Commit graph

4792 commits

Author SHA1 Message Date
lingnanyuan
f91c25ddee r-samr: Create new package. (#6117) 2017-11-03 14:19:16 -06:00
lingnanyuan
d54627659a r-impute: Create new package. (#6116) 2017-11-03 14:18:46 -06:00
lingnanyuan
95e290eaf3 r-altcdfenvs: Create new package. (#6115) 2017-11-03 14:18:17 -06:00
lingnanyuan
64689bdb01 r-makecdfenv: Create new package. (#6114) 2017-11-03 14:17:58 -06:00
lingnanyuan
b614c7970b r-hypergraph: Create new package. (#6113) 2017-11-03 14:17:36 -06:00
Axel Huebl
5a4544ab05 ISAAC 1.3.2 (#6129)
Add a new release of ISAAC.
2017-11-03 14:58:38 +01:00
Ben Boeckel
be01b2d5f0 aspell: refuse to work with non-global extensions
Aspell compiles in the paths it looks for rather than looking relative
to its binary location. There are also no environment variables to
redirect it other than changing the path to the configuration file it
looks at.
2017-11-02 18:45:40 -07:00
Ben Boeckel
a81485cb3f perl: support extensions in views 2017-11-02 18:45:40 -07:00
Oliver Breitwieser
643a28aac5 python: extensions support for easy-install.pth 2017-11-02 18:45:40 -07:00
Ben Boeckel
d5a3d9d20e view: test conflicting packages in views 2017-11-02 18:45:40 -07:00
Ben Boeckel
13b669de8e view: test that extension paths exist 2017-11-02 18:45:40 -07:00
Ben Boeckel
41dfba0ba1 extension1: add a second version 2017-11-02 18:45:40 -07:00
Ben Boeckel
a7925bb927 bdftopcf: require xproto and fontsproto at build time (#6112)
These are technically "link" depends of libxfont, but they have no
actual libraries.

Fixes #5936.
2017-11-02 15:47:18 -06:00
lingnanyuan
13f1781bea Add package r-reportingtools and update url for its dependencies. (#6071)
* r-reportingtools: Create new package.

* r-go-db: Update url.

* r-gseabase: Update url.

* r-pfam-db: Update url.
2017-11-02 14:21:32 -06:00
Michael Kuhn
d1db161aeb adios: Fix hdf5 and sz dependencies (#6016)
- hdf5's +hl variant is required because the build uses libhdf5_hl.
- sz is only compatible up to version 1.4.10 because the library has
  been renamed to libSZ in 1.4.11.
2017-11-02 13:41:25 -06:00
Brice Goglin
3a1b013291 hwloc: add version 1.11.8 (#6099)
Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2017-11-02 13:40:46 -06:00
Audrey Thoma
f9341857c7 arlecore: new package (#6109) 2017-11-02 13:40:03 -06:00
Christoph Junghans
c4db3d384e gromacs: add develop version (#6098) 2017-11-02 15:16:21 +01:00
Adam J. Stewart
e47ceefc43 sundials+hypre depends on hypre (#6075) 2017-11-02 08:16:43 +01:00
Denis Davydov
11ba60413b the-silver-searcher: add missing dependency (#6095) 2017-11-02 08:10:40 +01:00
Michael Kuhn
61ed583266 xqilla: Use append instead of extend (#6094) 2017-11-02 08:09:24 +01:00
Brian Van Essen
932068d725 Update candle (#6097) 2017-11-01 23:58:55 -06:00
Yifan Zhu
7d0c6361ee r-getoptlong: created new package (#6069) 2017-11-01 19:09:54 -06:00
Yifan Zhu
f15969d624 r-gtrellis: created new package (#6088) 2017-11-01 19:09:20 -06:00
Brian Van Essen
86b7b84ddf LBANN flags and OpenCV variant (#5951)
* Fixed the datatype flag in the LBANN package.
Fixed where the datatype flag should be set.

* Added variant to OpenCV to disable building DNN support

* Fixed a bug in how the elemental package tries to find its Fortran
library.  The current method does not work with Intel compilers.

* Added necessary paths for cuDNN and CUB.

* Addressed flake8 issues in Elemental package.

* Fixed several flake8 errors.  Added variant to build with or without
support for arbitrary-precision floating point arithmetic.

* Added the proper CMake flag when MPFR support is disabled.

* Fixed a bug in how the cudnn path was being set when there was no
cudnn requested.  Also requested that OpenCV is built without eigen
support.

