meson build system for 0.64
* ParaView: Change HDF5 1.13 patch to 1.13.1/2 patchs
* Mesa: Remove legacy mesa option from meson_args
* Use append to assemble meson args
2023-01-23 19:22:21 -08:00
Erik Schnetter
c5086a5d0e
curl: New version 7.87.0 ( #35088 )
2023-01-23 19:02:31 -08:00
downloadico
b5fc217dc2
actually add samtools 1.16.1 and fix Copyright dates on samtools, bcftools, and htslib ( #35118 )
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* samtools: add version 1.16.1 (for real this time!)
also, fix Copyright date
* bcftools and htslib: fix Copyright date
2023-01-23 17:37:40 -08:00
Richarda Butler
a4b8753456
Update: spack help --spec ( #35115 )
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* Update variant & compiler propagation
* Add the info for non boolean variants
* Add example for multi variants
2023-01-24 00:42:08 +00:00
Jean-Luc Fattebert
f3e7669400
Update qmd-progress package.py ( #34841 )
2023-01-23 14:20:19 -08:00
HELICS-bot
042d305ed0
helics: Add version 3.4.0 ( #35096 )
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Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
2023-01-23 13:56:19 -08:00
Rémi Lacroix
aca4be1fff
n2p2: Allow building shared libraries ( #35080 )
2023-01-23 13:46:19 -08:00
Alex Richert
beba33b2d8
Update parallelio from NOAA-EMC fork ( #34837 )
2023-01-23 22:29:06 +01:00
Wouter Deconinck
0f2e0a01a9
freeimage: fails to compile with c++17, use c++14 ( #35067 )
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* freeimage: fails to compile with c++17, use c++14
Only `opencascade` when a (non-default) variant depends on `freeimage`, which seems to have gone unmaintained. There are c++17 standard violations [[1]]( https://en.cppreference.com/w/cpp/language/except_spec ) in the code, so we can at most expect c++14. Since some compilers default to c++17 (gcc-12) we need to be explicit.
* freeimage: install directly in prefix
* freeimage: fix inverted patch
2023-01-23 12:14:19 -08:00
downloadico
c2d68975bc
update Samtools, bcftools, and htslib versions ( #35043 )
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* samtools: add version 1.6.1
* htslib: update version to 1.6
* bcftools: update version to 1.6
2023-01-23 12:13:05 -08:00
Christopher Christofi
b9e196e40c
perl-test-leaktrace: add 0.17 ( #35063 )
2023-01-23 10:58:08 -08:00
Jen Herting
a7fbe60660
[antlr] added pic variant ( #35091 )
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* [antlr] modernize config arg processing
* [antlr] added pic variant
* [antlr] flake8
2023-01-23 10:52:23 -08:00
Mark W. Krentel
64b373e156
hpcviewer: add version 2023.01 ( #35036 )
2023-01-23 10:26:54 -08:00
Harmen Stoppels
13739e0783
environments: don't replace relative view path with absolute path on concretize/install ( #34958 )
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* environments: don't rewrite relative view path, expand path on cli ahead of time
Currently if you have a spack.yaml that specifies a view by relative
path, Spack expands it to an absolute path on `spack -e . install` and
persists that to disk.
This is rather annoying when you have a `spack.yaml` file inside a git
repo, cause you want to use relative paths to make it relocatable, but
you constantly have to undo the changes made to spack.yaml by Spack.
So, as an alternative:
1. Always stick to paths as they are provided in spack.yaml, never
replace them with a canonicalized version
2. Turn relative paths on the command line into absolute paths before
storing to spack.yaml. This way you can do `spack env create --dir
./env --with-view ./view` and both `./env` and `./view` are resolved
to the current working dir, as expected (not `./env/view`). This
corresponds to the old behavior of `spack env create`.
