Commit graph

8918 commits

Author SHA1 Message Date
Mark Olesen
f939697863 add adios2 dependency and configuration for newest OpenFOAM (#12993) 2019-10-01 10:48:14 -05:00
noguchi-k
5b4040ea36 libcerf:add CFLAGS for fujitsu compiler (#12990)
* libcerf:add CFLAGS for fujitsu compiler

* fix for flake8
2019-10-01 08:54:01 -05:00
egreen77
cfc17e9506 Update nano (#12980) 2019-09-30 16:27:29 -05:00
Adam J. Stewart
5b2b0ee9a3
Revert "update neovim (#12965)" (#12978)
This reverts commit 86a85b7eb2.
2019-09-30 13:18:27 -05:00
Satish Balay
c70f9bffe2 petsc, slepc: add new versions - 3.12.0 (#12979) 2019-09-30 13:18:11 -05:00
Seth R. Johnson
7bcb306d4a Fix GCC environment variables for external installations (#12454)
Unlike the compiler binary name search logic, the `setup_environment` in
GCC's package assumes the compiler names are *exactly* `gcc`, `g++`,
etc. In many external installations (Homebrew, Macports) the
installation includes only *suffixed* versions such as `gcc-9`.

This patch uses the GCC compiler search suffixes to actually locate the
correct filenames for the installed compilers, allowing the
Spack-generated module file to have useful definitions of CC, CXX, etc.

It also allows for the possibility that the user's external installation
of GCC is compiled without Fortran support, in which case the `FC`
environment variables are not defined.
2019-09-30 11:02:32 -07:00
t-karatsu
139eaa1306 otf2: add configure args to specify compiler commands. (#12711)
* otf2: add configure args to specify compiler commands.

* Modify the reference of the compile commands.
2019-09-30 08:18:09 -05:00
Glenn Johnson
c56f03a3ba The perl-uri-escape package duplicates perl-uri (#12971)
* The perl-uri-escape package duplicates perl-uri

The Perl URI::Escape module is in the Perl URI package so the Spack
perl-uri-escape package is a duplicate of the perl-uri package. This PR
does the following:

- replace `depends_on('perl-uri-escape')` with `depends_on('perl-uri')`
  in packages that dependend on perl-uri-escape
- add the version from perl-uri-escape to perl-uri
- remove the unneeded dependency from perl-uri
- remove the perl-uri-escape package

* Reinstated perl-test-needs dependency

Put the perl-test-needs dependency for perl-uri back in but set it to
type='test'.

