eugeneswalker
cea1b3123e
e4s oneapi ci: use official intel oneapi-derived runner image ( #38176 )
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* e4s oneapi ci: use official intel oneapi-derived runner image
* update oneapi image
* tau builds ok, but only with libdrm - comment out for now, follow up with pr later
2023-06-08 09:17:22 -07:00
Alec Scott
b22ccf279d
junit4: add v4.13.2 ( #38122 )
2023-06-08 11:54:09 -04:00
Wouter Deconinck
81e15ce36e
(r-rcpp)armadillo: new version 12.4.0 ( #38246 )
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* armadillo: new version 12.4.0
No build system changes necessary, https://gitlab.com/conradsnicta/armadillo-code/-/compare/12.2.x...12.4.x
* r-rcpparmadillo: new version 0.12.4.0.0
2023-06-08 11:49:17 -04:00
George Young
8907e52933
bismark: add 0.24.1, add HISAT2 dependency ( #38210 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-08 11:49:00 -04:00
Carlos Bederián
80cefedac5
quantum-espresso: add 7.2 ( #38223 )
2023-06-08 11:23:54 -04:00
Seth R. Johnson
b85a66f77a
trilinos: drop preferred version ( #38086 )
2023-06-08 11:18:44 -04:00
Alec Scott
a0ba3d890a
cni-plugins: add v1.3.0 ( #38064 )
2023-06-08 10:27:20 +02:00
Manuela Kuhn
315873cbd3
py-keyring: add 23.13.1 ( #38183 )
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* py-keyring: add 23.13.1
* [@spackbot] updating style on behalf of manuelakuhn
2023-06-07 23:00:05 -05:00
Thomas Bouvier
e05095af90
py-nvidia-dali: update versions up to v1.26.0 (#38022 )
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* `py-nvidia-dali`: update versions up to v1.26.0
* Add proper `cuda` dependency version
2023-06-07 22:52:52 -05:00
Thomas Bouvier
e0d6a73f96
py-horovod: add versions v0.27.0 and v0.28.0 (#38016 )
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* `py-horovod`: add versions v0.27.0 and v0.28.0
* fix: typo
* Add upper version bound for `py-pyarrow`
2023-06-07 22:51:19 -05:00
Manuela Kuhn
6ebfb41ad9
py-json5: add 0.9.14 ( #38178 )
2023-06-07 22:16:28 -05:00
Manuela Kuhn
d0aa01c807
py-jaraco-classes: add 3.2.3 ( #38167 )
2023-06-07 21:48:58 -05:00
Manuela Kuhn
1265c7df47
py-jupyter-client: add 8.2.0 ( #38180 )
2023-06-07 21:48:12 -05:00
Alec Scott
91e3f14959
hbase: add v2.5.3 ( #38073 )
2023-06-07 18:11:21 -07:00
Alec Scott
5f03eb650d
chemfiles: add v0.10.4 ( #38063 )
2023-06-07 18:05:37 -07:00
Martin Pokorny
e0e6133444
casacore: add v3.5.0 ( #37806 )
2023-06-07 23:12:08 +02:00
Nate deVelder
ee68baf254
OpenFAST: add v3.3.0, v3.4.0 and v3.4.1 ( #37407 )
2023-06-07 23:10:39 +02:00
Christopher Kotfila
785c1a2070
Add documentation about package signing model ( #30939 )
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Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-06-07 23:05:44 +02:00
Dan Lipsa
79656655ba
Guard for define in netcdf 4.9.0 and later. ( #37853 )
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* Guard for define in netcdf 4.9.0 and later.
This code is already available in ParaView 5.11.0 so no patching
needed there.
* Add latest needed version (even if not in spack).
---------
Co-authored-by: Dan Lipsa <dan.lipsa@khq.kitware.com>
2023-06-07 14:20:27 -05:00
Sajid Ali
74921788a8
llvm: add new versions and set default for libomptarget according to os ( #38092 )
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* llvm: add new versions and set default for libomptarget according to os
modified: var/spack/repos/builtin/packages/llvm/package.py
* Incorporate reviewer suggestions
Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
---------
Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-06-07 10:55:46 -05:00
Carlos Bederián
b313b28e64
nwchem: remove -mtune=native flags ( #37892 )
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Co-authored-by: Edoardo Aprà <edoardo.apra@gmail.com>
2023-06-07 09:02:35 +02:00
eugeneswalker
5f1bc15e80
E4S Cray CI Stack ( #37837 )
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* e4s cray ci stack
* e4s ci: add cray
* add zen4 tag
* WIP: new defintions just for cray
* updates
* remove ci signing job overrride, not necessary
* echo $PATH and show modules loaded
* add mirror
* add external def for cray-libsci
* comment out quantum-espresso
* use /etc/protected-runner as key path
* cray ci stack: do not remove tags: [spack, public]
* make cray stack composable
* generate job should run on public tagged runner, override default config:install_tree:root
* CI: Use relative path in default script
* CI: Use relative includes paths for shell runners
* Use concrete_env_dir for relpath
* ml-darwin-aarch64-mps: jax has bazel codesign issue
---------
Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-06-06 18:41:32 -07:00
Mikael Simberg
fa9fb60df3
CachedCMakePackage: fix bug where CMAKE_CUDA_ARCHITECTURES=none is set ( #38169 )
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#37592 updated cached cmake packages to set CMAKE_CUDA_ARCHITECTURES.
