Commit graph

19693 commits

Author SHA1 Message Date
Mark W. Krentel
040204c261
intel-xed: add patch to 12.0.1 to fix segfault (#21436)
Fix segfault due to uninitialized data when trying to decode some cases of data that aren't a valid instruction.
2021-02-02 12:40:24 -08:00
Greg Becker
7dcf3f7aed
add intel oneapi to compiler/pkg translations (#21448) 2021-02-02 19:11:51 +00:00
bryanherman
d048048911
py-nbsphinx: new package (#21444)
* added py-nbsphinx package

* added a comment about nbsphinx use
2021-02-02 11:24:28 -06:00
Andrew-Dunning-NNL
959df6bb12
py-grandalf: new recipe (#21348)
* py-grandalf: new recipe

* py-grandalf: add runtime dependency

* py-grandalf: add runtime dependency)
2021-02-02 11:22:36 -06:00
Andrew-Dunning-NNL
59a54905ea
py-dictdiffer: fix offline dependencies (#21345)
* py-dictdiffer: fix offline dependencies

* Update var/spack/repos/builtin/packages/py-dictdiffer/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-02 11:21:58 -06:00
Andrew-Dunning-NNL
8b6c468cdf
py-ftfy: new recipe (#21333)
* py-ftfy: new recipe

* py-ftfy: depend on python>3.5
2021-02-02 11:19:02 -06:00
Andrew-Dunning-NNL
71309f75b2
py-dulwich: new recipe (#21330)
* py-dulwich: new recipe

* py-dulwhich: add python dependency

* py-dulwich: fix flake8 whitespace
2021-02-02 11:15:34 -06:00
Andrew-Dunning-NNL
49b3ab684e
py-flatten-dict: new recipe (#21329)
* py-flatten-dict: new recipe

* Update var/spack/repos/builtin/packages/py-flatten-dict/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-flatten-dict: fix dependencies

* py-flatten-dict: fix dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-02 11:14:12 -06:00
apreifsteck
df0cc9ee02
OSU mvapich2 GDR 2.3.5 package.py update (#21270)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: NOWLAB PACKAGER <mvapich-help@cse.ohio-state.edu>
2021-02-01 18:48:16 -08:00
Sergei Shudler
8f2acc3123
mfem: Add e4s testsuite-inspired smoke test (#21228) 2021-02-01 17:49:20 -08:00
Desmond Orton
71b12e9b27
New R Package Pegas@0.14 (#21359) 2021-02-01 16:42:44 -08:00
Desmond Orton
6cc23e6137
New Feature r-quickplot (#21430) 2021-02-01 18:02:14 -06:00
iarspider
eac95c866a
FastJet: add optional patch to make random generator thread-local (#21395) 2021-02-01 11:18:04 -08:00
Adam J. Stewart
b597cbe1c0
PythonPackage: fewer phases (#20738) 2021-02-01 12:48:45 -06:00
Phil Carns
03fce1f0c9
replace margo pkg with updated mochi-margo pkg (#20273) 2021-02-01 12:38:02 -06:00
iarspider
586ff05af1
New package: frontier-client (#21405) 2021-02-01 10:23:56 -08:00
iarspider
5add6c4e03
New package: unigen (#21338) 2021-02-01 10:21:02 -08:00
Ryan Mast
5cb8d1894b
libgcrypt: add versions up to 1.9.1 (#21401) 2021-02-01 10:11:51 -08:00
Jose E. Roman
4523cce791
SLEPc: add v3.14.2 (#21422) 2021-02-01 09:42:13 -08:00
Adam J. Stewart
1d636bed6a
R: add maintainer(s) (#21119)
* R: add maintainer(s)

* Add maintainer to base class
2021-02-01 11:33:33 -06:00
Adam J. Stewart
40a40e0265
Python 3.10 support: collections.abc (#20441) 2021-02-01 11:30:25 -06:00
Andrew-Dunning-NNL
f781403615
py-colored-traceback: new package (#21423) 2021-02-01 11:14:00 -06:00
eugeneswalker
0b58499d7a
llvm: "master" branch is now "main" branch (#21411) 2021-02-01 08:32:36 -06:00
iarspider
af988fc32d
sqlite: add v3.32.03 (#21417) 2021-02-01 15:04:19 +01:00
Tomoki, Karatsu
6feb697b62
abinit: fix build with Fujitsu compilers (#21213) 2021-02-01 15:03:03 +01:00
iarspider
260706c186
coin3d: depend on gl/glu (virtual packages), not on opengl/openglu (#21419) 2021-02-01 15:01:05 +01:00
Tomoyasu Nojiri
c279983c10
cgdb: add a few build dependencies (#20927) 2021-02-01 15:00:52 +01:00
Jean-Paul Pelteret
a04e0d2525
Add package: py-beancount (#21274)
* Add package: py-beancount