* For tests to succeed the type must be ('build', 'test')
2019-09-29 09:27:42 -05:00
Massimiliano Culpo
467261803f raxml: simplified recipe by removing SIMD variants (#12952)
Now the support for SSE3 or AVX is tested on the selected target
2019-09-28 13:45:01 -05:00
t-karatsu
c065c25a4c bowtie: fix for aarch64, and bugfix about c++11-narrowing. (#12953) 2019-09-28 13:44:02 -05:00
Massimiliano Culpo
4cebc68f06 vdt: simplified recipe by removing SIMD variants (#12954)
Now the support for SSE3 or AVX is tested on the selected target
2019-09-28 13:41:57 -05:00
Jaroslav Hron
7e9365036f correct with-xxx-lib= options (#12964) 2019-09-28 13:39:45 -05:00
Patrick Schratz
86a85b7eb2 update neovim (#12965) 2019-09-28 13:28:27 -05:00
Shintaro Iwasaki
3776eccc4b bolt: add a new version, 1.0rc2 (#12966) 2019-09-28 13:27:33 -05:00
Daryl W. Grunau
8db94bcc86 eospac: laws.lanl.gov -> laws-green.lanl.gov (#12970) 2019-09-27 17:28:38 -07:00
Ross Miller
c49c37af9b py-adios package: restrict python dependency to <=3.6.x (#12932)
The adios code (currently) won't compile against the Python 3.7 C API.
This change adds a dependency on 3.6 or less.
2019-09-27 17:19:36 -07:00
Kevin Huck
b4c28182dc Tau package: turn off unsupported variants by default on OSX (#12890) 2019-09-27 17:16:44 -07:00
G-Ragghianti
61d41eea7f New package: libibumad (#12886) 2019-09-27 17:02:34 -07:00
Glenn Johnson
fc99eddb12 New package: maker and dependencies (#12904) 2019-09-27 14:59:58 -07:00
Seth R. Johnson
5201d2615e qt4: fix 'arch' string due to microarchitecture change (#12957)
qt4 fails to build because it's expecting something like 'x86_64' rather 
than 'broadwell'.
2019-09-26 21:15:17 +02:00
Massimiliano Culpo
90236bc9f5
Update target comparison semantic for a few packages (#12947)
Use spec.target.family instead of spec.architecture.target
2019-09-26 10:25:12 +02:00
Massimiliano Culpo
31e5318c24
Removed references to '(-march|-mtune|-mcpu)=native' (#12948)
Now that Spack injects microarchitecture specific optimizations for
the selected target, packages should avoid adding flags that could
step over those.
2019-09-26 10:02:08 +02:00
Massimiliano Culpo
78d051b534
parsimonator: simplified recipe by removing SIMD variants (#12949)
Now the support for SSE3 or AVX is tested on the selected target
2019-09-26 09:33:18 +02:00
Seth R. Johnson
f2967b6c16 New package: flibcpp (Fortran bindings to C++ standard library) (#12926) 2019-09-25 19:25:24 -07:00
liuyangzhuan
b384504218 butterflypack package: add version 1.0.3 (#12927) 2019-09-25 19:16:47 -07:00
Glenn Johnson
dd626a0f07 interproscan package: add version 4.8, patch for version 5 (#12897)
This PR adds interproscan-4.8, which has a completely different build
system than version 5. Note that this builds for running on a host as
opposed to a queue system. I am fairly certain that a queue system can
be configured later.

This PR also adds a patch for intrproscan-5 to build when the user
building the packages has a large GID by setting posix mode for tar.
2019-09-25 19:04:57 -07:00
Sinan
c5860d89b7 libspatialite package: add version 3.0.1 and missing dependencies (#12843) 2019-09-25 18:48:48 -07:00
Sinan
507b28de18 py-imageio package: add versions 2.4.1 and 2.5.0 (#12884) 2019-09-25 18:44:57 -07:00
Matthieu Dorier
e6cae978b8 llvm, mesa: update target comparison semantics (#12914)
* llvm: fixed issues with syntax and formatting
  * use spec.architecture.target.family
  * use spec.target instead of spec.architecture.target
* mesa: use == instead of __contains__
2019-09-25 16:41:02 -07:00
Adam J. Stewart
4e858e24b0
libflame: fix macOS build (#12950) 2019-09-25 18:37:33 -05:00
Matthieu Dorier
71cc29691b openblas: fixed a query to target family (#12910) 2019-09-25 22:15:23 +02:00
Christoph Junghans
ccfe8aaf76
portage: fix RelWithDebInfo build (#12944) 2019-09-25 11:29:43 -06:00
Christoph Junghans
e123058721
kokkos-kernels: initial commit (#12934) 2019-09-25 09:00:01 -06:00
Mathias Jacquelin
7a11a2ccdb Upcxx package: remove warning, add version 2019.9.0 (#12880)
A function added to this package ran as part of importing it and
printed a warning for most Spack invocations, this removes the
warning message.