The condition `if archs != "none"` lead to `CMAKE_CUDA_ARCHITECTURES=none`
when cuda_arch=none (incorrect check on the value of a multi-valued
variant), i.e. CMAKE_CUDA_ARCHITECTURES is always set. This PR udpates
the condition to if archs[0] != "none" to ensure CMAKE_CUDA_ARCHITECTURES
is only set if cuda_arch is not none (which seems to be the pattern used
in other packages).
This does the same for HIP (although in general ROCmPackage disallows
amdgpu_target=none when +rocm).
2023-06-06 14:41:02 -07:00
Mosè Giordano
e759e6c410
julia: Update patch for llvm 14 without binary files ( #37959 )
2023-06-06 21:53:20 +02:00
Jonathon Anderson
f41446258a
containers: don't install epel-release on Fedora ( #37766 )
2023-06-06 21:50:46 +02:00
Erik Schnetter
268649654d
openssl: add versions 1.1.1u, 3.0.9, 3.1.1 ( #38023 )
2023-06-06 21:49:01 +02:00
Diego Alvarez S
12e249f64e
Add nextflow 23.04.1 ( #38166 )
2023-06-06 12:12:50 -07:00
Tamara Dahlgren
c34cd76f2a
perl: convert to new stand-alone test process ( #37727 )
2023-06-06 12:07:44 -07:00
Tamara Dahlgren
815b210fc8
tests/ginkgo: converted to new stand-alone test process ( #35730 )
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* Ginkgo: converted to new stand-alone test process
* ginkgo: update string formatting, compiler setting
2023-06-06 11:58:53 -07:00
Tamara Dahlgren
e5d5efb4c1
tests/darshan-util: convert to new stand-alone test process ( #37836 )
2023-06-06 11:56:40 -07:00
Tamara Dahlgren
0aa4b4d990
tests/oommf: convert to new stand-alone test process ( #38009 )
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* oommf: convert to new stand-alone test process
* oommf: Switch build-time tests to documented approach
2023-06-06 11:55:33 -07:00
Tamara Dahlgren
01c1d334ae
tests/mfem: convert to new stand-alone test process ( #38011 )
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* mfem: convert to new stand-alone test process
* Restore make target, use config_mk property
2023-06-06 11:42:51 -07:00
Massimiliano Culpo
717fc11a46
Don't build rocky:9 images for ppc64le ( #38202 )
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See https://docs.rockylinux.org/release_notes/9_2/
2023-06-06 17:46:53 +02:00
eugeneswalker
d21c49e329
@develop+stokhos: do not set Stokhos_ENABLE_PCE_Scalar_Type=False ( #38187 )
2023-06-06 08:32:21 -07:00
Tamara Dahlgren
6937d9dddc
eigenexa: convert to new stand-alone test process ( #35745 )
2023-06-06 15:08:51 +02:00
Thomas Bouvier
4c2531d5fb
libraqm: add missing fribidi dependency (#36125 )
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* `libraqm`: add missing `fribidi` dependency
* `libraqm`: add `sheenbidi` variant
* [@spackbot] updating style on behalf of thomas-bouvier
---------
Co-authored-by: thomas-bouvier <thomas-bouvier@users.noreply.github.com>
2023-06-05 18:13:42 -04:00
Alex Richert
62fd890c52
Rename fpic variant to pic for fms ( #38101 )
2023-06-05 14:58:52 -07:00
Alex Richert
4772fd7723
Add MADIS package ( #38097 )
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* Add MADIS package
* madis update
* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
* allow arg mismatch for gcc@10: for madis
2023-06-05 14:31:51 -07:00
snehring
7c11faceb0
ninja-phylogeny: adding new package ninja-phylogeny ( #38182 )
2023-06-05 16:44:51 -04:00
Alec Scott
053550e28a
asdcplib: add v2_10_38 ( #37971 )
2023-06-05 12:46:19 -07:00
Alec Scott
3ed7258447
fjcontrib: add v1.052 ( #38116 )
2023-06-05 14:25:30 -05:00
Manuela Kuhn
a5cf5baa9e
py-jupyterlab: add 4.0.1 incl. new dependencies ( #38102 )
2023-06-05 13:54:20 -05:00
Alec Scott
ec8039cc74
seal: add v4.1.1 ( #38155 )
2023-06-05 11:46:40 -07:00
snehring
9bfa840c27
ncbi-rmblastn: adding new version 2.14.0 ( #38173 )
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* ncbi-rmblastn: adding new version 2.14.0
* ncbi-rmblastn: add maintainer
2023-06-05 11:45:15 -07:00
Alec Scott
9865f42335
azcopy: add v10.19.0 ( #38106 )
2023-06-05 10:56:34 -07:00
Alec Scott
dba2829871
hssp: add v3.1.5 ( #38107 )
2023-06-05 10:51:30 -07:00
Alec Scott
8c0e1fbed9
diamond: add v2.1.7 ( #38115 )
2023-06-05 10:46:39 -07:00
Alec Scott
187488b75b
optional-lite: add v3.5.0 ( #38148 )
2023-06-05 10:24:37 -07:00
Alec Scott
2aa35fef3e
nccmp: add v1.9.1.0 ( #38142 )
2023-06-05 10:15:25 -07:00
Nathalie Furmento
d373fc36ae
starpu: add release 1.3.11 ( #38172 )
2023-06-05 09:12:40 -07:00
