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Author SHA1 Message Date
Wouter Deconinck
6b3f9c5d60
New package: vgm (#17741) 
* [vgm] new package Virtual Geometry Model (VGM)

* [vgm] Updated description
 2020-07-29 21:04:37 -05:00
Wouter Deconinck
ba5aa67303
New package: geant4-vmc (#17745) 
* [geant4-vmc] New package

* [geant4-vmc] aligned spacing
 2020-07-29 20:44:16 -05:00
David Böhme
21ca7abf8d
Add Caliper v2.4.0 (#17750) 
* Add Caliper v2.4.0

* Use built-in gotcha
 2020-07-29 20:41:41 -05:00
Julien Loiseau
efb456cb0a
Adding pic support for Kokkos (#17751) 
* Adding pic support for Kokkos

* Update pic for kokkos
 2020-07-29 20:40:12 -05:00
h-denpo
4e12dc3303
elang add depends_on('ncurses', type='link') (#17761) 2020-07-29 20:30:04 -05:00
Mark W. Krentel
896e83e3e6
libunwind: add +pic variant (#17762) 
Libunwind already builds a shared library.  The +pic variant adds the
compiler pic flag to the static archive so that it can be linked into
another shared library.
 2020-07-29 20:29:24 -05:00
ketsubouchi
8435016a43
eagle: fix CC=gcc and delete march=native (#17763) 2020-07-29 20:28:31 -05:00
Justin S
416a929f7f
spades: add 3.14.1 (#17776) 2020-07-29 20:03:58 -05:00
Robert Pavel
af778aac0a
Tweak to EOSPAC for gcc@10 Support (#17777) 
Eospac's build breaks on gcc@10: due to dependence on -fcommon behavior
and gnu changing to -fno-common. Added conditional argument to support
bleeding edge compilers
 2020-07-29 20:03:12 -05:00
tilne
5a5f2c00a8
update URL and sha256 for aws-parallelcluster 2.8.0 (#17685) 
Signed-off-by: Tim Lane <tilne@amazon.com>
 2020-07-29 19:35:43 -05:00
Jen Herting
5243f97c3b
[bowtie2] added version 2.4.1 (#17748) 2020-07-29 15:15:33 -07:00
Rémi Lacroix
5a42883528
Boost: Update conflicts for version 1.73.0. (#17774) 
Variant "+mpi+python cxxstd=98" is fixed in 1.73.0.
 2020-07-29 12:08:20 -07:00
ketsubouchi
1827db2859
express: add cast for %fj (#17764) 2020-07-29 11:53:39 -07:00
Toyohisa Kameyama
5b12c0f4a0
clamcv: Add curl dependency. (#17765) 2020-07-29 11:48:07 -07:00
darmac
a0e6145884
Add new package: solr (#17597) 
* Add new package: solr

* refine version order
 2020-07-29 11:38:44 -07:00
Massimiliano Culpo
e47e972cf2 zlib: style changes to check if set of changed files is computed correctly 2020-07-29 11:23:34 -07:00
Massimiliano Culpo
3e1661a183 Use "fetch-depth: 0" to retrieve all history from remote 2020-07-29 11:23:34 -07:00
Massimiliano Culpo
c4f29c6384 Simplified YAML files for Github Actions workflows 
Updated actions where needed
 2020-07-29 11:23:34 -07:00
Massimiliano Culpo
1f7f076189 Group tests with similar duration together 
Style and documentation tests take just a few minutes
to run. Since in Github actions one can't restart a single
job but needs to restart an entire workflow, here we group
tests with similar duration together.
 2020-07-29 11:23:34 -07:00
Matthias Wolf
90648bb477
qt: fix build with ~ssl. (#17767) 
OpenSSL was pulled from the spec too early, leading to failures when
attempting to build with ~ssl.
 2020-07-29 10:53:01 -07:00
Andrew W Elble
d1494fe8da
perl: add missing berkeley-db dependency (#17771) 2020-07-29 10:46:24 -07:00
Massimiliano Culpo
cad21d6eb1
lmod: change variant defaults to match Lmod's defaults (#17770) 2020-07-29 10:35:46 -07:00
mic84
a212bb0577
Amrvis: update branch name (#17718) 2020-07-28 09:12:00 -07:00
Todd Gamblin
f24dd29cd2 Merge tag 'v0.15.3' into develop 2020-07-28 02:18:30 -07:00
Todd Gamblin
0f25462ea6 update CHANGELOG.md for 0.15.3 2020-07-28 02:11:06 -07:00
Todd Gamblin
ae4bbbd241 bump version number for 0.15.3 2020-07-28 02:05:26 -07:00
Greg Becker
24bd9e3039 bugfix: allow relative view paths (#17721) 
Relative paths in views have been broken since #17608 or earlier.