* Fixed another bug where a dependency may not be there and thus should
not be always checked.
2017-11-01 17:25:28 -07:00
Michael Kuhn
0d624eac55 lua: Build a shared library (#6008)
Patch is inspired by Arch Linux and Homebrew.
2017-11-01 17:10:14 -06:00
Yifan Zhu
f3af8272f5 r-circlize: new package (#6087) 2017-11-01 17:08:46 -06:00
lingnanyuan
ef240f59b8 r-alsace: Create new package. (#6064) 2017-11-01 17:04:56 -06:00
Yifan Zhu
26ade0c9ae r-globaloptions: new package (#6068) 2017-11-01 17:04:38 -06:00
lingnanyuan
a05cca49d8 r-affycoretools: Create new package and its dependency r-ff. (#6082)
* r-ff: Create new package

* r-affycoretools: Create new package.

* r-ff: update url.
2017-11-01 17:04:17 -06:00
lingnanyuan
541818ed06 r-agimicrorna: Create new package. (#6083) 2017-11-01 17:03:48 -06:00
Yifan Zhu
616a43b76d r-complexheatmap: created new package (#6084) 2017-11-01 17:03:30 -06:00
Yifan Zhu
ebff5086d7 r-shape: created new package (#6086) 2017-11-01 17:03:15 -06:00
Yifan Zhu
7fb6fbea54 r-pmcmr: new package (#6085) 2017-11-01 17:02:58 -06:00
Brian Van Essen
0c075b4923 Opencv eigen (#6014)
* Added a package for the MDAnalysis toolkit.

* Changed dependency for the eigen library to not include support for
multiple-precision (arbitrary-precision) floating point arithmetic,
since OpenCV does not support these data types.

* Fixed incorrect implementation
2017-11-01 13:50:06 -07:00
Mark Grondona
165e6bfe5f flux: update flux-core to v0.8.0 (#5914)
* dockbook: remove update to dependent environment

Remove override of setup_dependent_environment in both docbook-xml
and docbook-xsl, which seems to generate a warning from spack about
"Suspicious requests to set or unset 'XML_CATLOG_FILES' found."

* flux: update version/dependencies to 0.8.0

Update flux-core to v0.8.0. Clean up dependencies and remove unneeded
extra invocation of ./autogen.sh when building from @master.

* flux: modify environment for Lua tests

Modify Spack environment to add `./?.lua` to LUA_PATH so that
fluxometer.lua can be found by tests during `make check` run
from `spack install --tests all flux`

* flux: fix broken flux version when on master

When building @master with spack, the flux version test from
`make check` fails because spack is using a shallow clone. Add
a setup section for @master that calls git pull --depth=50 --tags
to pull down tags and (hopefully) enough information for git-describe
to work properly.
2017-11-01 08:53:37 -07:00
Satish Balay
445ffc46a1 mfem does not use cmake for builds [anymore] - so remove code corresponding to this dependency. (#6073)
This enables mfem build on OSX [with xcode/clang compilers]
2017-11-01 08:52:03 -07:00
Elsa Gonsiorowski
b53adc90f7 MACSio and JSON-CWX packages (#6018) 2017-10-31 19:07:00 -06:00
Patrick Gartung
8a812294e0 Preinstall some llvm shared libraries so tblgen will work. (#5988) 2017-10-31 18:34:33 -06:00
Yifan Zhu
0ecef7d7f8 r-somaticsignatures: created new package (#6065) 2017-10-31 18:31:06 -06:00
lingnanyuan
1ec8f6ea3f r-nloptr: Create new package. (#6063) 2017-10-31 18:30:49 -06:00
lingnanyuan
cfb685aa32 r-ptw: Create new package. (#6062) 2017-10-31 18:29:45 -06:00
lingnanyuan
aa1808c9a1 r-iso: Create new package. (#6061) 2017-10-31 16:17:53 -06:00
lingnanyuan
6af19477ef r-nnls: Create new package. (#6060) 2017-10-31 16:17:36 -06:00
lingnanyuan
77b29288e6 r-als: Create new package. (#6059) 2017-10-31 16:17:21 -06:00
Yifan Zhu
10fcd9382a r-ggbio: new package (#6058) 2017-10-31 16:17:07 -06:00
Bill Williams
f5e68879db Fix spack build for RAJA: master requires submodules (#6052)
* Fix spack build for RAJA: master requires submodules

* Rename version: git to develop
2017-10-31 15:08:32 -06:00
Scott Wittenburg
3cb2d5341d Fix incorrect checksum value for adios2 tarball (#6054) 2017-10-31 15:08:08 -06:00
lingnanyuan
6427406fc6 r-gviz: Create new package. (#6043) 2017-10-31 15:06:30 -06:00
Brian Homerding
8a86016bef Added fftw dependency (#6057) 2017-10-31 14:33:01 -06:00