* create --with-view always takes a value
2023-01-23 10:03:54 -08:00
Massimiliano Culpo
b8684008d0
apptainer: add v1.1.5 ( #35075 )
2023-01-23 09:53:10 -08:00
eugeneswalker
a82fe2010f
e4s: add cusz +cuda ( #35004 )
2023-01-23 09:15:39 -08:00
Thomas Bouvier
3bd0d9a3d2
py-pytest-mock: add v3.10.0 (#35074 )
2023-01-23 09:33:11 -06:00
Thomas Bouvier
fbc24d7bab
py-datasets: add v2.8.0 (#35069 )
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* `py-datasets`: add v2.8.0
* Add missing +http variant + fix wrong dependency versions
2023-01-22 17:08:40 -06:00
eugeneswalker
4b91a40bdf
axom: need to specify +rocm as part of dependency constraints ( #35066 )
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* axom: need to specify +cuda, +rocm as part of dependency constraints
* remove lines 120, 128
* fix line length, spack style issue
2023-01-22 11:23:39 -08:00
Thomas Bouvier
b7a68938c2
arrow: don't use when as a keyword argument to filter_file() (#35065 )
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Co-authored-by: thomas-bouvier <thomas-bouvier@users.noreply.github.com>
2023-01-22 09:05:37 +01:00
Alex Richert
ce8727cece
Add --exclude option to 'spack external find' ( #35013 )
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* Add --exclude option to 'spack external find' to ignore user-specified external packages
* Update bash completion arg order for external find
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-01-21 15:43:20 -08:00
Thomas Bouvier
da1165ffa3
py-wandb: add v0.13.9 (#35059 )
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* `py-wandb`: add v0.13.9
* `py-wandb`: mark v0.10.1 as deprecated
* Fixes suggested by @adamjstewart
* No platform-specific requirements
2023-01-21 17:21:41 -06:00
Dylan Simon
f593309b4e
py-numba: fix py-numpy version dependencies ( #35054 )
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as per #34362 comments
2023-01-21 07:17:53 -08:00
Harmen Stoppels
a15448eae8
gmake: bootstrap without make ( #35050 )
2023-01-21 02:27:56 -08:00
Matthew Thompson
cc01e33d53
fms: add 32bit variant, add protections ( #35010 )
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The GEOS Earth System Model currently requires the 32-bit variant of FMS. This PR adds that variant.
2023-01-21 10:27:13 +01:00
markus-ferrell
c3e3c392a6
Windows/testing: enable tests for "spack find" ( #33588 )
2023-01-20 17:54:06 -08:00
John W. Parent
a424f7f173
Identify Windows support with tags ( #35027 )
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All packages with explicit Windows support can be found with
`spack list --tags=windows`.
This also removes the documentation which explicitly lists
supported packages on Windows (which is currently out of date and
is now unnecessary with the added tags).
Note that if a package does not appear in this list, it *may*
still build on Windows, but it likely means that no explicit
attempt has been made to support it.
2023-01-20 13:32:28 -08:00
QuellynSnead
d192dab5a1
netlib-lapack: Fix Fortran detection for XL ( #35048 )
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* PR 30738 introduced changes in how we access compiler info. Looks like the XL case
got missed.
2023-01-20 13:13:39 -08:00
Harmen Stoppels
aa91358cc2
libbsd: bump ( #35029 )
2023-01-20 11:48:57 -08:00
Thomas Bouvier
bdc0b73b7a
Add package py-imagehash ( #35015 )
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* Add package `py-imagehash`
* Use virtual package for `py-pillow`
2023-01-20 10:28:04 -08:00
eugeneswalker
62f83dfb6d
flex%oneapi@2023.0.0: -Wno-error=implicit-function-declaration ( #34900 )
2023-01-20 10:18:13 -08:00
Zack Galbreath
91fd6d5a84
Allocate more memory for generate jobs in all stacks ( #35040 )
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* Allocate more memory for generate jobs in all stacks
* Add a 60 minute timeout on generate jobs
2023-01-20 11:06:49 -07:00
Harmen Stoppels
a14b5de43c
ca-certificates-mozilla: 2023-01-10 ( #35018 )
2023-01-20 09:52:47 -08:00