- [x] Fix by passing base path of the environment into the `ViewDescriptor`.
      Relative paths are calculated from this path.
 2020-07-27 23:48:59 -07:00
Greg Becker
158ee6ac25
bugfix: allow relative view paths (#17721) 
Relative paths in views have been broken since #17608 or earlier.

- [x] Fix by passing base path of the environment into the `ViewDescriptor`.
      Relative paths are calculated from this path.
 2020-07-27 23:44:56 -07:00
Todd Gamblin
cefb4ba014
tutorial: Add boto3 installation to setup script (#17722) 2020-07-27 16:55:33 -07:00
Todd Gamblin
0efb8ef412 tutorial: Add boto3 installation to setup script 2020-07-27 15:55:44 -07:00
Patrick Gartung
7c61d6d45f
Update darshan package with mpi variant (#17717) 
* Update darshan package with nompi variant.

* Change variant to mpi and default to True
 2020-07-27 16:30:29 -05:00
Glenn Johnson
ff529e6dc1
r-adespatial: added new package (#17700) 
This PR adds the r-adesaptial package and several other new packages as
dependencies.

- r-adegraphics
- r-adephylo
- r-phylobase
- r-rncl
- r-rnexml
 2020-07-27 22:08:48 +02:00
Glenn Johnson
1c0abaa6eb
r-dss: added new package at v2.36.0 with dependencies (#17661) 
This PR adds the r-dss package and the r-bsseq package, also new, as a
dependency. This includes the latest versions, which required updates to
the following dependencies:

- r-biocgenerics
- r-iranges
- r-s4vectors
- r-summarizedexperiment

Older versions of r-dss and r-bsseq are included as well to ensure
compatibility with older versions of the above dependencies.
 2020-07-27 20:51:27 +02:00
Patrick Gartung
69775fcc07 Relocation of sbang needs to be done when the spack prefix changes even if the install tree has not changed. (#17455) 2020-07-27 11:38:48 -07:00
Patrick Gartung
ce772420dd Relocate rpaths for all binaries, then do text bin replacement if the rpaths still exist after running patchelf/otool (#17418) 2020-07-27 11:28:50 -07:00
Seth R. Johnson
6c2749536e
qt: fixed build with apple-clang (#17706) 2020-07-27 18:32:29 +02:00
Adam J. Stewart
4e4b8d8249
SciPy: added v1.5.2 (#17708) 2020-07-27 18:26:30 +02:00
ketsubouchi
032a52e006
scons: added support to Fujitsu compilers (#17710) 2020-07-27 18:23:53 +02:00
Hadrien G
e3cc7fc38c
acts: added v0.29 (#17712) 2020-07-27 18:13:56 +02:00
Amjad Kotobi
f2e66730d0
openmpi: added lustre variant to openmpi (#17478) 2020-07-27 18:11:57 +02:00
Claire Guilbaud
0ebdfb3c37
sphinxcontrib-mermaid: new package at v0.4.0 (#17630) 2020-07-27 17:30:22 +02:00
Claire Guilbaud
fdb21e3e91
json logger: new package at v0.1.11 (#17628) 2020-07-27 16:32:56 +02:00
Claire Guilbaud
d66d430ab5
pygments pytest: new package at v1.2.0 (#17626) 2020-07-27 15:44:26 +02:00
Claire Guilbaud
bbfc9fd448
commonmark: new package at v0.9.0 (#17624) 2020-07-27 15:02:56 +02:00
Claire Guilbaud
e960e016af
hieroglyph: new package at v1.0.0 (#17625) 2020-07-27 14:34:40 +02:00
Claire Guilbaud
074c0d622f
python docs theme: new package at v2020.1 (#17627) 2020-07-27 12:53:04 +02:00
Claire Guilbaud
458a9f22da
yolk3k: new package at v0.9 (#17635) 2020-07-27 12:48:58 +02:00
Claire Guilbaud
38730c6e68
sphinxcontrib trio: new package at v1.1.2 (#17631) 2020-07-27 12:14:12 +02:00
Claire Guilbaud
21a4edb1f3
sphinx gallery: new package at v0.7.0 (#17633) 2020-07-27 11:21:48 +02:00
Greg Becker
9cc01dc574 add tutorial setup script to share/spack (#17705) 
* add tutorial setup script to share/spack

* Add check for Ubuntu 18, fix xvda check, fix apt-get errors
  - now works on t2.micro, t2.small, and m instances
  - apt-get needs retries around it to work

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
 2020-07-27 01:18:16 -07:00