Also:

* Use compilers directly instead of Spack compiler wrappers (since
  references to the compiler are embedded in text and binary files
  of the installation)
* Add 'cross' variant for setting CROSS environment variable for
  build
* Set UPCXX_INSTALL for generated module files
* Set UPCXX_GASNET_CONDUIT/UPCXX_NETWORK in generated module files
  on Cray systems
* Also set UPCXX_NETWORK in build environment for Cray systems
2019-09-24 13:25:05 -07:00
Simo Tuomisto
6cd5edacca heaptrack: added new package at version 1.1.0 (#12844) 2019-09-24 15:54:23 +02:00
Glenn Johnson
10d5e90e65 Add missing dependency to perl-xml-parser (#12903)
This PR adds the following dependency:

+    depends_on('perl-libwww-perl', type=('build', 'run'))
2019-09-24 12:51:55 +02:00
Glenn Johnson
fa5a9cd878 Added missing dependencies for perl-list-moreutils (#12900)
The following dependencies were added:

+    depends_on('perl-exporter-tiny', type=('build', 'run'))
+    depends_on('perl-list-moreutils-xs', type=('build', 'run'))
2019-09-24 12:45:39 +02:00
Glenn Johnson
b508eaa806 Added depencies to perl-libwww-perl (#12899)
The following dependencies are needed for perl-libwww-perl according to
https://metacpan.org:

+    depends_on('perl-encode-locale', type=('build', 'run'))
+    depends_on('perl-file-listing', type=('build', 'run'))
+    depends_on('perl-html-parser', type=('build', 'run'))
+    depends_on('perl-http-cookies', type=('build', 'run'))
+    depends_on('perl-http-daemon', type=('build', 'run'))
+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-http-message', type=('build', 'run'))
+    depends_on('perl-http-negotiate', type=('build', 'run'))
+    depends_on('perl-lwp-mediatypes', type=('build', 'run'))
+    depends_on('perl-net-http', type=('build', 'run'))
+    depends_on('perl-try-tiny', type=('build', 'run'))
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-www-robotrules', type=('build', 'run'))
2019-09-24 12:45:02 +02:00
Glenn Johnson
ca11ce06b8 Add missing dependencies to perl-http-daemon (#12898)
Added the following dependencies:

+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-module-build-tiny', type='build')
2019-09-24 12:44:28 +02:00
Axel Huebl
1d316c4eb3 spdlog: added version 1.4.1 (#12917)
Add newest release with ability to pre-build as shared or static
library.
2019-09-24 12:19:19 +02:00
Adam J. Stewart
53db1eafb9
Fix installation permissions on BLIS and libflame libs (#12919)
* Fix installation permissions on BLIS and libflame libs

* Fix undefined symbols
2019-09-23 18:54:47 -05:00
Jed Brown
958b81a564 libceed package: add version 0.5 (#12875)
Also enable vectorization via -O3 for gcc/clang
2019-09-23 10:38:44 -07:00
Seth R. Johnson
27d4e9a1d1 QT package: only enable fontconfig when freetype is enabled (#12574)
The 'fontconfig' option is only valid when freetype is enabled.
2019-09-23 10:04:29 -07:00
Xavier Delaruelle
53ab298e88 environment-modules: add version 4.3.1 (#12893) 2019-09-21 21:32:27 -05:00
Paul
ef652ee42a czmq package: add autoreconf stage (#12846) 2019-09-20 18:14:41 -07:00
Jordan Ogas
d9c22e3f9c charliecloud package: add version 0.11 and test dependency (#12861) 2019-09-20 18:01:40 -07:00
Sinan
326c2718d5 New package: py-gast (#12874) 2019-09-20 17:59:50 -07:00
t-karatsu
e26b23e980 intel-tbb: fix typo. 2019-09-20 17:53:23 -07:00
Sinan
af8f245f48 py-protobuf package: fix import error for Python 2.x (#12873) 2019-09-20 17:52:11 -07:00
Massimiliano Culpo
7daf860991 targets: adjust packages to use new specific targets semantics
Seamless translation from 'target=<generic>' to either
- target.family == <generic> (in methods)
- 'target=<generic>:' (in directives)

Also updated docs to show ranges in directives.
2019-09-20 00:51:37 -07:00