* Fixes
2021-01-31 12:29:29 -06:00
darmac
f7929aaeb1
chrony: add missing dependency (#21403) 2021-01-31 12:21:23 -05:00
Jean-Paul Pelteret
6ac3d98f4c
Add package: py-flask-babel (#21272) 2021-01-31 10:50:16 -06:00
Jean-Paul Pelteret
6c03c9996a
Add package: py-markdown2 (#21273) 2021-01-31 10:49:49 -06:00
Adam J. Stewart
c950f4a4ff
py-numpy: add v1.20.0 (#21409) 2021-01-31 06:28:21 +01:00
Toyohisa Kameyama
c175c05af9
quantum-expresso: fix for Fujitsu compiler (#21368) 2021-01-29 17:36:58 -08:00
Harmen Stoppels
371247c14a
Fix https://github.com/spack/spack/pull/21391#issuecomment-769961025 (#21397) 2021-01-29 17:21:56 -08:00
Massimiliano Culpo
13ac7198d3
clingo: added a package with option for bootstrapping clingo (#20652)
* clingo/clingo-bootstrap: added a package with option for bootstrapping clingo

package builds in Release mode
uses GCC options to link libstdc++ and libgcc statically

* clingo-bootstrap: apple-clang options to bootstrap statically on darwin

* clingo: fix the path of the Python interpreter

In case multiple Python versions are in the same prefix
(e.g. when clingo is built against an external Python),
it may happen that the Python used by CMake does not
match the corresponding node in the current spec.

This is fixed here by defining "Python_EXECUTABLE"
properly as a hint to CMake.

* clingo: the commit for "spack" version has been updated.
2021-01-29 12:22:57 -08:00
Robert Underwood
0611036abd
doxygen: add support for external detection (#20642) 2021-01-29 21:05:48 +01:00
Yang Zongze
f8124369f9
Print groups properly for spack find -d (#20028) 2021-01-29 11:05:36 -08:00
Peter Lindstrom
0f82fa5151
zfp: several package improvements (#21244)
- add variants for build targets, language bindings, backends
- ensure selected variants are compatible with zfp version
- point to GitHub (not LLNL) tar balls
- add dependencies
- update link to homepage
- add maintainers

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-29 17:51:30 +01:00
albestro
47c85059fb
it seems like there was a bug in the version of APEX that we set by default in 1.5.x (#21391) 2021-01-29 16:51:28 +01:00
a-saitoh-fj
9761c13878
dssp: added smoke tests (#21366) 2021-01-29 10:29:42 +01:00
Tomoyasu Nojiri
e3a0c48599
py-cheetah: restrict valid python interpreter to 2.7.X, add v2.4.4 (#21363) 2021-01-29 09:43:43 +01:00
Tomoyasu Nojiri
7b6c99655c
py-cheetah3: add new package at v3.2.6 (#21387) 2021-01-29 09:41:32 +01:00
Tomoyasu Nojiri
bc639fe60b
wtdbg2: enable build for aarch64 (#21390)
Use sse2neon to maintain the same API calls for aarch64
2021-01-29 09:37:00 +01:00
Tomoyasu Nojiri
b18479a2bd
swarm: add v3.0.0 (#21389) 2021-01-29 09:18:41 +01:00
Adam J. Stewart
519ba5590c
py-graphviz: add v0.8.4 (#21383) 2021-01-28 18:25:07 -08:00
Cyrus Harrison
57c23b964a
add new package: bloaty (#21355) 2021-01-28 16:44:07 -08:00
Dan Lipsa
5a9da90d07
Use utf8 for latex build. (#21360)
Patch provided by @Billae

Avoid the following error:
  File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 768, in _writer_daemon
    line = _retry(in_pipe.readline)()
  File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 830, in wrapped
    return function(*args, **kwargs)
  File "/usr/lib/python3.8/codecs.py", line 322, in decode
    (result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x97 in position 220: invalid start byte
2021-01-28 15:58:55 -05:00
Massimiliano Culpo
f523ea8c4e
perl: add v5.32.1 (#21375)
Make it such that BigSur is seen as 10.16 rather than 11.1, since the latter causes troubles with Perl configuration
2021-01-28 21:54:28 +01:00
Desmond Orton
b095dfb44b
New Package r-fpCompare@0.2.3 (#21380) 2021-01-28 14:29:57 -06:00
iarspider
f28026c040
pacparser: new package at v1.3.7 (#21372)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-28 20:42:53 +01:00